MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLY
FKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAK
LRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQET
GAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALA
AKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDL
TWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDS
FKGNPAWKDCHHIGIVLSGGNVDLGTLWDSLC*
| Relationships |
|---|
| The polypeptide, DCAR_000604, derives from mRNA, DCAR_000604. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A835D1I2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8380262.1}))
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 271/331 (81.87%), Postives = 302/331 (91.24%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME ++ E Y DI +I+EAQVRI+ FIH TP+LSSE+LNS AGR+L+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP CKVENV+RYGG +I SEAT+QSRE A++VLQ+TGAVL+HP+ND RIISGQGTISLELL+Q P IDTIIVPISGGGLISGV LAAKSINPNIR+FAAEP GANDAAQSK+AGRIITLPETNTIADGLRA LGDLTWPIVRDLVDDII VEDKEI++AMRLCYEILKVAVEPSGAIGLAAVLSDSF+ NPAWKDC++IGI+LSGGNVDLG LW+SL
Sbjct: 147 METKSQLDSEKYAADILSIREAQVRINSFIHRTPILSSESLNSIAGRRLFFKCECFQKGGAFKFRGACNAIFSLKDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPKCKVENVKRYGGQVIWSEATIQSRESVATKVLQQTGAVLVHPFNDGRIISGQGTISLELLEQVPQIDTIIVPISGGGLISGVTLAAKSINPNIRVFAAEPSGANDAAQSKEAGRIITLPETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDKEIVEAMRLCYEILKVAVEPSGAIGLAAVLSDSFRKNPAWKDCNNIGIILSGGNVDLGVLWESL 477
Match: A0A5B6YG83 ((Putative serine racemase isoform X1 {ECO:0000313|EMBL:MPA30774.1}) (5.1.1.18 {ECO:0000313|EMBL:MPA30774.1}))
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 277/331 (83.69%), Postives = 303/331 (91.54%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME ++ GE Y DIS+I+EAQ RI+ FIH+TPVLSSETLNS AGRKL+FKCECFQKGGAFKFRGA NA+ SLD+++AAKGVVTHSSGNHAAAL+LAAKLRGIPAYI+IPKNAP CKVENV RYGG +I SEATMQSRE+ A++VLQETGAVL+HPYND RIISGQGTISLELL+QAP IDTIIVPISGGGLISGVALAAKSINP IR+ AAEPRGANDAAQSK AGRIITLPETNTIADGLRA LGDLTWP+VRDLVDDII VEDKEII+AM+LCYEILKVAVEPSGAIGLAAVLSDSF+ NP+WKDC HIGI+LSGGNVDLG LWDS
Sbjct: 1 METRSQIRGEEYAADISSIREAQARINSFIHSTPVLSSETLNSIAGRKLHFKCECFQKGGAFKFRGACNAIFSLDDERAAKGVVTHSSGNHAAALALAAKLRGIPAYIVIPKNAPKCKVENVMRYGGQVIWSEATMQSREDIATKVLQETGAVLVHPYNDGRIISGQGTISLELLEQAPQIDTIIVPISGGGLISGVALAAKSINPAIRVLAAEPRGANDAAQSKAAGRIITLPETNTIADGLRAFLGDLTWPVVRDLVDDIITVEDKEIIEAMQLCYEILKVAVEPSGAIGLAAVLSDSFRKNPSWKDCGHIGIILSGGNVDLGVLWDSF 331
Match: A0A200R8U4 ((Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily {ECO:0000313|EMBL:OVA19157.1}))
HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 270/331 (81.57%), Postives = 296/331 (89.43%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
MEV + Y DIS+IKEAQVRI+ FI TPVLSSETLNS AGR+L+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAPNCKVENVRRYGG +I SEATMQSRE A VLQETGAVL+HP+ND RIISGQGTISLELL+Q P IDT+IVPISGGGLISGVALAAKSINP+IR+ AAEPRGANDAAQSK AG+I+TLPETNTIADGLRA LGDLTWPIVRDLVDD+I VEDKEII AM++CYEILKVAVEPSGAIGLAAVLSD+F NPAWKDC++I I+LSGGNVDLG LW+S
Sbjct: 1 MEVKDQLQSGNYAADISSIKEAQVRINSFIQKTPVLSSETLNSIAGRRLFFKCECFQKGGAFKFRGACNAIFSLGDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPNCKVENVRRYGGKVIWSEATMQSRESIAKMVLQETGAVLVHPFNDGRIISGQGTISLELLEQIPQIDTLIVPISGGGLISGVALAAKSINPSIRVLAAEPRGANDAAQSKAAGKIVTLPETNTIADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIGAMKMCYEILKVAVEPSGAIGLAAVLSDTFLKNPAWKDCNNIAIILSGGNVDLGVLWESF 331
Match: A0A2P6P735 ((Putative ammonia-lyase, Serine racemase {ECO:0000313|EMBL:PRQ17736.1}) (4.3.1.- {ECO:0000313|EMBL:PRQ17736.1}) (5.1.1.18 {ECO:0000313|EMBL:PRQ17736.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 271/331 (81.87%), Postives = 294/331 (88.82%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELL-KQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDS 330
ME ++ Y DIS+IKEAQ RI PFIH TPVLSSETLN +GR+L+FKCECFQKGGAFKFRGA NAV SLD+DQAAKGVVTHSSGNHAAALS AAKLRGIPAYI+IPKNAP CKVENV RYGG +I SE TMQSRE TA++VLQETGAVLLHPYND+RIISGQGTISLELL +Q P +D I+VPISGGGLISGVALAAKSINP IR+FAAEP GANDAAQSK+AGRIITL ETNT+ADGLRA LGDLTWPIVRDLVD I+ VEDKEII AM+LCYEILKVAVEPSGAIGLAAVLSDSFK NPAWKDC +IGI+LSGGNVDLG +WDS
Sbjct: 30 MEAESQMREIKYAADISSIKEAQARIKPFIHETPVLSSETLNLLSGRQLFFKCECFQKGGAFKFRGACNAVFSLDDDQAAKGVVTHSSGNHAAALSFAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEPTMQSRESTAAKVLQETGAVLLHPYNDRRIISGQGTISLELLEQQVPHLDAIVVPISGGGLISGVALAAKSINPAIRVFAAEPEGANDAAQSKEAGRIITLSETNTVADGLRAFLGDLTWPIVRDLVDGIVTVEDKEIINAMKLCYEILKVAVEPSGAIGLAAVLSDSFKNNPAWKDCTNIGIILSGGNVDLGIIWDS 360
Match: D7TW10 (PALP domain-containing protein {ECO:0000259|Pfam:PF00291})
HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 278/331 (83.99%), Postives = 304/331 (91.84%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME E + Y DIS+I+EAQVRI+ FIH TPVL+SETLNS AGR L+FKCECFQKGGAFKFRGA NA+ SLD++QAAKGVVTHSSGNHAAALSLAAKLRGIPAYI+IP+NAP CKVENV RYGG +I S ATMQSRE+ A+RVLQETGAVLLHPYND RIISGQGT+SLELL+QAP IDTI+VPISGGGLISGVALAAKSINP+IR+FAAEP+GANDAAQSK AGRIITLPETNTIADGLRASLGDLTWP+VRDLVDDIIVVEDKEII+AM+LCYEILKVAVEPSGAIGLAAVLSDSFK NPAWK+C ++GIVLSGGNVDLG LWDSL
Sbjct: 1 MEAENEIRSKRYAADISSIREAQVRINSFIHKTPVLTSETLNSLAGRGLFFKCECFQKGGAFKFRGACNAIFSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPRCKVENVIRYGGQVIWSRATMQSREDIATRVLQETGAVLLHPYNDGRIISGQGTVSLELLEQAPQIDTIMVPISGGGLISGVALAAKSINPSIRVFAAEPKGANDAAQSKNAGRIITLPETNTIADGLRASLGDLTWPVVRDLVDDIIVVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDSFKKNPAWKNCRNVGIVLSGGNVDLGVLWDSL 331
Match: A0A438BZK8 ((Serine racemase {ECO:0000313|EMBL:RVW16383.1}))
HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 276/331 (83.38%), Postives = 303/331 (91.54%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME E + Y DIS+I+EAQVRI+ IH TPVL+SETLNS AGR L+FKCECFQKGGAFKFRGA NA+ SLD++QAAKGVVTHSSGNHAAALSLAAKLRGIPAYI+IP+NAP CKVENV RYGG +I S ATMQSRE+ A+RVLQETGAVLLHPYND RIISGQGT+SLELL+QAP IDTI+VPISGGGLISGVALAAKSINP+IR+FAAEP+GANDAAQSK AGRIITLPETNTIADGLRASLGDLTWP+VRDLVDDIIVVEDKEII+AM+LC+EILKVAVEPSGAIGLAAVLSDSFK NPAWK+C ++GIVLSGGNVDLG LWDSL
Sbjct: 1 MEAENEIRSKRYAADISSIREAQVRINSLIHKTPVLTSETLNSLAGRGLFFKCECFQKGGAFKFRGACNAIFSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPRCKVENVIRYGGQVIWSRATMQSREDIATRVLQETGAVLLHPYNDGRIISGQGTVSLELLEQAPQIDTIMVPISGGGLISGVALAAKSINPSIRVFAAEPKGANDAAQSKNAGRIITLPETNTIADGLRASLGDLTWPVVRDLVDDIIVVEDKEIIEAMKLCFEILKVAVEPSGAIGLAAVLSDSFKKNPAWKNCRNVGIVLSGGNVDLGVLWDSL 331
Match: A0A1U7ZMT7 ((serine racemase {ECO:0000313|RefSeq:XP_010255424.1, ECO:0000313|RefSeq:XP_010255425.1}))
HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 262/331 (79.15%), Postives = 294/331 (88.82%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME + + E Y DIS+IK+A RISPFIH TPVLSSE+LN AG+KL+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP CKVENVRRYGG +I SEATM SRE A+++LQETGA ++HP+ND RIISGQGTISLELL+Q P IDTI+VPISGGGLISGVALAAKSINP+IR+ AAEPRGA+DAA+SK AG+I+ L ETNTIADGLRA LGDLTWPIVRDLVDDII VEDKEII+AMR+CYEILKVAVEPSGAIGLAAVLSD F+ NPAW +C HIGI+LSGGNVDLG LW+SL
Sbjct: 1 MEAKHQLHSENYAADISSIKDAHGRISPFIHRTPVLSSESLNYIAGKKLFFKCECFQKGGAFKFRGACNAIFSLMDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPKCKVENVRRYGGQVIWSEATMPSRESVAAKILQETGAAMVHPFNDGRIISGQGTISLELLEQVPQIDTIVVPISGGGLISGVALAAKSINPSIRVLAAEPRGADDAARSKAAGKIVKLSETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDKEIIEAMRMCYEILKVAVEPSGAIGLAAVLSDGFQKNPAWNECKHIGIILSGGNVDLGVLWESL 331
Match: A0A822XGT9 ((Uncharacterized protein {ECO:0000313|EMBL:DAD18883.1}))
HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 262/331 (79.15%), Postives = 294/331 (88.82%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME + + E Y DIS+IK+A RISPFIH TPVLSSE+LN AG+KL+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP CKVENVRRYGG +I SEATM SRE A+++LQETGA ++HP+ND RIISGQGTISLELL+Q P IDTI+VPISGGGLISGVALAAKSINP+IR+ AAEPRGA+DAA+SK AG+I+ L ETNTIADGLRA LGDLTWPIVRDLVDDII VEDKEII+AMR+CYEILKVAVEPSGAIGLAAVLSD F+ NPAW +C HIGI+LSGGNVDLG LW+SL
Sbjct: 31 MEAKHQLHSENYAADISSIKDAHGRISPFIHRTPVLSSESLNYIAGKKLFFKCECFQKGGAFKFRGACNAIFSLMDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPKCKVENVRRYGGQVIWSEATMPSRESVAAKILQETGAAMVHPFNDGRIISGQGTISLELLEQVPQIDTIVVPISGGGLISGVALAAKSINPSIRVLAAEPRGADDAARSKAAGKIVKLSETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDKEIIEAMRMCYEILKVAVEPSGAIGLAAVLSDGFQKNPAWNECKHIGIILSGGNVDLGVLWESL 361
Match: A0A6P6TZK5 ((serine racemase-like {ECO:0000313|RefSeq:XP_027083249.1, ECO:0000313|RefSeq:XP_027083251.1}))
HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 259/332 (78.01%), Postives = 296/332 (89.16%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSLC 332
ME ++ + Y DIS+I+EAQ+RI+ + H TPVLSSETLNS GRKLYFKCECFQKGGAFKFRGA NA+LSLD+ QAAKGVVTHSSGNHAAALSLAAK+RGIPAY+++PKNAP CKVEN+RRYGG II SEA ++SREETA++VLQETGAV++HPYND RIISGQGTISLELL+Q IDTIIVP+SGGGLISGVA+AAKS+ P+IRI AAEP+GA+DAAQSK AG I+ LPET TIADGLRASLG+ TWP+VRDLVDDIIVVED EI++AMR CYEILKVAVEPSGAIGLAAVLSDSF+ NPAWKD HIGI++SGGN+DLG LWDSLC
Sbjct: 1 MEADSLTSTKKYAADISSIREAQLRINSYAHKTPVLSSETLNSFCGRKLYFKCECFQKGGAFKFRGACNAILSLDDSQAAKGVVTHSSGNHAAALSLAAKIRGIPAYVVVPKNAPKCKVENIRRYGGQIIWSEAAIESREETATKVLQETGAVMIHPYNDGRIISGQGTISLELLEQVLEIDTIIVPVSGGGLISGVAIAAKSLKPSIRILAAEPKGADDAAQSKAAGEIVKLPETKTIADGLRASLGEFTWPVVRDLVDDIIVVEDSEIVEAMRHCYEILKVAVEPSGAIGLAAVLSDSFRNNPAWKDSEHIGIIVSGGNLDLGILWDSLC 332
Match: A0A2G5CSB7 (PALP domain-containing protein {ECO:0000259|Pfam:PF00291})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 261/330 (79.09%), Postives = 295/330 (89.39%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDS 330
ME N Y DIS+IK+A++RI FIH TP++SSE LNS +GRKL+FKCECFQKGGAFKFRGASNA+ SL NDQA KGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP+CKVENVRRYGG I SEATMQSRE +++V+++TGA+L+HP+ND RIISGQGTISLELL+Q P IDTIIVPISGGGLISGVALAAK+I P+IRI AAEPRGANDAAQSK AGRIITLPETNTIADGLRA LGDLTWPIVRDLVD++IVVEDKEI+QAM++CYEILKVAVEPSGAIGLAAVLS SF+ NPAWKDC +I I++SGGNVDLG LW+S
Sbjct: 1 MENNGHIQSGKYAADISSIKDAKLRIESFIHKTPIMSSEYLNSVSGRKLFFKCECFQKGGAFKFRGASNAIFSLGNDQAVKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPDCKVENVRRYGGKIFWSEATMQSRESVSTKVMEDTGAILIHPFNDGRIISGQGTISLELLEQIPQIDTIIVPISGGGLISGVALAAKAIKPSIRILAAEPRGANDAAQSKAAGRIITLPETNTIADGLRAFLGDLTWPIVRDLVDEVIVVEDKEIVQAMKMCYEILKVAVEPSGAIGLAAVLSHSFQQNPAWKDCSNIAIIVSGGNVDLGILWES 330
| Match Name | Stats | Description |
|---|---|---|
| A0A835D1I2 | E-Value: 0.000e+0, PID: 81.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8380... [more] |
| A0A5B6YG83 | E-Value: 0.000e+0, PID: 83.69 | (Putative serine racemase isoform X1 {ECO:0000313|... [more] |
| A0A200R8U4 | E-Value: 0.000e+0, PID: 81.57 | (Tryptophan synthase beta subunit-like PLP-depende... [more] |
| A0A2P6P735 | E-Value: 0.000e+0, PID: 81.87 | (Putative ammonia-lyase, Serine racemase {ECO:0000... [more] |
| D7TW10 | E-Value: 0.000e+0, PID: 83.99 | PALP domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A438BZK8 | E-Value: 0.000e+0, PID: 83.38 | (Serine racemase {ECO:0000313|EMBL:RVW16383.1})[more] |
| A0A1U7ZMT7 | E-Value: 0.000e+0, PID: 79.15 | (serine racemase {ECO:0000313|RefSeq:XP_010255424.... [more] |
| A0A822XGT9 | E-Value: 0.000e+0, PID: 79.15 | (Uncharacterized protein {ECO:0000313|EMBL:DAD1888... [more] |
| A0A6P6TZK5 | E-Value: 0.000e+0, PID: 78.01 | (serine racemase-like {ECO:0000313|RefSeq:XP_02708... [more] |
| A0A2G5CSB7 | E-Value: 0.000e+0, PID: 79.09 | PALP domain-containing protein {ECO:0000259|Pfam:P... [more] |
Pages
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |