MKRWGETITVVVLAVTMVIESAMSDPQANKISKTGRESSGYEVRSFFTEI
ELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQV
FDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSS
GGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGA
AWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMS
EVVVMLVNDASPEPKQTN*
| Relationships |
|---|
| The polypeptide, DCAR_000702, derives from mRNA, DCAR_000702. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A2Z6NPU8 ((Uncharacterized protein {ECO:0000313|EMBL:GAU44113.1}))
HSP 1 Score: 152.91 bits (385), Expect = 4.856e-41
Identity = 96/261 (36.78%), Postives = 126/261 (48.28%), Query Frame = 0
Query: 41 YEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTA-------------------------------------IIAGGVGA--------AWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
YE FF + L +S +C KT F A Q+L DL ATPKI FF A K QV A +YA+AQC TV++ C CL G++NIQ C + G + GCF+RYS FF+DN +I P+L++GSSSKK A +I G G AWK Y H +L+D+T++ S+Y+ E KK+I IAL CTQ+ S RPTMSE+VV+L
Sbjct: 128 YESNGFFDQTTLPGNSVLCG-TKTANGATTFNAAAQQILLDLQTATPKIHGFFAATKTQV--------AGNAIYAIAQCAETVTESGCLDCLTVGFTNIQGCFPNTDGEA-----FDAGCFMRYSEKSFFADNQTIDITPFLKQGSSSKKGAIIGGVVGGVVLVLILLALFVWFRLKKKPKRHPRAVKKLILGHSGKMDEQFESEAWKLYEVDRHLELVDKTLNPSDYDAEEVKKIIAIALLCTQATASTRPTMSEIVVLL 374
HSP 2 Score: 46.9802 bits (110), Expect = 1.842e-3
Identity = 27/70 (38.57%), Postives = 33/70 (47.14%), Query Frame = 0
Query: 101 FDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFF 170
F SAK + VYA+ QC +S DC C + I+ C S GS+ G GCFLRY FF
Sbjct: 69 FATAQSAKGANPVYALFQCRNYLSNSDCSACFAVAAAQIRNC---SAGSN-GARVIYDGCFLRYESNGFF 134
Match: A0A103Y3T3 ((Gnk2-homologous domain-containing protein {ECO:0000313|EMBL:KVI01990.1}))
HSP 1 Score: 122.479 bits (306), Expect = 8.151e-30
Identity = 86/235 (36.60%), Postives = 120/235 (51.06%), Query Frame = 0
Query: 41 YEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDN-------DITNI-MPYLQKGSSSKKTAIIAGGVG------AAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDAS 261
YE SF+ E + +C N+T Q F LL DL+ ATP+I F+ AA V G + K VYA+AQC+ V++ C CL Y+NI+ C + G + GCF+R P ++ + D + + L+ S + T + G AW Y H L+DET+D S+Y ++ KK+IEIAL CTQSPVS+RPTMSE VVML++D S
Sbjct: 125 YESNSFYDETTNDGNVGLCG-NRTSSRQGVFETAVDGLLSDLSIATPRISGFYAAATAPVV-GTNTTK----VYAIAQCVERVTRNGCKDCLHVAYANIKICPT----VVTDGRAIDSGCFMRGYTAPEYAIHGQLSEKVDTYSFGIVVLEIVSGKRCTDVRNESAGEQYLLEHAWNLYETRMHLKLVDETLDPSKYREDDIKKVIEIALMCTQSPVSVRPTMSE-VVMLLSDRS 348
HSP 2 Score: 41.2022 bits (95), Expect = 1.291e-1
Identity = 23/86 (26.74%), Postives = 35/86 (40.70%), Query Frame = 0
Query: 93 FGAAKRQV------FDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSD 172
FG +RQ+ F + S VY + QC +S DC C +I++C + G GC+LRY F+ +
Sbjct: 53 FGNVRRQLSNNKTYFVTAEQTRNSEPVYVLCQCRKYMSTRDCVACFDFAVRSIRSC-----APAKGARRVLDGCYLRYESNSFYDE 133
Match: A0A067LER0 ((Uncharacterized protein {ECO:0000313|EMBL:KDP46966.1}))
