DCAR_002852

Resource Type: 
Polypeptide
Name: 
DCAR_002852
Identifier: 
DCAR_002852.mRNA-protein
Sequence: 
MAFKPFLSSSFTSILLIFLLPLLFSSVAKAADICASTPYPSLCRSLPNNN
NATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCR
VLAELNVDNILESSKVISQAQSLSTSEMESVHTLMSSILTNAQTCLDGLE
QAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTL
GAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGT
GDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIG
DGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQ
AVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNA
AAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLA
SSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYY
AEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGV
PYSSGL*
Sequence Length: 
557
Sequence Checksum: 
4f4f8958e23c7fc2de88a2521bde0122
View location in JBrowse: 
DCARv2_Chr1:33448348..33450304-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_002852, derives from mRNA, DCAR_002852.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BMS7 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 351/534 (65.73%), Postives = 413/534 (77.34%), Query Frame = 0
 
Query:   25 SSVAKAADICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            SS      IC STPYPS CRS LPNNN  +ANVY+YGRSS   SLS AR FLSL   +LQ++S LT  AI AL+DC++LA+LN+D +L S K + S A +L   + + V TL+S+ILTN QTCLDGL   A SWS+K+G+ IPL N T+LYSVSL+LF  GWVPK     +    + L  F  GR P K + Q    +E +  RKLLQ    D ++V++IVIVSQDGTG+F+TIN+A++ AP  +  ++GYF+IYVTAG+YEEYV I KN KY+MMIGDGINQTVITGN S  DG+TTFNS+TFAVVG GFVAVNIT RNTAG   HQAVA+R+GADLSTFYSCSFE YQDTLY HS RQ Y ECDIYGTVDFIFGNAAAV Q+CN+YPRLP++GQFNAITAQGRTD NQNTG SI NC IRAADDLASS+ STQTYLGRPWK YSRTVYMQS+MD  IN LGWHEW G FAL+T YYAE++NTGP S+T+GRVTW GY   +N T+AA FTV+NF+  DDWLP TGVPY+ GL
Sbjct:   33 SSPVSPGTICRSTPYPSFCRSVLPNNN--SANVYEYGRSSVRKSLSSARKFLSLIDKYLQQSSTLTTSAIHALQDCQLLAQLNMDFLLSSFKTVNSTATTLPILKADDVQTLLSAILTNTQTCLDGLRDTAESWSVKNGLYIPLANDTRLYSVSLALFTKGWVPKNKKGTLKPHKKHL-PFRKGRLPLKMSSQNQAIYESVSRRKLLQ-ASDDLVLVTDIVIVSQDGTGNFTTINDAVAAAPTNSDGTSGYFLIYVTAGIYEEYVLIAKNKKYLMMIGDGINQTVITGNHSYVDGWTTFNSSTFAVVGQGFVAVNITIRNTAGAIKHQAVAVRNGADLSTFYSCSFEAYQDTLYAHSLRQLYRECDIYGTVDFIFGNAAAVFQNCNMYPRLPMTGQFNAITAQGRTDPNQNTGISIHNCTIRAADDLASSNSSTQTYLGRPWKEYSRTVYMQSYMDGSINPLGWHEWVGDFALNTSYYAEFNNTGPGSNTAGRVTWPGYH-IINATDAANFTVSNFLLADDWLPQTGVPYTGGL 561
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HZ63 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 359/546 (65.75%), Postives = 420/546 (76.92%), Query Frame = 0
 
