DCAR_006519

Resource Type: 
Polypeptide
Name: 
DCAR_006519
Identifier: 
DCAR_006519.mRNA-protein
Sequence: 
MAAATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPIS
TSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYE
KLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWR
YCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALI
QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYA
AANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPW
DKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDP
RKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVF
KNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMI
GHGLGAAGGLEAIATIKAINTGWDLEPSVTIDTVPNVKKQHEINVGISNS
FGFGGHNSVVVFAPFKP*
Sequence Length: 
518
Sequence Checksum: 
dc455712842ba65b57f44b1fd3b6cf95
View location in JBrowse: 
DCARv2_Chr2:26266125..26269173-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_006519, derives from mRNA, DCAR_006519.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AES3 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 849.351 bits (2193), Expect = 0.000e+0
Identity = 419/523 (80.11%), Postives = 450/523 (86.04%), Query Frame = 0
 
Query:    3 AATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            AATCSS LIF+++ES  N  SLF YNGLK   +KQVA     + G ISTSAPKCR +KA+ASPTV+APKRE DPKKRIVITGMG+VSVFG+D+DTFY KLLEG SGITLIDRFDASTFSVRFAGQIR FSS GYIDGKNDRRLDDCWRYCLVAGR+ALDDASLGPEVL+TMD+SRIGVLVG+GMGGLTAFSNGVEAL+QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEAD+M VGGTEAAV ATGVGGFIACRALSQRNDEP +ASRPWDK+RDGFV+GEG+GVLIMESLEHAMKRGANI+AEYLGGA+TCDAHHMTDPR DGLGVSSCI+KSLEDAGVSPEEVNYVNAHATSTLAGDLAE NAIK VFK+TSE+KMNGTK                                   SMIGHGLGA+GGLEAIATIKAI TGW        +LEP VTIDTVPNVKKQHE+NVGISNSFGFGGHNSVVVFAP++P
Sbjct:    5 AATCSSSLIFRTKESGSNRASLFHYNGLKVVESKQVA-----SPGFISTSAPKCRGIKAVASPTVSAPKREKDPKKRIVITGMGLVSVFGSDIDTFYNKLLEGESGITLIDRFDASTFSVRFAGQIRSFSSKGYIDGKNDRRLDDCWRYCLVAGRRALDDASLGPEVLETMDRSRIGVLVGTGMGGLTAFSNGVEALLQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMAVGGTEAAVMATGVGGFIACRALSQRNDEPQKASRPWDKDRDGFVMGEGAGVLIMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCISKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTK-----------------------------------SMIGHGLGASGGLEAIATIKAITTGWVHPTINQDNLEPEVTIDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPYRP 487
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B7P2 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 825.469 bits (2131), Expect = 0.000e+0
Identity = 420/521 (80.61%), Postives = 452/521 (86.76%), Query Frame = 0
 
Query:    5 TCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            +CSSGLIF+++ES  NG SL QYNGL+A  +KQVA  G KT+G ISTSAPKCR +KA+ASPTV+APKRE DPKKRIVITGMG+VSVFG+D+DT+Y KLLEG SGIT IDRFDASTFSVRFAGQIR+FSS GYIDGKNDRRLDDCWRYCLVAG++ALDDASLG EVL+TMD+SRIGVLVG+GMGGLTAFSNGVEALIQKG+KKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATAN+CFYAAANHIRRGEAD+MVVGGTEAAV ATGVGGFIACRALSQRNDEPH+ASRPWDK+RDGFVIGEGSGVLIMESLEHAMKR ANI+AE+LGGAITCDAHHMTDPR DGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAE NAIK VFK+TSE+KMNGTK                                   SMIGHGLGAAGGLEAIATIKAI TGW        +LEP VTIDTVPNVKK HE+NV ISNSFGFGGHNSVVVFAPF+P
Sbjct:   66 SCSSGLIFRTKESGTNGASLLQYNGLRAVESKQVASTGSKTNGFISTSAPKCRRIKAVASPTVSAPKREKDPKKRIVITGMGLVSVFGSDIDTYYNKLLEGESGITPIDRFDASTFSVRFAGQIREFSSKGYIDGKNDRRLDDCWRYCLVAGKRALDDASLGHEVLETMDRSRIGVLVGTGMGGLTAFSNGVEALIQKGFKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANHCFYAAANHIRRGEADIMVVGGTEAAVMATGVGGFIACRALSQRNDEPHKASRPWDKDRDGFVIGEGSGVLIMESLEHAMKREANIIAEFLGGAITCDAHHMTDPRSDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTK-----------------------------------SMIGHGLGAAGGLEAIATIKAITTGWLHPTINQYNLEPDVTIDTVPNVKKNHEVNVAISNSFGFGGHNSVVVFAPFRP 551
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZV23 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 419/523 (80.11%), Postives = 446/523 (85.28%), Query Frame = 0
 
Query:    3 AATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            A +CSSGLIF++ ES   G SL QYNGL+   +KQVA +G KT+G ISTSA KCR +KA+ASP  +APKRE DPKKRIVITGMG+VSVFGN++DTFY KLLEG SGIT IDRFDASTFSVRFAGQIRDFSS GYIDGKNDRRLDDCWRYCLVAGR+ALDDASLGPEVL+TMD+SRIGVLVGSGMGGLTAFS GVEALIQKG+KKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRR EAD+MVVGGTEAAV ATGVGGFIACRALSQRNDEP +ASRPWD+ RDGFVIGEGSGVLIMESLEHAMKRGANI+AEYLGGAITCDAHHMTDPR DGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAE NAIK VFK TSE+KMNGTK                                   SMIGHGLGAAGGLEAIATIKAI TGW        +LEP VTIDTVPNVKK+HE+NV ISNSFGFGGHNSVVVF+PF+P
Sbjct:    5 AGSCSSGLIFRTNESGNKGASLLQYNGLRPVESKQVASSGSKTNGFISTSAAKCRRIKAVASPNFSAPKREKDPKKRIVITGMGLVSVFGNEIDTFYNKLLEGESGITPIDRFDASTFSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGRRALDDASLGPEVLETMDRSRIGVLVGSGMGGLTAFSKGVEALIQKGFKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRREEADIMVVGGTEAAVMATGVGGFIACRALSQRNDEPQKASRPWDQERDGFVIGEGSGVLIMESLEHAMKRGANIIAEYLGGAITCDAHHMTDPRSDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKETSELKMNGTK-----------------------------------SMIGHGLGAAGGLEAIATIKAITTGWLHPTINQYNLEPEVTIDTVPNVKKKHEVNVAISNSFGFGGHNSVVVFSPFRP 492
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QMZ4 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 409/523 (78.20%), Postives = 451/523 (86.23%), Query Frame = 0
 
Query:    3 AATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            A +CS+GL+FK++ES  N  SLFQ+NGL+A   KQ+  +G K +  ISTSA KC+ +KAM++PTV+APKRE DPKKR+VITGMG+VSVFG+DVDTFY+KLLEG SGITLIDRFDASTFSVRFAGQIRDFSS GYIDGKNDRRLDDCWRYCLVAGR+ALDDA LGPEVL+TMD+S+IGVLVG+GMGGLTAFSNGVE+LI KGYKKI+PFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEA++MVVGGTEAAV  +GVGGFIACRALSQRNDEPH+ASRPWDK+RDGFV+GEGSGVL+MESLEHAM+RGANI+AEYLGGAITCDAHHMTDPR DGLGVSSCI+K+LEDAGVSPEEVNYVNAHATSTLAGDLAE NAIK VFK+TSE+KMNGTK                                   SMIGHGLGAAGGLEAIATIKAINTGW        +LEP VTIDTVPNVKK+HE+NV ISNSFGFGGHNSVV FAPFKP
Sbjct:    5 AGSCSTGLVFKTKESCSNKASLFQHNGLRAVEKKQLGSSGFKPNRFISTSASKCQRIKAMSAPTVSAPKREMDPKKRVVITGMGLVSVFGSDVDTFYDKLLEGESGITLIDRFDASTFSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGRRALDDAKLGPEVLETMDRSKIGVLVGTGMGGLTAFSNGVESLILKGYKKISPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEANIMVVGGTEAAVMPSGVGGFIACRALSQRNDEPHKASRPWDKDRDGFVMGEGSGVLVMESLEHAMERGANIIAEYLGGAITCDAHHMTDPRSDGLGVSSCISKALEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTK-----------------------------------SMIGHGLGAAGGLEAIATIKAINTGWLHPTINQYNLEPEVTIDTVPNVKKKHEVNVAISNSFGFGGHNSVVAFAPFKP 492
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZTG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8412107.1}))

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 415/545 (76.15%), Postives = 456/545 (83.67%), Query Frame = 0
 
Query:    3 AATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTS----------------------APKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            A TCSS L+F++RE   NG SL Q+NGL+    KQ+A  G K  G + +S                      APK RT++A+ASPTV+APKRE DPKKRIVITGMG+VSVFGND+DTFY++LLEG SGI++IDRFDASTFSVRFAGQIR+FSS GYIDGKNDRRLDDCWRYCLVAGR+AL+DA+LGPE+L+TMD+S+IGVLVGSGMGGLTAFSNGVE+LIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEA+VMVVGGTEAAV ATGVGGFIACRALSQRN EP +ASRPWDK+RDGFV+GEGSGVL+MESLEHAMKRGA IVAEYLGGAITCDAHHMTDPR DGLGVSSCI+KSLEDAGVSPEEVNYVNAHATSTLAGDLAE NA+K VFK+TSEIKMNGTKAR L     F + + I      D           +SMIGHGLGAAGGLEAIATIKAI TGW        +LEP VTIDTVPNVKK+HE+NV ISNSFGFGGHNSVVVFAPF P
Sbjct:    5 AGTCSSSLLFRTRELGENGASLVQFNGLRPVENKQMASTGSKPSGFVCSSGIFVSYVGIVECSGLTLMGSFRAPKRRTIRAVASPTVSAPKREKDPKKRIVITGMGLVSVFGNDIDTFYDRLLEGESGISIIDRFDASTFSVRFAGQIRNFSSKGYIDGKNDRRLDDCWRYCLVAGRRALEDANLGPEILETMDRSKIGVLVGSGMGGLTAFSNGVESLIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEAEVMVVGGTEAAVMATGVGGFIACRALSQRNGEPQKASRPWDKDRDGFVMGEGSGVLVMESLEHAMKRGATIVAEYLGGAITCDAHHMTDPRSDGLGVSSCISKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAVKKVFKDTSEIKMNGTKARTL---NPFTISHWISEILSQDRSAAQI-----ESMIGHGLGAAGGLEAIATIKAITTGWLHPTINQYNLEPEVTIDTVPNVKKKHEVNVAISNSFGFGGHNSVVVFAPFTP 541
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0SVD6 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0
Identity = 396/522 (75.86%), Postives = 434/522 (83.14%), Query Frame = 0
 
Query:    4 ATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            ATCS+GLI              +YNGL+   AKQV   GV ++  +S S  KCR +KAMASPTV+APKRETDPKKR+VITGMG+VSVFG D DTFY KLLEG SGITLIDRF+AS FSVRF GQIRDFSS GYIDGK+DRRLDDCWRYCLVAG++AL+DA+LGP VL+TMDK +IG L+G+GMGG+TAFS+GVE+L+QKGYKKI+PFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCF++AANHIRRGEAD+M+ GGTEAA+N TGVGGFIACRALSQRNDEPHRASRPWDKNRDGFV+GEGSGVL+MESLE A KRGA ++AEYLGGA+TCDAHHMTDPRKDGLGVS+CITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIK VFK+TSEIKMNGTK                                   SMIGH LGAAGGLEAIATIKAI TGW        DLEPSVTIDTVPNVKKQHE+NVGISNSFGFGGHNSVVVFAPFKP
Sbjct:    2 ATCSAGLI--------------RYNGLRPIEAKQVGSFGVGSNVSVSASGSKCRKIKAMASPTVSAPKRETDPKKRVVITGMGLVSVFGTDTDTFYNKLLEGQSGITLIDRFEASEFSVRFGGQIRDFSSKGYIDGKSDRRLDDCWRYCLVAGKRALEDANLGPAVLETMDKMKIGALIGTGMGGVTAFSSGVESLVQKGYKKISPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFHSAANHIRRGEADIMIAGGTEAAINPTGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVMGEGSGVLVMESLESATKRGATVIAEYLGGAVTCDAHHMTDPRKDGLGVSTCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKKVFKDTSEIKMNGTK-----------------------------------SMIGHCLGAAGGLEAIATIKAITTGWLHPTINQDDLEPSVTIDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP 474
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YAU3 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 405/525 (77.14%), Postives = 443/525 (84.38%), Query Frame = 0
 