HSP 1 Score: 123.635 bits (309), Expect = 2.269e-29
Identity = 65/159 (40.88%), Postives = 90/159 (56.60%), Query Frame = 0
Query: 41 YEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVG 199
YE F+ E + E C +N+T AAF A LL+DL ATP+I FF A+KR + ++ +VY +AQC+ + C C+ Y+NIQ CL ++ G + GCF+RYS PFF+DN N+ P+L+ GSSSKKTA+IAG G
Sbjct: 109 YERNDFYGETTRDANREYC-ENQTTSLTAAFQTTADSLLRDLQIATPRINGFFTASKRDIV-----GVSNASVYGIAQCVQIIDMSGCLACMQVAYANIQRCLPKTDGRA-----VDSGCFMRYSNKPFFADNQTINLEPFLKTGSSSKKTALIAGVAG 256
HSP 2 Score: 81.6481 bits (200), Expect = 7.232e-15
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 0
Query: 201 AWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 265
AWK Y NGTH +L+DE++ EY E KK+IEIAL CTQ+ +LRPTMSEVVV+L + S E +
Sbjct: 524 AWKLYENGTHLELVDESLGPDEYEAEEVKKIIEIALMCTQASHALRPTMSEVVVLLKSTGSLEHR 588
HSP 3 Score: 37.3502 bits (85), Expect = 3.364e+0
Identity = 17/60 (28.33%), Postives = 26/60 (43.33%), Query Frame = 0
Query: 113 VYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSD 172
V+A+ QC +S +C C +++C GG GCFLRY F+ +
Sbjct: 63 VFAMVQCRDYMSTAECIACFRAASIEVRSC-----SPGNGGRVVYDGCFLRYERNDFYGE 117
Match: A0A1S3VJC3 ((cold-responsive protein kinase 1-like {ECO:0000313|RefSeq:XP_014518199.2}))
HSP 1 Score: 123.25 bits (308), Expect = 3.173e-29
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 0
Query: 41 YEVRSFFTEI-ELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGA---------AWKSY 205
YE + FF + ELG +C N + F LV Q++ D+ ATPK ++F+ A K QV +G +YAVAQC+ T ++ C C+ GY+N+Q+CL + G + GCF+RYS TPFF+DN +I PYL+KG SS+K IIA VGA AW+ +
Sbjct: 125 YESQMFFDQTNELGKGV-LCGKNTS--NATGFGLVGRQVIADIQTATPKTRDFYAATKTQVANG-------TAIYAVAQCVETATEDKCLSCMQAGYNNLQSCLPNTEGRA-----YDAGCFMRYSTTPFFADNQTIDIAPYLKKGDSSRKWIIIAASVGAVVALLCVLFAWRWF 284
HSP 2 Score: 73.559 bits (179), Expect = 3.819e-12
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 202 WKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
WK Y G H +L+D+ ID ++Y+ E+ KK+IEIAL CTQ+ + RPTMSEVVV+L
Sbjct: 537 WKLYERGMHLELVDKAIDPNDYDAEDVKKIIEIALLCTQASAATRPTMSEVVVLL 591
HSP 3 Score: 41.2022 bits (95), Expect = 1.505e-1
Identity = 24/84 (28.57%), Postives = 33/84 (39.29%), Query Frame = 0
Query: 93 FGAAKRQV------FDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFF 170
F +R++ F A V YA+ QC +S+ DC C + I+ C + G GCFLRY FF
Sbjct: 53 FSNLRREISNNSKHFGTTQQAIGDVLTYAMFQCRNYLSKNDCLSCFNTASTQIRNC-----SQANGARVIYDGCFLRYESQMFF 131
Match: A0A0S3S5N9 ((Uncharacterized protein {ECO:0000313|EMBL:BAT88156.1}))
HSP 1 Score: 123.25 bits (308), Expect = 3.298e-29
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 0
Query: 41 YEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVG 199
YE FF + + +C N + A F LV Q++ D+ ATPK ++F+ A K QV +G +YAVAQC+ T ++ C C+ GY+N+Q+CL + G + GCF+RYS TPFF+DN +I PYL+KG SS+K IIA VG
