DCAR_006616

Resource Type: 
Polypeptide
Name: 
DCAR_006616
Identifier: 
DCAR_006616.mRNA-protein
Sequence: 
MAAAASSLYFPATFTADSPAFSFSARRPFKPKRMMMLVRSDLDQNVSDMS
SNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES
RPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKE
HTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALA
LSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYA
LGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYIT
QKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAAC
DVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKS
RQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPG
DPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGK
DPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEEL
ATLRKTIASIDSNTPTEAELTLV*
Sequence Length: 
574
Sequence Checksum: 
a2b442845a5e3b00c1cdc735b4a9dd25
View location in JBrowse: 
DCARv2_Chr2:27154311..27160527-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_006616, derives from mRNA, DCAR_006616.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VER6 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1177.54 bits (3045), Expect = 0.000e+0
Identity = 567/573 (98.95%), Postives = 570/573 (99.48%), Query Frame = 0
 
Query:    1 MAAAASSLYFPATFTADSPAFSFSARRPFKPKRMMMLVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDSNTPTEAELTLV 573
            MAAA+SSLYFPATFTADSP+FSFSARRPFKPKRMM+LVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLP QWRE EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEEL TLRKTIASIDSNTPTEAELTLV
Sbjct:    1 MAAASSSLYFPATFTADSPSFSFSARRPFKPKRMMLLVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELTTLRKTIASIDSNTPTEAELTLV 573
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX8 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1084.32 bits (2803), Expect = 0.000e+0
Identity = 522/575 (90.78%), Postives = 542/575 (94.26%), Query Frame = 0
 
Query:    1 MAAAASSLYFPATFTADSPAFSFSARRPFKPKRM--MMLVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDSNTPTEAELTLV 573
            MAAA SS+YFPAT   DS   S S  RP    R   +M+VRSDL++NVSDMS+NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSF DKRGNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVK+HTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNA+ALALSPVVRALVDPDGAM+DIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKK+VKADAYVAACDVPGIKRLLP QWRE EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLE+SRQLR AAGLDNLLY+PDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPN +IIERVTKQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQ+TPV NFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGE+L  L+K I  I+SNTPT AEL+LV
Sbjct:    1 MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGAELSLV 575
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q8H0Q6 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1018.45 bits (2632), Expect = 0.000e+0
Identity = 493/578 (85.29%), Postives = 528/578 (91.35%), Query Frame = 0
 
Query:    8 LYFPATFTADSPAFSFS--------ARRPFKPKRMMM---LVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDS-NTPTEAELTLV 573
            L FPAT  A + + SF          RR  +  R+ +   ++RSDLD++VSDM +NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DK+GNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVK+HTHTFVNKGGE+GELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAM  IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYI +KGGRFHLRWGCREILYEKS++G TY++G+AMSKATQKKIVKADAY+AACDVPGIKRLLP  WRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLE+SRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN++II RV+KQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGEELA LRK +A+I S +     EL+LV
Sbjct:   11 LCFPATSAAGTRS-SFHTTTSTLLRCRRSRQLTRLKVRKAVIRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKSANGDTYVTGLAMSKATQKKIVKADAYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKVLAAIQSIDNVGVDELSLV 587
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRQ4 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1016.91 bits (2628), Expect = 0.000e+0
Identity = 493/584 (84.42%), Postives = 523/584 (89.55%), Query Frame = 0
 
Query:    4 AASSLYFPATFTADSPAFS-------FSARRPFKPKRMMML--VRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDSNTPTEA-----ELTLV 573
            A+SS  FPAT       F         S RRP    +      V++ LD N+SDMS NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DKRGNHIEMGLHVFFGCYNNLFRL+KKVGADKNLLVKEH+HTFVNKGGEIGELDFRFP+GAPLHGI AFL+TNQLKTYDKARNA+ALALSPVVRALVDPDGAM+DIRNLD+ISFS+WFLSKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPI+ YIT KGGRFHLRWGCREILY+KS+DG TY++GIAMSKATQKKIVKADAYVAACDVPGIKRL+PPQWRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLE+SRQLRQA GLDNLLYTPDADFSCFADLAL SPEDYYLEGQGSLLQCVLTPGDPYMPLPN+ II+RV KQV  LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFL+GSYTKQDYIDSMEGATLSGRQASA+ICDAGEEL  LRK +A+IDS   TEA     EL+LV
Sbjct:    2 ASSSFCFPATSAGTRTTFRTDTTRFFLSGRRPVTQLKAQRSDDVKTSLDTNISDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKEHSHTFVNKGGEIGELDFRFPIGAPLHGIQAFLSTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDSISFSDWFLSKGGTRMSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIKKYITDKGGRFHLRWGCREILYDKSADGDTYVTGIAMSKATQKKIVKADAYVAACDVPGIKRLVPPQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAVGLDNLLYTPDADFSCFADLALTSPEDYYLEGQGSLLQCVLTPGDPYMPLPNEAIIKRVAKQVYALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQASAFICDAGEELVALRKQLAAIDSKGLTEATHTTDELSLV 585
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZTU2 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1016.91 bits (2628), Expect = 0.000e+0
Identity = 493/584 (84.42%), Postives = 522/584 (89.38%), Query Frame = 0
 