Query:   13 SILLIFLLPLLFSSVAKAAD-ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            S ++IFL   LFSS + A D IC STP PS C+ L  +N  +ANVYDYGRSS   S++ +R FLSL   +L   S+L+  A+ AL+DCR L  LN+D +L SS+V  + ++ LS  E + V TL+S++LTN QTCLDGL++ + SWS+K+GVS PL N TKLY VSLSLF  GWVPK     V  A + L  F NGR P K + Q    +E L  RKLL D G D + +S+IV V+QDG+G+F+TIN+A+++APN T  S GYFVIY+ AGVYEEYVSI KN KY+MMIGDGINQTVITGNRSV DG+TTFNSATFAVV  GFVAVNITFRNTAG A HQAVA+RSGADLSTFY CSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLPLSGQFNAITAQGRTD NQNTG SI NC IRAADDLA+S+G+T+TYLGRPWK YSRTVYMQS M SLIN  GW  WSG FAL TLYYAEY+NTGP S+TS RVTW+GY   +  ++AA FTV NF+ G DWLP TGVPY+ GL
Sbjct:   73 SAIVIFLA--LFSSTSLADDSICQSTPDPSSCKGLVQSNK-SANVYDYGRSSLKKSIATSRKFLSLVDKYLSARSNLSAAAVRALQDCRFLGGLNLDYLLSSSQVADANSKILSVLEADDVQTLLSALLTNQQTCLDGLQETSSSWSVKNGVSTPLSNDTKLYRVSLSLFTKGWVPKQKKGKVVKARKHL-PFGNGRLPLKMSSQNRKLYESLSNRKLL-DTGNDQVSISDIVTVNQDGSGNFATINDAIAVAPNNTDGSNGYFVIYIQAGVYEEYVSIAKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPLSGQFNAITAQGRTDPNQNTGTSIHNCVIRAADDLAASNGTTKTYLGRPWKEYSRTVYMQSNMGSLINPSGWSIWSGDFALSTLYYAEYNNTGPGSNTSNRVTWSGYH-VIGPSDAANFTVGNFLLGGDWLPQTGVPYTGGL 612
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438F3N1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 359/546 (65.75%), Postives = 420/546 (76.92%), Query Frame = 0
 
Query:   13 SILLIFLLPLLFSSVAKAAD-ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            S ++IFL   LFSS + A D IC STP PS C+ L  +N  +ANVYDYGRSS   S++ +R FLSL   +L   S+L+  A+ AL+DCR L  LN+D +L SS+V  + ++ LS  E + V TL+S++LTN QTCLDGL++ + SWS+K+GVS PL N TKLY VSLSLF  GWVPK     V  A + L  F NGR P K + Q    +E L  RKLL D G D + +S+IV V+QDG+G+F+TIN+A+++APN T  S GYFVIY+ AGVYEEYVSI KN KY+MMIGDGINQTVITGNRSV DG+TTFNSATFAVV  GFVAVNITFRNTAG A HQAVA+RSGADLSTFY CSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLPLSGQFNAITAQGRTD NQNTG SI NC IRAADDLA+S+G+T+TYLGRPWK YSRTVYMQS M SLIN  GW  WSG FAL TLYYAEY+NTGP S+TS RVTW+GY   +  ++AA FTV NF+ G DWLP TGVPY+ GL
Sbjct:   73 SAIVIFLA--LFSSTSLADDSICQSTPDPSSCKGLVQSNK-SANVYDYGRSSLKKSIATSRKFLSLVDKYLSARSNLSAAAVRALQDCRFLGGLNLDYLLSSSQVADANSKILSVLEADDVQTLLSALLTNQQTCLDGLQETSSSWSVKNGVSTPLSNDTKLYRVSLSLFTKGWVPKQKKGKVVKARKHL-PFGNGRLPLKMSSQNRKLYESLSNRKLL-DTGNDQVSISDIVTVNQDGSGNFATINDAIAVAPNNTDGSNGYFVIYIQAGVYEEYVSIAKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPLSGQFNAITAQGRTDPNQNTGTSIHNCVIRAADDLAASNGTTKTYLGRPWKEYSRTVYMQSNMGSLINPSGWSIWSGDFALSTLYYAEYNNTGPGSNTSNRVTWSGYH-VIGPSDAANFTVGNFLLGGDWLPQTGVPYTGGL 612
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540LCM6 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 351/570 (61.58%), Postives = 428/570 (75.09%), Query Frame = 0
 