Sbjct: 128 YESEMFFDQTDELGKGVLCGKNTS--NAAGFGLVGQQVIADIQTATPKTRDFYAATKTQVANG-------TAIYAVAQCVETATEDKCLSCMQAGYNNLQSCLPNTEGRA-----YDAGCFMRYSTTPFFADNQTIDIAPYLKKGDSSRKWIIIAASVG 272
HSP 2 Score: 73.559 bits (179), Expect = 3.584e-12
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 202 WKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
WK Y G H +L+D+ ID ++Y+ E+ KK+IEIAL CTQ+ + RPTMSEVVV+L
Sbjct: 540 WKLYERGMHLELVDKAIDPNDYDAEDVKKIIEIALLCTQASAATRPTMSEVVVLL 594
HSP 3 Score: 45.4394 bits (106), Expect = 7.597e-3
Identity = 23/74 (31.08%), Postives = 30/74 (40.54%), Query Frame = 0
Query: 101 FDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDND 174
F A+ V YA+ QC +S+ DC C + I+ C + G GCFLRY FF D
Sbjct: 70 FGTTQEAREDVLTYAMFQCRNYLSKNDCLSCFNNASTQIRNC-----SQANGARVIYDGCFLRYESEMFFDQTD 138
Match: A0A0L9VCJ6 ((Uncharacterized protein {ECO:0000313|EMBL:KOM52786.1}))
HSP 1 Score: 123.25 bits (308), Expect = 3.531e-29
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 0
Query: 41 YEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVG 199
YE FF + + +C N + A F LV Q++ D+ ATPK ++F+ A K QV +G +YAVAQC+ T ++ C C+ GY+N+Q+CL + G + GCF+RYS TPFF+DN +I PYL+KG SS+K IIA VG
Sbjct: 149 YESEMFFDQTDELGKGVLCGKNTS--NAAGFGLVGQQVIADIQTATPKTRDFYAATKTQVANG-------TAIYAVAQCVETATEDKCLSCMQAGYNNLQSCLPNTEGRA-----YDAGCFMRYSTTPFFADNQTIDIAPYLKKGDSSRKWIIIAASVG 293
HSP 2 Score: 73.559 bits (179), Expect = 4.020e-12
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 202 WKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
WK Y G H +L+D+ ID ++Y+ E+ KK+IEIAL CTQ+ + RPTMSEVVV+L
Sbjct: 561 WKLYERGMHLELVDKAIDPNDYDAEDVKKIIEIALLCTQASAATRPTMSEVVVLL 615
HSP 3 Score: 36.1946 bits (82), Expect = 7.815e+0
Identity = 23/79 (29.11%), Postives = 31/79 (39.24%), Query Frame = 0
Query: 107 AKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDN----DITNIMPY 181
A+ V YA+ QC +S+ DC C + I+ C + G GCFL S S N N+M Y
Sbjct: 76 AREDVLTYAMFQCRNYLSKNDCLSCFNNASTQIRNC-----SQANGARVIYDGCFLSVSYVEDLSINFNVGYYENVMRY 149
Match: A0A371GYB0 ((Cysteine-rich receptor-like protein kinase 2 {ECO:0000313|EMBL:RDX95534.1}) (Fragment))
HSP 1 Score: 122.094 bits (305), Expect = 1.032e-28
Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query: 41 YEVRSFFTEI-ELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGA--------AWK 203
YE F+ + ELG S +C + T+ + F Q L DL ATPK K+F+ A K QV G +YA+AQC+ T ++ +C C+ GY+N+Q+CL + G S GC++RYS TPFF+DN +I PY + G SSKK AII GGVGA AW+
Sbjct: 126 YESERFYNQTNELG-SGVLCGN--TISSVTGFGEAGQQALMDLQIATPKTKDFYAATKTQVVGGS-------AIYAIAQCVETATETNCLNCMQVGYNNLQSCLPYTEGRS-----YDAGCYMRYSTTPFFADNQTIDITPYFKHGDSSKKWAIIGGGVGAVVLILALFAWR 282
HSP 2 Score: 114.39 bits (285), Expect = 5.341e-26
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 0
Query: 71 FTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVG 199