Query:    4 AASSLYFPATFTADSPAFS-------FSARRPFKPKRMMML--VRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDSN-----TPTEAELTLV 573
            A+SS  FPAT       F         S RRP    +      VR+ LD N+SDMS NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DKRGNHIEMGLHVFFGCYNNLFRL+KKVGADKNLLVKEH+HTFVNKGGEIGELDFRFP+GAPLHGI AFL+TNQLKTYDKARNA+ALALSPVVRALVDPDGAM+DIRNLD+ISFS+WFLSKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPI+ YIT KGGRFHLRWGCREILY+KS+DG TY++GIAMSKATQKKIVKADAYVAACDVPGIKRL+PPQWRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLE+SRQLRQA GLDNLLYTPDADFSCFADLAL SPEDYYLEGQGSLLQCVLTPGDPYMPLPN+ II+RV KQV  LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFL+GSYTKQDYIDSMEGATLSGRQASA+ICDAGEEL  LRK +A+IDS      T T  EL+LV
Sbjct:    2 ASSSFCFPATSAGTRTTFRTDTTRFFLSGRRPVTQLKAQRSDDVRTSLDTNISDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKEHSHTFVNKGGEIGELDFRFPIGAPLHGIQAFLSTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDSISFSDWFLSKGGTRMSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIKKYITDKGGRFHLRWGCREILYDKSADGDTYVTGIAMSKATQKKIVKADAYVAACDVPGIKRLVPPQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAVGLDNLLYTPDADFSCFADLALTSPEDYYLEGQGSLLQCVLTPGDPYMPLPNEAIIKRVAKQVYALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQASAFICDAGEELVALRKQLAAIDSKGLAEATHTTDELSLV 585
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: U6BQI7 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1016.14 bits (2626), Expect = 0.000e+0
Identity = 492/578 (85.12%), Postives = 527/578 (91.18%), Query Frame = 0
 
Query:    8 LYFPATFTADSPAFSFS--------ARRPFKPKRMMM---LVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDS-NTPTEAELTLV 573
            L FPAT  A + + SF          RR  +  R+ +   ++RSDLD++VSDM +NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DK+GNHIEMGLHVFFGCYNNLFRLLKKVGA KNLLVK+HTHTFVNKGGE+GELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAM  IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYI +KGGRFHLRWGCREILYEK+++G TY++G+AMSKATQKKIVKADAY+AACDVPGIKRLLP  WRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLE+SRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN++II RV+KQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGEELA LRK +A+I S +     EL+LV
Sbjct:   11 LCFPATSAAGTRS-SFHTTTSTLLRCRRSRQLTRLKVRKAVIRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAKKNLLVKDHTHTFVNKGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKAANGDTYVTGLAMSKATQKKIVKADAYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKVLAAIQSIDNVGVDELSLV 587
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RBF8 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1016.14 bits (2626), Expect = 0.000e+0
Identity = 492/578 (85.12%), Postives = 525/578 (90.83%), Query Frame = 0
 
Query:    4 AASSLYFPAT--FTADSPAFSFS-ARRPFKPKRMMMLVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDSNTPTEA-----ELTLV 573
            A SSL FPAT     D      S  RR  + K     VR  LD+ VSDMS NAPKGLFP EP+ Y+GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVK+HTHTFVN+GGEIGELDFRFPVGAPLHGINAFL+TNQLKTYDKARNA+ALALSPVVRALVDPDGA++DIR+LD+ISFS+WF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIF+LFATKTEASLLRMLKGSPD YLSGPIR YIT KGGRFHLRWGCREIL+++S+DG+TY++GIAMSKATQKKIVKADAYVAACDVPGIKRL+PPQWRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLE+SRQLRQAAGL+NLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPND+II+RV KQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEEL  LRK +A+ +S   T A     EL+LV
Sbjct:    2 ATSSLCFPATSGLRTDVAGIVLSDRRRGTRLKSQRFGVRCSLDEKVSDMSVNAPKGLFPLEPEHYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKDHTHTFVNRGGEIGELDFRFPVGAPLHGINAFLSTNQLKTYDKARNALALALSPVVRALVDPDGALRDIRDLDSISFSDWFMSKGGTRASIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILHKRSTDGETYVTGIAMSKATQKKIVKADAYVAACDVPGIKRLVPPQWRELEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLNNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDEIIKRVAKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVNNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELVALRKKLAATESMALTGASYVTDELSLV 579
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q8RVY5 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1014.99 bits (2623), Expect = 0.000e+0
Identity = 491/578 (84.95%), Postives = 527/578 (91.18%), Query Frame = 0
 