Query:    1 MAFKPFLSSSFTSI--LLIFLLPLLFSSVAKAAD----------ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVISQ-AQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQ-DGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            MA+   L SS   +    I L+PL F+S + AAD          IC STP PS C+S+  +NN   NVY YGR S   SLS++R FL+L   +L+R+S L+  A+ ALEDC +LA LN+D +L S + ++  + +L   + + V TL+S+ILTN QTC DG++ AA +WSLK+G+SIPL N TK YSVSL+LF  GWVPK          R    F NGR P K + +    +E +  RK+LQ +   D ++VS+IV VSQDGTG++STIN+A++ APN +  + GYF+I+VTAGVYEEYVS+ KN +Y+MM+GDGINQT+ITGNRSV DG+TTFNSAT AVV  GFVAVNITFRNTAG   HQAVA+R+GADLSTFYSCSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CNIYPRLP+SGQFNAITAQGRTD NQNTG SI NC IRAADDLASS+ STQTYLGRPWK YSRTVYMQS++DS+++ +GW EW+G FAL TLYYAEY+NTGP S+T+ RVTW GY   +N T+AA FTVTNF+ GDDWLP TGVPY+ GL
Sbjct:    1 MAYNSKLISSLHILASFFILLVPL-FASRSLAADNSSTPVSTGTICKSTPDPSFCKSVLPSNNTAENVYYYGRFSVRKSLSQSRKFLNLVDKYLKRSSTLSLTAVRALEDCLLLAGLNMDFLLNSFETVNNTSNTLPALKADDVQTLLSAILTNQQTCFDGIQSAASAWSLKNGLSIPLKNDTKFYSVSLALFTKGWVPKKKKQAAWRPTRMQRGFKNGRLPLKMSSKTRAVYESVSKRKMLQTEAADDQVLVSDIVTVSQDGTGNYSTINDAIAAAPNNSAPTDGYFLIFVTAGVYEEYVSVAKNKRYLMMVGDGINQTIITGNRSVVDGWTTFNSATLAVVAPGFVAVNITFRNTAGAIKHQAVAVRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLASSNSSTQTYLGRPWKEYSRTVYMQSYIDSVVDPVGWQEWNGDFALTTLYYAEYNNTGPGSNTTNRVTWPGYH-VINSTDAANFTVTNFLLGDDWLPQTGVPYTGGL 568
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5FUS0 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 351/569 (61.69%), Postives = 427/569 (75.04%), Query Frame = 0
 
Query:    1 MAFKPFLSSSFTSILLIF-LLPLLFSSVAKAAD----------ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVISQ-AQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQ-DGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            MA+   L SS       F LL  LF+S++ AAD          IC STP PS C+S+  +NN   NVY YGR S   SLS++R FL+L   +L+R+S L+  A+ ALEDC +LA LN+D +L S + ++  + +L   + + V TL+S+ILTN QTC DG++ AA +WSLK+G+SIPL N TK YSVSL+LF  GWVPK          R    F NGR P K + +    +E +  RK+LQ +   D ++VS+IV VSQDGTG++STI++A++ APN +  + GYF+IYVTAGVYEEYVS+ KN +Y+MM+GDGINQT+ITGNRSV DG+TTFNSAT AVV  GFVAVNITFRNTAG   HQAVA+R+GADLSTFYSCSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CNIYPRLP+SGQFNAITAQGRTD NQNTG SI NC IRAADDLASS+ STQTYLGRPWK YSRTVYMQS++DS+++ +GW EW+G FAL TLYYAEY+NTGP S+T+ RVTW GY   +N T+AA FTVTNF+ GDDWLP TGVPY+ GL
Sbjct:    1 MAYNSKLISSLHIFASFFILLAPLFASISLAADNSSTPVSTGTICKSTPDPSFCKSVLPSNNTAENVYYYGRFSVRKSLSQSRKFLNLVDKYLKRSSTLSLTAVRALEDCLLLAGLNMDFLLNSFETVNNNSNTLPALKADDVQTLLSAILTNQQTCFDGIQSAASAWSLKNGLSIPLKNDTKFYSVSLALFTKGWVPKKKKQAAWRPSRMQRGFKNGRLPLKMSSKTRAVYESVSKRKMLQTETADDLVLVSDIVTVSQDGTGNYSTISDAIAAAPNNSAPTDGYFLIYVTAGVYEEYVSVAKNKRYLMMVGDGINQTIITGNRSVVDGWTTFNSATLAVVAPGFVAVNITFRNTAGAIKHQAVAVRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLASSNSSTQTYLGRPWKEYSRTVYMQSYIDSVVDPVGWQEWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYH-VINSTDAANFTVTNFLLGDDWLPQTGVPYTGGL 568
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5GZS1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 356/572 (62.24%), Postives = 429/572 (75.00%), Query Frame = 0
 
Query:    1 MAFKPFLSSSFTSI--LLIFLLPLLFSSVAKAAD----------ICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVISQ-AQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAP-RTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQ-DGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            MA+   L SS   +   LI L+PL F+ ++ AAD          IC STP PS C+S LP+N N   NVY YGR S   SLS++R FL L   +LQR   L+  A+ ALEDCR+LA LN+D +L S + +++ +++LST + + V TL+S+ILTN QTC DG++    SWSLK+G+S+PL N TK YSVSL+LF  GWVPK     V++ P R    F NGR P K + +    +E +  RK+LQ +   D ++VS IV VS DGTG+FSTIN+A++ APN +  + GYF+IYVTAGVYEEYVS+ KN +++MM+GDGINQT+ITGNRSV DG+TTFNSATFAVV  GFVAVNITFRNTAG   HQAVA+RSGADLSTFYSCSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CNIYPRLP+SGQFNAITAQGRTD NQNTG SI NC IRAADDLASS+ ST+TYLGRPWK YSRTVYMQS++DSL+  +GW  W G FAL TLYYAEY+NTGP S+T+ RVTW GY   +N T+AA FTVTNF+ GDDWLP TGVPY+  L
Sbjct:    1 MAYNSKLISSLNLLASFLILLVPL-FAPLSSAADNSSTTVSAGTICKSTPDPSFCKSVLPHNRNP-ENVYYYGRFSVGKSLSQSRKFLKLIDKYLQRRPTLSLTAVRALEDCRLLAGLNMDFLLNSYETVNKTSKTLSTLKADDVQTLLSAILTNQQTCFDGIQSTVSSWSLKNGLSVPLKNDTKFYSVSLALFTKGWVPKKKKQ-VAWRPTRKQRGFKNGRLPLKMSSKMRAVYESVSKRKMLQTETADDEVLVSEIVTVSPDGTGNFSTINDAIAAAPNNSAPTDGYFLIYVTAGVYEEYVSVAKNKRHLMMVGDGINQTIITGNRSVVDGWTTFNSATFAVVAPGFVAVNITFRNTAGAIKHQAVAVRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLASSNSSTKTYLGRPWKEYSRTVYMQSYIDSLVEPVGWRAWDGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYH-VINSTDAANFTVTNFLLGDDWLPQTGVPYTGEL 568
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4EZC3 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 343/535 (64.11%), Postives = 408/535 (76.26%), Query Frame = 0
 
Query:   25 SSVAKAADICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQD-GGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            +S   +  +C STP P+ CRS LPN    TANVY Y R S   +LS++R FL L   +L+RNS LT  AI ALEDCR+LA LN+D +L S + + S  + LS+   E + T +S+ILTN QTC DGL+  A +WS+K G+++PL N TKLYSVSL+LF  GWVP+          R    F NGR P K + +    +E    RKLLQ     D ++VS+IV VSQDGTG+F+TIN+A++ APN ++ + GYF+IYVT GVYEEYVSI KN K++MMIGDGINQT+ITGNRSV DG+TTFNSATFAVV  GFVAVNITFRNTAG   HQAVA+R+GADLSTFYSCSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLP+SGQFNAITAQGRTD NQNTG SIQNC IRAAD+LASS+G+TQTYLGRPWK YSRTVY+Q+FMD LIN  GW  W+G FAL TLYYAEY+NTGP+S+T+ RVTW+GY   +N TE A FTV NF+ GDDWLP TGVPY+ GL
Sbjct:   31 TSPVSSVTVCKSTPDPTYCRSVLPNQ--TTANVYYYSRYSVRKALSQSRKFLMLVDKYLRRNSTLTTSAIRALEDCRLLAGLNMDFLLSSFQTVNSTGRILSSQRAEDIQTFLSAILTNEQTCSDGLQATASAWSIKKGLAVPLANDTKLYSVSLALFTKGWVPRKKKSTAWQPKRKQVGFKNGRLPLKMSSRTRAIYESASRRKLLQSTDNDDEVMVSDIVTVSQDGTGNFTTINDAIAAAPNNSVPADGYFLIYVTEGVYEEYVSIAKNKKHLMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVAPGFVAVNITFRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGISIQNCRIRAADELASSNGTTQTYLGRPWKEYSRTVYVQTFMDRLINPAGWMAWNGEFALSTLYYAEYNNTGPRSNTTNRVTWSGYH-VMNATEVANFTVANFLLGDDWLPQTGVPYAGGL 562
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G1B8 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 339/528 (64.20%), Postives = 405/528 (76.70%), Query Frame = 0
 
Query:   33 ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWV---PKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            +CA TPYPS CRS+  + N++ANVYDYGR S   SLS AR FLSL   +L+++S LTP A+AAL+DCR LA LN+D +L S + + S A ++   + + + TL+S+ILTN QTCLDGL+  A SWSLK+G+  PL N TKLYSVSL+LF  GWV    K M      +      F NG+ PFK + +    F+ +G RKLLQ GG   I+V N+V+V QDG+ +F+TI +A++ AP     S GYF+IYV  GVYEEYV+I KN KY+MMIGDGINQT+ITGNRS  DG TTFNS+TF+VVG GFVAV+ITFRNTAG   HQAVA+R+GAD STFYSCSFE YQDTLY HS RQFY ECDIYGTVDFIFGNAAA+ Q+CN+YPRLPL GQFNA+TAQGRTD NQNTG SI NC I+AADDLAS + + QTYLGRPWKLYSRT+YMQSFMDSLIN LGWHEW G FAL+T YYAE++N GP SDTSGRV+W+GY   +N T+AA FTVTNF+ GDDWLP  GVPYS GL
Sbjct:   32 VCAYTPYPSFCRSVLPDTNSSANVYDYGRLSVRKSLSSARKFLSLIDKYLRKSSSLTPTAVAALQDCRFLAALNMDFLLTSFQTVNSSANTMPVYKADDIQTLLSAILTNTQTCLDGLQATASSWSLKNGIYTPLANDTKLYSVSLALFTKGWVTKKKKHMGTGTVTSHENRLNFPNGKLPFKMSNRHQAIFDSVGKRKLLQTGGQ--ILVDNVVVVCQDGSKNFTTIGDAVAAAPVNADGSNGYFLIYVMEGVYEEYVAIAKNKKYLMMIGDGINQTIITGNRSFVDGSTTFNSSTFSVVGQGFVAVDITFRNTAGAIKHQAVAVRNGADFSTFYSCSFEAYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAMFQNCNMYPRLPLKGQFNAVTAQGRTDPNQNTGISIHNCTIKAADDLASGNFTVQTYLGRPWKLYSRTIYMQSFMDSLINPLGWHEWDGDFALNTSYYAEFNNRGPGSDTSGRVSWSGYHI-MNATDAANFTVTNFVVGDDWLPQVGVPYSGGL 556
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9WPD9 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 696.427 bits (1796), Expect = 0.000e+0
Identity = 347/529 (65.60%), Postives = 405/529 (76.56%), Query Frame = 0
 
Query:   30 AADICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
            A  +C S P PS C+S LPN   +T+NVYDYGR S   SLS+AR FL L   +L R S L+  AI ALEDCR+LA LN+D ++ S + + S +++L++ + + V T +S+ILTN QTCLDGL+  A +WS+K G+ +PL N TKLYSVSL+LF  GWVPK          R   AF NGR P K +G+  T FE +  RKLLQ    D I+VS IV V  +GTGDFS+IN+A++ APN T  S GYF+I++TAGVYEEYVSIPKN KY+MM+G GINQTVITGNRSV DG+TTFNSATFAVV   FVAVNITF+NTAG   HQAVA+RSGADLSTFYSCSFEGYQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPR P+SGQFNAITAQGRTD NQNTG SI NC I+AADDLASS+ + QTYLGRPWK YSRTVYMQSFMDSLIN  GW  WSG FAL TLYYAEY+NTGP SDT+ RVTW GY    N T+A  FTV++F+ GDDWLPL GVPY+ GL
Sbjct:   43 AGSLCKSFPDPSYCKSILPN---STSNVYDYGRFSVRKSLSQARKFLDLVDKYLARRSSLSTSAIRALEDCRLLAGLNMDFLISSFQTVNSTSKTLNSVKADDVQTWLSAILTNQQTCLDGLQATASAWSVKKGLLLPLSNDTKLYSVSLALFTKGWVPKNKKGFTWQPTRKQLAFRNGRLPLKMSGKTRTVFESVSRRKLLQTAEEDAIMVSGIVTVDLNGTGDFSSINDAVAAAPNNTNGSNGYFMIFITAGVYEEYVSIPKNKKYLMMVGAGINQTVITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFQNTAGAIKHQAVALRSGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRTPMSGQFNAITAQGRTDPNQNTGTSIHNCTIKAADDLASSNQTFQTYLGRPWKEYSRTVYMQSFMDSLINPAGWQIWSGDFALKTLYYAEYNNTGPGSDTTNRVTWDGYHIINNVTDAGNFTVSSFLLGDDWLPLIGVPYTGGL 568
[Close]
BLAST of DCAR_002852 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TBV3 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))

HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 341/567 (60.14%), Postives = 430/567 (75.84%), Query Frame = 0
 
Query:    3 FKPFLSSSFTSILLIFLLPLLFSSVAK---------AADICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVISQ-AQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAP--RTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQ-DGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
             K  L S+F  + ++FLL + FS  +           + +C STP+PS C ++  ++N++ANVYDYGR S   SLS AR FLSL + +L+++  LT  A+ ALEDC+ LAE N+D+++ S +++ Q +++LS  E + V TL+S+ILTN QTC+DGL+  A +W +++G+  PL N T+LYSVSL+LF  GWVPK  S P S  P  R      NG    K + +    +  +  R+LLQ D G + ++VS+IVIVSQDGTG+F+TIN+A++ APN T  ++GYF+IY+TAGVYEEYVSI KN KY+MMIGDGINQT+ITGN SV DG+TTFNS++FAVVG GFVAVNITFRNTAG   HQAVA+R+GADLSTFYSCSFE YQDTLY HS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLP+S QFNAITAQGRTD NQNTG SIQNC IRAADDLA+S+ + +TYLGRPWK YSRTVYMQSFMDSLIN  GW  WSG FAL+T YYAE++N+GP S+TS RVTW G+   +NET+AA FTV+ F+ GDDW+P TG PY++GL
Sbjct:    5 LKNLLFSAFPLLCILFLLSISFSQTSADTPPATPVPPSKLCKSTPFPSFCNTVLPSSNSSANVYDYGRFSVRKSLSAARKFLSLIEKYLRKSKQLTITAVRALEDCKFLAESNIDHLMSSFQIVDQTSKTLSVLEADDVQTLLSAILTNTQTCIDGLQATASAWRVRNGILSPLSNDTRLYSVSLALFTKGWVPKKKSRPSSSIPAGRKQLKMRNGSLNLKMSARNQAIYSTVNKRRLLQADSGDNQVLVSDIVIVSQDGTGNFTTINDAVAAAPNNTDGTSGYFLIYITAGVYEEYVSIGKNKKYLMMIGDGINQTIITGNHSVVDGWTTFNSSSFAVVGTGFVAVNITFRNTAGAIKHQAVAVRNGADLSTFYSCSFEAYQDTLYVHSLRQFYVECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSNQFNAITAQGRTDPNQNTGISIQNCTIRAADDLANSNITIRTYLGRPWKEYSRTVYMQSFMDSLINPAGWTIWSGDFALNTSYYAEFNNSGPGSNTSQRVTWPGFH-IINETDAANFTVSAFLLGDDWIPQTGAPYTAGL 570
Match NameStatsDescription
A0A5J5BMS7E-Value: 0.000e+0, PID: 65.73Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
F6HZ63E-Value: 0.000e+0, PID: 65.75Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A438F3N1E-Value: 0.000e+0, PID: 65.75Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A540LCM6E-Value: 0.000e+0, PID: 61.58Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5N5FUS0E-Value: 0.000e+0, PID: 61.69Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A5N5GZS1E-Value: 0.000e+0, PID: 62.24Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A2I4EZC3E-Value: 0.000e+0, PID: 64.11Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A7J0G1B8E-Value: 0.000e+0, PID: 64.20Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A2C9WPD9E-Value: 0.000e+0, PID: 65.60Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]
A0A6I9TBV3E-Value: 0.000e+0, PID: 60.14Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.