F V Q L DL ATPKIK F+ A K QV G +YA+AQC+ T S+ +C CL GY+N+Q+CL + G + GCF+RYS PFF+DN +I PYL+ G SSKK II G +G
Sbjct: 718 FKAVGQQALMDLQIATPKIKGFYAATKTQVVAGS-------AIYAIAQCVETASEPNCLNCLQLGYNNLQSCLPNTEGRA-----YDAGCFMRYSTKPFFADNQTIDIAPYLKHGDSSKKWPIIGGVIG 834
HSP 3 Score: 72.7886 bits (177), Expect = 7.814e-12
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0
Query: 202 WKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
WK Y G H +L+D+ ID ++Y+ E KK+IEIAL CTQ+ + RPTMSEVVV+L
Sbjct: 1084 WKLYERGMHLELVDKAIDPNDYDAEEVKKIIEIALLCTQASAATRPTMSEVVVLL 1138
HSP 4 Score: 70.8626 bits (172), Expect = 3.067e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0
Query: 201 AWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
+WK + G H +L+D+ ID +EY E KK+IEIAL CTQ S RPTMSEVV +L
Sbjct: 535 SWKLHERGLHMELVDKAIDPNEYEAEEVKKIIEIALSCTQPSASTRPTMSEVVALL 590
HSP 5 Score: 41.2022 bits (95), Expect = 1.834e-1
Identity = 21/68 (30.88%), Postives = 29/68 (42.65%), Query Frame = 0
Query: 107 AKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDND 174
A+ YA+ QC S+ DC CL + IQ C + G GCFLRY F++ +
Sbjct: 74 ARGDALTYAMFQCRNYQSKNDCLVCLNTAITQIQNC-----SKANGARVIYDGCFLRYESERFYNQTN 136
HSP 6 Score: 37.7354 bits (86), Expect = 2.496e+0
Identity = 22/65 (33.85%), Postives = 29/65 (44.62%), Query Frame = 0
Query: 107 AKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSA-SGGCFLRYSVTPFF 170
A+ V YA+ QC +S DC C I+ C S+G G+ GCFLRY F+
Sbjct: 638 ARGEVLTYAMFQCRNYLSIKDCLACFDVASIQIRNC------STGNGARVIYDGCFLRYESERFY 696
Match: A0A2N9GWR1 ((Uncharacterized protein {ECO:0000313|EMBL:SPD06787.1}))
HSP 1 Score: 119.398 bits (298), Expect = 1.325e-28
Identity = 71/154 (46.10%), Postives = 87/154 (56.49%), Query Frame = 0
Query: 41 YEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAII 194
YE SF+ + L S +C N+T AF+ +LL DL ATPKI FF A+K++V GG +VTVYAVAQC+ T S+ C CL SN Q CL S G + GCFLRYS TPFF+DN +I +L G SSKK AII
Sbjct: 124 YESASFYDQTTLPGSEGICG-NQTTSQPTAFSTTGEELLNDLQTATPKINGFFAASKKEVVVGG-----NVTVYAVAQCVETASESGCQDCLKIASSNAQRCLP-----SADGRAYDAGCFLRYSDTPFFADNQTIDINQFLGNGGSSKKKAII 266
HSP 2 Score: 43.5134 bits (101), Expect = 3.021e-2
Identity = 39/165 (23.64%), Postives = 65/165 (39.39%), Query Frame = 0
Query: 11 VVLAVTMV-----IESAMSDPQANKISKTGRESSGYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFF 170
+VL VT + + ++DPQ N ++ + + +V +F+T + A F+ + QL + N + A +QV P+ YA+ QC +S+ DC C S I+ C ++ G GCFLRY F+
Sbjct: 4 MVLRVTFIWWLWGLRLGVADPQINLLNSGCSQYNVSDVSNFYTNL-----------------NATFSDLRTQLNNN---------NKYFATAQQVIGSEPA-------YAMVQCRNYLSKSDCIACFTTAVSQIRNC-----SAANGARVIYDGCFLRYESASFY 130
Match: A0A445I578 ((Cysteine-rich receptor-like protein kinase 2 {ECO:0000313|EMBL:RZB81152.1}))
HSP 1 Score: 121.324 bits (303), Expect = 1.712e-28
Identity = 71/155 (45.81%), Postives = 89/155 (57.42%), Query Frame = 0