Query:    1 MAAATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            +A   CSSGL+F++RE+ GNG SL QYN L+A  + Q++  G K    IS+SA KCRT++AMASPT +APKRE DPKKRIVITGMG+VSVFG+D + FY KLLEG SGIT IDRFDA+++SVRFAGQIRDFSS GYIDGKNDRRLDDCWRYCLVAGR+AL+DA+LG EVL+ MD+++IGVLVG+GMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEAD+MV GGTEAA+  TG+GGFIACRALSQRNDEP RASRPWDK+RDGFV+GEGSGVLIMESLEHAMKRGANI+AEYLGGA+TCDAHHMT+PR DGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAE NAIK VFK+TSEIKMNGTK                                   SMIGHGLGAAGGLEAIATIKAI TGW        +LEP V IDTVPNVKKQHE+NV ISNSFGFGGHNSVVVFAPFKP
Sbjct:    4 IATGACSSGLLFRNREAGGNGASLAQYNELRAVESLQLSSTGTKPKWFISSSASKCRTIRAMASPTASAPKREKDPKKRIVITGMGLVSVFGSDTEHFYNKLLEGESGITQIDRFDATSYSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGRRALEDANLGAEVLEKMDRTKIGVLVGTGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVAGGTEAAIMPTGIGGFIACRALSQRNDEPKRASRPWDKDRDGFVMGEGSGVLIMESLEHAMKRGANIIAEYLGGAVTCDAHHMTNPRSDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEIKMNGTK-----------------------------------SMIGHGLGAAGGLEAIATIKAITTGWVHPTINQDNLEPDVIIDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPFKP 493
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067JZ53 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 801.586 bits (2069), Expect = 0.000e+0
Identity = 404/523 (77.25%), Postives = 441/523 (84.32%), Query Frame = 0
 
Query:    3 AATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            A TCSS ++F+SR    NG SL QYNGL+     Q+A  G K+ G +STS PK RT++AMASP V+APKRE DPKKR+VITGMGVVSVFGNDVD FY KLLEG SGI+LIDRFDAS+FSVRFAGQIRDFSS GYIDGKNDRRLDDCWRYCLVAG++AL+DA+LGPEVLD MD++R GVL+G+GMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEAD+MV GGTEAAV  TGVGGFIACRALSQRND+P RASRPWDKNRDGFV+GEG+GVLIMESL+HA+KRGANI+AEYLGGA+TCDAHHMTDPR DGLGVS+CITKSLEDA VSPEEVNY+NAHATSTLAGDLAE NAIK VFK+TSEIKMNGTK                                   SMIGHGLGAAGGLEA+ATIKAI TGW        +LEP VTIDTVPN+KKQH++NVGISNSFGFGGHNSVVVFAPF P
Sbjct:    5 AGTCSSSVLFRSRS---NGASLAQYNGLRPLETVQMAPAGTKSSGFLSTSVPKSRTIRAMASPNVSAPKREKDPKKRVVITGMGVVSVFGNDVDAFYNKLLEGESGISLIDRFDASSFSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGKRALEDANLGPEVLDNMDRTRTGVLIGTGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVAGGTEAAVMPTGVGGFIACRALSQRNDDPKRASRPWDKNRDGFVMGEGAGVLIMESLDHALKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSTCITKSLEDAKVSPEEVNYINAHATSTLAGDLAEVNAIKKVFKDTSEIKMNGTK-----------------------------------SMIGHGLGAAGGLEAVATIKAITTGWLHPTINQDNLEPDVTIDTVPNLKKQHQVNVGISNSFGFGGHNSVVVFAPFTP 489
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2BUN6 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 800.816 bits (2067), Expect = 0.000e+0
Identity = 392/523 (74.95%), Postives = 437/523 (83.56%), Query Frame = 0
 
Query:    1 MAAATCSSGLIFKSRESIGNGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPF 515
            +A A CSS ++F SRE   +G SL QY GL+     Q+A  G +  G ISTSA K RT++AM S TV+APKRE DPKKR+VITGMG+VSVFG+ +DTFY+KLLEG SGI+LIDRFDAS+FSVRFAGQIRDFSS GYIDGKNDRRLDDCWRYCLVAG++AL+DA+LG EVL+ MD++RIGVLVG+GMGGLTAFSNGVE+L+QKGYKK++PFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFY+AANHIRRGEAD+MV GGTEA+V   GVGGFIACRALSQRN++P +ASRPWDK+RDGFV+GEGSGVLIMESL+HAMKRGANI+AEYLGGA+TCDAHHMTDPR DGLGVS+CI KSLED+GVSPEEVNYVNAHATSTLAGDLAE NAIK VFKNTSEIKMNGTK                                   SMIGHGLGAAG LEAIATIKAINTGW        ++E  VTIDTVPNVKKQHE+NVGISNSFGFGGHNSVVVFAPF
Sbjct:    4 IAGAACSSNVLFGSREVGSDGASLAQYRGLRPVENMQLAPTGRRPSGSISTSASKSRTIRAMVSQTVSAPKREKDPKKRVVITGMGLVSVFGSGIDTFYDKLLEGESGISLIDRFDASSFSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGKRALEDANLGSEVLENMDRTRIGVLVGTGMGGLTAFSNGVESLVQKGYKKMSPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYSAANHIRRGEADIMVAGGTEASVIPAGVGGFIACRALSQRNEDPKKASRPWDKDRDGFVMGEGSGVLIMESLDHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSTCIAKSLEDSGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKNTSEIKMNGTK-----------------------------------SMIGHGLGAAGALEAIATIKAINTGWLHPTINQDNIELDVTIDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPF 491
[Close]
BLAST of DCAR_006519 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540MSQ7 (Beta-ketoacyl-[acyl-carrier-protein] synthase I {ECO:0000256|ARBA:ARBA00013191} (2.3.1.41 {ECO:0000256|ARBA:ARBA00013191}))

HSP 1 Score: 799.275 bits (2063), Expect = 0.000e+0
Identity = 408/524 (77.86%), Postives = 445/524 (84.92%), Query Frame = 0
 
Query:    3 AATCSSGLIFKSRESIG-NGVSLFQYNGLKAAGAKQVAVNGVKTHGPISTSAPKCRTVKAMASPTVTAPKRETDPKKRIVITGMGVVSVFGNDVDTFYEKLLEGTSGITLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGRKALDDASLGPEVLDTMDKSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADVMVVGGTEAAVNATGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVIGEGSGVLIMESLEHAMKRGANIVAEYLGGAITCDAHHMTDPRKDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKSVFKNTSEIKMNGTKARNLIHAYHFNLKNVIVLFNCLDYFVPTTLFPFSQSMIGHGLGAAGGLEAIATIKAINTGW--------DLEPSVTIDTVPNVKKQHEINVGISNSFGFGGHNSVVVFAPFKP 517
            A  CSSGL+F+SRE+   NG S+ Q++GL+      + VNG K++G   TSAPKCR +KAMAS TV+APKRETDPKKR VITGMG+VSVFG+D+DTFY KLLEG SGITLIDRFDASTFSVRFAGQIR FSS GYIDGKNDRRLDDCWRY +VAG+KAL+DA+LGPEVL TMD++RIGV+VG+GMGGLTAFS GVE+LIQKGYKKI+PFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEAD+MVVGGTEAAV  TGVGGFIACRALSQRNDEPHRASRPWDKNRDGFV+GEG+GVL+MESLE A+KRGA I+AEYLGGA+TCDAHHMTDPR DGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIK VFK+TSE+K+NGTK                                   SMIGHGLGAAGGLEAIATIKAINTGW        DLEP+VTIDTVPNVKKQHE+NV ISNSFGFGGHNSVVVFAPF P
Sbjct:    5 AGPCSSGLLFRSREAGSINGASMAQFDGLRQVETMHMPVNGNKSNGLGFTSAPKCRIIKAMASSTVSAPKRETDPKKRTVITGMGLVSVFGSDIDTFYNKLLEGESGITLIDRFDASTFSVRFAGQIRGFSSKGYIDGKNDRRLDDCWRYGIVAGKKALEDANLGPEVLQTMDRTRIGVIVGTGMGGLTAFSAGVESLIQKGYKKISPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVVGGTEAAVMPTGVGGFIACRALSQRNDEPHRASRPWDKNRDGFVMGEGAGVLVMESLESALKRGAPIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEFNAIKKVFKDTSEMKINGTK-----------------------------------SMIGHGLGAAGGLEAIATIKAINTGWLHPTINQDDLEPAVTIDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPFSP 493
Match NameStatsDescription
A0A5J5AES3E-Value: 0.000e+0, PID: 80.11Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A5B7B7P2E-Value: 0.000e+0, PID: 80.61Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A5J4ZV23E-Value: 0.000e+0, PID: 80.11Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A2R6QMZ4E-Value: 0.000e+0, PID: 78.20Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A834ZTG0E-Value: 0.000e+0, PID: 76.15(Uncharacterized protein {ECO:0000313|EMBL:KAF8412... [more]
A0A7N0SVD6E-Value: 0.000e+0, PID: 75.86Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A6P5YAU3E-Value: 0.000e+0, PID: 77.14Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A067JZ53E-Value: 0.000e+0, PID: 77.25Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A2K2BUN6E-Value: 0.000e+0, PID: 74.95Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]
A0A540MSQ7E-Value: 0.000e+0, PID: 77.86Beta-ketoacyl-[acyl-carrier-protein] synthase I {E... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.