Query:    8 LYFPATFTADSPAFSFS--------ARRPFKPKRMMM---LVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDS-NTPTEAELTLV 573
            L FPAT  A + + SF          RR  +  R+ +   ++RSDLD++VSDM +NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELL+QGHEVDIYESR FIGGKVGSF DK+GNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVK+HTHTFVNKGGE+GELDFRFPVGAPLHGINAFLTTN LKTYDKARNAVALALSPVVRALVDPDGAM  IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYI +KGGRFHLRWGCREILYEKS++G TY++G+AMSKATQKKIVKADAY+AACDVPGIKRLLP  WRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLE+SRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN++II RV+KQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGEELA LRK +A+I S +     EL+LV
Sbjct:   11 LCFPATSAAGTRS-SFHTTTSTLLRCRRSRQLTRLKVRKAVIRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLNQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGELGELDFRFPVGAPLHGINAFLTTNHLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKSANGDTYVTGLAMSKATQKKIVKADAYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKVLAAIQSIDNVGVDELSLV 587
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9FV46 (Zeta-carotene desaturase, chloroplastic/chromoplastic (1.3.5.6) (9,9'-di-cis-zeta-carotene desaturase) (Carotene 7,8-desaturase) (Precursor))

HSP 1 Score: 1014.22 bits (2621), Expect = 0.000e+0
Identity = 486/565 (86.02%), Postives = 521/565 (92.21%), Query Frame = 0
 
Query:    8 LYFPATFTADSPAFSFSA-------RRPFKPKRMMM---LVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDS 562
            L FPAT  A +   SF         RR  +  R+ +   +VRSDLD++VSDM +NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DK+GNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVK+HTHTFVN+GGE+GELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAM  IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYI +KGGRFHLRWGCREILYEKS++G+TY++G+AMSKATQK+IVKAD Y+AACDVPGIKRLLP  WRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QD+E+SRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN++II RV+KQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGEELA LRK +A+I S
Sbjct:   12 LCFPATSAAGART-SFRTTDTFLRYRRSRQLTRLKVRKAVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNRGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKSANGETYVTGLAMSKATQKQIVKADVYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDVERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQS 575
[Close]
BLAST of DCAR_006616 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7M8G7 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))

HSP 1 Score: 1012.68 bits (2617), Expect = 0.000e+0
Identity = 486/576 (84.38%), Postives = 524/576 (90.97%), Query Frame = 0
 
Query:    8 LYFPATFTA---------DSPAFSFSARRPFKPKRMMMLVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPPQWRESEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELATLRKTIASIDS-NTPTEAELTLV 573
            L+FPAT TA         D+      +R+  + K    +VRSDLD++VSDM +NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF DKRGNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVK+HTHTFVN+GGE+GELDFRFPVGAPLHGINAFLTTNQL TYDKARNA+ALALSPVVRALVDPDGAM  IRNLDN+SFSEWF+SKGGTRKSIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYI +KGGRFHLRWGCREILY+KS++G TY++G+AMSKATQKK VKAD Y+AACDVPGIKRLLP  WRE EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLE+SRQ R+A GLDNLLYTPDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN++II RV KQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQKTPV NFFLAGSYTKQDYIDSMEGATLSGRQASA++CDAGEELA LRK +A+I++ +T    ELTLV
Sbjct:   12 LWFPATSTAGTRNSFPNTDTFLRCRRSRQLTRLKTHKSVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNRGGELGELDFRFPVGAPLHGINAFLTTNQLNTYDKARNALALALSPVVRALVDPDGAMTQIRNLDNVSFSEWFMSKGGTRKSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYDKSANGDTYVTGLAMSKATQKKTVKADVYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQSRKATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVEKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFVCDAGEELAALRKQLAAIEAMDTIAADELTLV 587
Match NameStatsDescription
Q2VER6E-Value: 0.000e+0, PID: 98.95Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
Q2VEX8E-Value: 0.000e+0, PID: 90.78Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
Q8H0Q6E-Value: 0.000e+0, PID: 85.29Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
A0A5B6ZRQ4E-Value: 0.000e+0, PID: 84.42Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
A0A5B6ZTU2E-Value: 0.000e+0, PID: 84.42Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
U6BQI7E-Value: 0.000e+0, PID: 85.12Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
A0A2R6RBF8E-Value: 0.000e+0, PID: 85.12Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
Q8RVY5E-Value: 0.000e+0, PID: 84.95Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]
Q9FV46E-Value: 0.000e+0, PID: 86.02Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A6S7M8G7E-Value: 0.000e+0, PID: 84.38Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.