Query: 41 YEVRSFFTEI-ELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAII 194
YE F+ + E+G V NK+ A F V Q L DL ATPKIK F+ A K QV A S +YA+AQC+ T SQ C C+ GY+N+Q+CL S GS+ GCF+R+S TPFF+DN NI PYL++G SSKK AII
Sbjct: 131 YESERFYQQTNEIGGG--VTCGNKSTNA-TGFRAVGQQALLDLQKATPKIKGFYAATKTQV------AGGSANIYAIAQCVETASQQKCLDCMQVGYNNLQSCLP-----STDGSAYDAGCFMRFSTTPFFADNQTINIRPYLKEGGSSKKWAII 271
HSP 2 Score: 71.2478 bits (173), Expect = 2.164e-11
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0
Query: 201 AWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
AWK Y G +L+D+ ID +EY+ E KK+IEIAL CTQ+ + RPTMSE+VV+L
Sbjct: 542 AWKLYERGMQLELVDKDIDPNEYDAEEVKKIIEIALLCTQASAATRPTMSELVVLL 597
Match: I1LM52 ((Uncharacterized protein {ECO:0000313|EMBL:KRH30805.1, ECO:0000313|EnsemblPlants:KRH30805}))
HSP 1 Score: 121.324 bits (303), Expect = 1.712e-28
Identity = 71/155 (45.81%), Postives = 89/155 (57.42%), Query Frame = 0
Query: 41 YEVRSFFTEI-ELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAII 194
YE F+ + E+G V NK+ A F V Q L DL ATPKIK F+ A K QV A S +YA+AQC+ T SQ C C+ GY+N+Q+CL S GS+ GCF+R+S TPFF+DN NI PYL++G SSKK AII
Sbjct: 131 YESERFYQQTNEIGGG--VTCGNKSTNA-TGFRAVGQQALLDLQKATPKIKGFYAATKTQV------AGGSANIYAIAQCVETASQQKCLDCMQVGYNNLQSCLP-----STDGSAYDAGCFMRFSTTPFFADNQTINIRPYLKEGGSSKKWAII 271
HSP 2 Score: 71.2478 bits (173), Expect = 2.164e-11
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0
Query: 201 AWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 256
AWK Y G +L+D+ ID +EY+ E KK+IEIAL CTQ+ + RPTMSE+VV+L
Sbjct: 542 AWKLYERGMQLELVDKDIDPNEYDAEEVKKIIEIALLCTQASAATRPTMSELVVLL 597
| Match Name | Stats | Description |
|---|---|---|
| A0A2Z6NPU8 | E-Value: 4.856e-41, PID: 36.78 | (Uncharacterized protein {ECO:0000313|EMBL:GAU4411... [more] |
| A0A103Y3T3 | E-Value: 8.151e-30, PID: 36.60 | (Gnk2-homologous domain-containing protein {ECO:00... [more] |
| A0A067LER0 | E-Value: 2.269e-29, PID: 40.88 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4696... [more] |
| A0A1S3VJC3 | E-Value: 3.173e-29, PID: 39.43 | (cold-responsive protein kinase 1-like {ECO:000031... [more] |
| A0A0S3S5N9 | E-Value: 3.298e-29, PID: 40.25 | (Uncharacterized protein {ECO:0000313|EMBL:BAT8815... [more] |
| A0A0L9VCJ6 | E-Value: 3.531e-29, PID: 40.25 | (Uncharacterized protein {ECO:0000313|EMBL:KOM5278... [more] |
| A0A371GYB0 | E-Value: 1.032e-28, PID: 40.70 | (Cysteine-rich receptor-like protein kinase 2 {ECO... [more] |
| A0A2N9GWR1 | E-Value: 1.325e-28, PID: 46.10 | (Uncharacterized protein {ECO:0000313|EMBL:SPD0678... [more] |
| A0A445I578 | E-Value: 1.712e-28, PID: 45.81 | (Cysteine-rich receptor-like protein kinase 2 {ECO... [more] |
| I1LM52 | E-Value: 1.712e-28, PID: 45.81 | (Uncharacterized protein {ECO:0000313|EMBL:KRH3080... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |