Resource Type:
Polypeptide
Name:
DCAR_000538
Identifier:
DCAR_000538.mRNA-protein
Sequence:
MAVPKLLPFCIIIFTLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDN
ILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVH
VASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLS
DIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDK
LEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEK
LNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGA
IAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGE
GKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGGTIVLRLLR
DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITHEILLGKKPGKA
RSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMG
CCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRSEIEEHLYYAVLM
MDIELLPEEPISEFSFHCPSQA*
Sequence Length:
573
Sequence Checksum:
11bff67dbff8f8523a1a1e006a1836fa
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_000538, derives from mRNA, DCAR_000538. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BHT8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 305/489 (62.37%), Postives = 362/489 (74.03%), Query Frame = 0
HSP 2 Score: 159.458 bits (402), Expect = 4.559e-39
Identity = 76/93 (81.72%), Postives = 87/93 (93.55%), Query Frame = 0
Match: A0A6N2BHT8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 305/489 (62.37%), Postives = 362/489 (74.03%), Query Frame = 0
Query: 6 LLPFCIIIFTLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
LL F I+ F + T + S+ + +LLL IKPSLQGN+DN+LL+SWN SVPLCQW+GLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS LKSLYLGVN L G IPLELGYSSSLSDI+L +N L G++PTSIWNLC++++SF++H N LSG++P PALP+ATC L+ LDFG N FSGD P F+TRF LKELDLG N FSG +PE + L LEKLNLS+NNF+GV+PNFG SKFG DVFEGNNP LCG PL C+GSSG+S GAIAGIVIGLMA +VV+ASLLIGY QGKK+++ D+EE E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALGIARGLAHLH LETPITH
Sbjct: 5 LLSFYIVFFIVLT-------TTSAASDVQLLLQNIKPSLQGNTDNLLLSSWNISVPLCQWRGLKWVFTNGTSLLCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLKSLYLGVNGLHGSIPLELGYSSSLSDIELSDNSLTGTLPTSIWNLCEKMVSFKIHGNSLSGSLPNPALPDATCKNLQFLDFGQNRFSGDFPVFITRFNGLKELDLGDNNFSGPVPETLAALKLEKLNLSHNNFSGVLPNFGESKFGVDVFEGNNPTLCGHPLGPCSGSSGMSPGAIAGIVIGLMAALVVVASLLIGYFQGKKKRHADEEEEEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGGTCLTVIRQLGRVRHENVIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGIARGLAHLH-GLETPITH 485
HSP 2 Score: 159.458 bits (402), Expect = 4.559e-39
Identity = 76/93 (81.72%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETTMEVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 562 PGKNGRNGDNVDLPALVKVAVLEETTMEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 654
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BAK8 ((Serine/threonine-protein kinase PBS1 {ECO:0000313|EnsemblPlants:PGSC0003DMT400040874}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 304/489 (62.17%), Postives = 360/489 (73.62%), Query Frame = 0
HSP 2 Score: 159.458 bits (402), Expect = 4.546e-39
Identity = 76/93 (81.72%), Postives = 87/93 (93.55%), Query Frame = 0
Match: M1BAK8 ((Serine/threonine-protein kinase PBS1 {ECO:0000313|EnsemblPlants:PGSC0003DMT400040874}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 304/489 (62.17%), Postives = 360/489 (73.62%), Query Frame = 0
Query: 6 LLPFCIIIFTLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
LL F I+ F T + S+ + +LLL IKPSLQGN+DN+LL+SWN SVPLCQW+GLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS L+SLYLGVN L G IPLELGYSSSLSDI+L N L G++PTSIWNLC++++SF++H N LSG++P PALP+ATC L+ LDFG N FSGD P F+TRF LKELDLG N FSG +PE + L LEKLNLS+NNF+GV+PNFG SKFG DVFEGNNP LCG PL C+GSSG+S GAIAGIVIGLMA +VV+ASLLIGY QGKK+++ D+EE E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALGIARGLAHLH LETPITH
Sbjct: 8 LLSFYIVFFIAFT-------TTSAASDVQLLLQNIKPSLQGNTDNLLLSSWNISVPLCQWRGLKWVFTNGTSLLCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLQSLYLGVNGLHGSIPLELGYSSSLSDIELSGNSLTGTLPTSIWNLCEKMVSFKIHGNSLSGSLPNPALPDATCKNLQFLDFGQNRFSGDFPLFITRFNGLKELDLGDNNFSGPVPETLAALKLEKLNLSHNNFSGVLPNFGESKFGVDVFEGNNPTLCGHPLGPCSGSSGMSPGAIAGIVIGLMAALVVVASLLIGYFQGKKKRHADEEEEEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGGTCLTVIRQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGIARGLAHLH-GLETPITH 488
HSP 2 Score: 159.458 bits (402), Expect = 4.546e-39
Identity = 76/93 (81.72%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETTMEVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 565 PGKNGRNGDNVDLPALVKVAVLEETTMEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 657
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: S4WHD2 ((Ovary receptor kinase 7 {ECO:0000313|EMBL:AGO98726.1}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 304/489 (62.17%), Postives = 360/489 (73.62%), Query Frame = 0
HSP 2 Score: 159.458 bits (402), Expect = 4.546e-39
Identity = 76/93 (81.72%), Postives = 87/93 (93.55%), Query Frame = 0
Match: S4WHD2 ((Ovary receptor kinase 7 {ECO:0000313|EMBL:AGO98726.1}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 304/489 (62.17%), Postives = 360/489 (73.62%), Query Frame = 0
Query: 6 LLPFCIIIFTLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
LL F I+ F T + S+ + +LLL IKPSLQGN+DN+LL+SWN SVPLCQW+GLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS L+SLYLGVN L G IPLELGYSSSLSDI+L N L G++PTSIWNLC++++SF++H N LSG++P PALP+ATC L+ LDFG N FSGD P F+TRF LKELDLG N FSG +PE + L LEKLNLS+NNF+GV+PNFG SKFG DVFEGNNP LCG PL C+GSSG+S GAIAGIVIGLMA +VV+ASLLIGY QGKK+++ D+EE E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALGIARGLAHLH LETPITH
Sbjct: 8 LLSFYIVFFIAFT-------TTSAASDVQLLLQNIKPSLQGNTDNLLLSSWNISVPLCQWRGLKWVFTNGTSLLCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLQSLYLGVNGLHGSIPLELGYSSSLSDIELSGNSLTGTLPTSIWNLCEKMVSFKIHGNSLSGSLPNPALPDATCKNLQFLDFGQNRFSGDFPLFITRFNGLKELDLGDNNFSGPVPETLAALKLEKLNLSHNNFSGVLPNFGESKFGVDVFEGNNPTLCGHPLGPCSGSSGMSPGAIAGIVIGLMAALVVVASLLIGYFQGKKKRHADEEEEEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGGTCLTVIRQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGIARGLAHLH-GLETPITH 488
HSP 2 Score: 159.458 bits (402), Expect = 4.546e-39
Identity = 76/93 (81.72%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETTMEVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 565 PGKNGRNGDNVDLPALVKVAVLEETTMEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 657
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7I2W3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 301/489 (61.55%), Postives = 359/489 (73.42%), Query Frame = 0
HSP 2 Score: 159.073 bits (401), Expect = 8.315e-39
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0
Match: A0A3Q7I2W3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 301/489 (61.55%), Postives = 359/489 (73.42%), Query Frame = 0
Query: 6 LLPFCIIIFTLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
LL F I+ F + T + S+ + +LLL IKPSLQGN+DN+LL+SWN SVPLCQW+GLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS LKSLYLGVN L G IPLELGYSSSLSDI+L +N L G++PTSIWNLC++++SF++H N LSG++P PALP+ATC L+ LDFG N FSGD P F+TRF LKELDLG N FSG +PE + L LEKLNLS+NNF+GV+PNFG SKFG DVFEGNNP LCG PL C+GSSG+S GAIAGIVIGLMA +VV+ASLLIGY QGKK+++ D+EE +++ G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALGIARGLAHLH LETPITH
Sbjct: 43 LLSFYIVFFIVLT-------TTSAASDVQLLLQNIKPSLQGNTDNLLLSSWNISVPLCQWRGLKWVFTNGTSLLCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLKSLYLGVNGLHGSIPLELGYSSSLSDIELSDNSLTGTLPTSIWNLCEKMVSFKIHGNSLSGSLPNPALPDATCKNLQFLDFGQNRFSGDFPVFITRFNGLKELDLGDNNFSGPVPETLAALKLEKLNLSHNNFSGVLPNFGESKFGVDVFEGNNPTLCGHPLGPCSGSSGMSPGAIAGIVIGLMAALVVVASLLIGYFQGKKKRHADEEEEFEEVEDEEA-GCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGGTCLTVIRQLGRVRHENVIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGIARGLAHLH-GLETPITH 522
HSP 2 Score: 159.073 bits (401), Expect = 8.315e-39
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G DLP+LVK AVLEETTMEVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 599 PGKNGRNGDNADLPALVKVAVLEETTMEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 691
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2ZXN6 ((putative kinase-like protein TMKL1 isoform X4 {ECO:0000313|RefSeq:XP_016565537.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 301/495 (60.81%), Postives = 364/495 (73.54%), Query Frame = 0
HSP 2 Score: 157.918 bits (398), Expect = 1.398e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Match: A0A2G2ZXN6 ((putative kinase-like protein TMKL1 isoform X4 {ECO:0000313|RefSeq:XP_016565537.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 301/495 (60.81%), Postives = 364/495 (73.54%), Query Frame = 0
Query: 1 MAVPKLLPFCIIIF-TLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
MA+ + L +I F T+ P I S + + +LLL IKPSLQG+++N+LL+SWNTSVPLCQWKGLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS L+SLYLGVN L G IPLELGYSSSLSDI+L N L+G++PTSIWNLC++L+S ++H N LSG++P PALP+ATC L+ LDFG N+FSG+ P F+T+F LKELDLG N FSG +PE + L LEKLNLS+NNF+G++PNFG SKFG DVFEGNNP LCG PL C+GSSGLS GAIAGIVIGLM +VV+ASLLIGY QGK+RK+ D+E E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALG+ARGLAHLH LETP+TH
Sbjct: 1 MALQRFLSLYVIFFIAFTSCPQVFISSSAVASDVQLLLQNIKPSLQGSTNNLLLSSWNTSVPLCQWKGLKWVFTNGTSLVCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLQSLYLGVNALHGTIPLELGYSSSLSDIELSGNTLSGTLPTSIWNLCEKLVSLKIHGNSLSGSLPNPALPDATCKSLQYLDFGQNIFSGNFPVFITKFNGLKELDLGCNNFSGPVPETLAALKLEKLNLSHNNFSGMLPNFGESKFGMDVFEGNNPTLCGHPLGPCSGSSGLSPGAIAGIVIGLMTALVVVASLLIGYFQGKRRKHADEEVNEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGSTCLTVIRQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGMARGLAHLH-GLETPVTH 494
HSP 2 Score: 157.918 bits (398), Expect = 1.398e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETT+EVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 571 PGKNGRNGDNVDLPALVKVAVLEETTLEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 663
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8G2A9 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:PHT86726.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 301/495 (60.81%), Postives = 364/495 (73.54%), Query Frame = 0
HSP 2 Score: 157.918 bits (398), Expect = 1.398e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Match: A0A1U8G2A9 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:PHT86726.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 301/495 (60.81%), Postives = 364/495 (73.54%), Query Frame = 0
Query: 1 MAVPKLLPFCIIIF-TLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
MA+ + L +I F T+ P I S + + +LLL IKPSLQG+++N+LL+SWNTSVPLCQWKGLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS L+SLYLGVN L G IPLELGYSSSLSDI+L N L+G++PTSIWNLC++L+S ++H N LSG++P PALP+ATC L+ LDFG N+FSG+ P F+T+F LKELDLG N FSG +PE + L LEKLNLS+NNF+G++PNFG SKFG DVFEGNNP LCG PL C+GSSGLS GAIAGIVIGLM +VV+ASLLIGY QGK+RK+ D+E E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALG+ARGLAHLH LETP+TH
Sbjct: 1 MALQRFLSLYVIFFIAFTSCPQVFISSSAVASDVQLLLQNIKPSLQGSTNNLLLSSWNTSVPLCQWKGLKWVFTNGTSLVCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLQSLYLGVNALHGTIPLELGYSSSLSDIELSGNTLSGTLPTSIWNLCEKLVSLKIHGNSLSGSLPNPALPDATCKSLQYLDFGQNIFSGNFPVFITKFNGLKELDLGCNNFSGPVPETLAALKLEKLNLSHNNFSGMLPNFGESKFGMDVFEGNNPTLCGHPLGPCSGSSGLSPGAIAGIVIGLMTALVVVASLLIGYFQGKRRKHADEEVNEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGSTCLTVIRQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGMARGLAHLH-GLETPVTH 494
HSP 2 Score: 157.918 bits (398), Expect = 1.398e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETT+EVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 571 PGKNGRNGDNVDLPALVKVAVLEETTLEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 663
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2VYZ7 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:PHT38202.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 300/495 (60.61%), Postives = 365/495 (73.74%), Query Frame = 0
HSP 2 Score: 157.918 bits (398), Expect = 1.538e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Match: A0A2G2VYZ7 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:PHT38202.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 300/495 (60.61%), Postives = 365/495 (73.74%), Query Frame = 0
Query: 1 MAVPKLLPFCIIIF-TLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
MA+ + L +I F T+ P I S + + +LLL IKPSLQG+++N+LL+SWNTSVPLCQWKGLKWVFTNG++L CSDL+SPQWT+L+L+++P +H+ SLQLPSA L G +PRELGELS L+SLYLGVN L G IPLELGYSSSLSDI+L N L+G++PTSIWNLC++L+S ++H N LSG++P PALP+ATC L+ LDFG N+FSG+ P F+T+F+ LKELDLG N FSG +PE + L LEKLNLS+NNF+G++PNFG SKFG DVFEGNNP LCG PL C+GSSGLS GAIAGIVIGLM +VV+ASLLIGY QGK+RK+ D+E E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALG+ARGLAHLH LETP+TH
Sbjct: 1 MALQRFLSLYVIFFIAFTSCPQVFISSSAVASDVQLLLQNIKPSLQGSTNNLLLSSWNTSVPLCQWKGLKWVFTNGTSLLCSDLSSPQWTSLALYRNPSLHLVSLQLPSANLSGTLPRELGELSTLQSLYLGVNALHGTIPLELGYSSSLSDIELSGNTLSGTLPTSIWNLCEKLVSLKIHGNSLSGSLPNPALPDATCKSLQYLDFGQNIFSGNFPVFITKFSGLKELDLGCNNFSGPVPETLAALKLEKLNLSHNNFSGMLPNFGESKFGMDVFEGNNPTLCGHPLGPCSGSSGLSPGAIAGIVIGLMTALVVVASLLIGYFQGKRRKHADEEVNEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGSTCLTVIRQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGMARGLAHLH-GLETPVTH 494
HSP 2 Score: 157.918 bits (398), Expect = 1.538e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETT+EVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 571 PGKNGRNGDNVDLPALVKVAVLEETTLEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 663
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CVD7 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:PHU22680.1}))
HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0
Identity = 300/495 (60.61%), Postives = 363/495 (73.33%), Query Frame = 0
HSP 2 Score: 157.918 bits (398), Expect = 1.398e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Match: A0A2G3CVD7 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:PHU22680.1}))
HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0
Identity = 300/495 (60.61%), Postives = 363/495 (73.33%), Query Frame = 0
Query: 1 MAVPKLLPFCIIIF-TLTTNPVFPILSLSSTLETELLLTKIKPSLQGNSDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDDENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGG-------------------TIVLRLLR------------------------------------DETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
MA+ + L +I F T+ P I S + + +LLL IKPSLQG+++N+LL+SWNTSVPLCQWKGLKWVFTNG++L CSDL+SPQWT+LSL+++P +H+ SLQLPSA L G +PRELGELS L+SLYLGVN L G IPLELGYSSSLSDI+L N L+G++PTSIWNLC++L+S ++H N LSG++P PALP+ATC L+ LDFG N+FSG+ P F+T+F LKELDLG N FSG +PE + L LEKLNLS+NNF+G++P FG SKFG DVFEGNNP LCG PL C+GSSGLS GAIAGIVIGLM +VV+ASLLIGY QGK+RK+ D+E E + ED+E G GEGKLILFQGGE+LTLEDVLNATGQVMEKTSYGT+YKAKLADGG T++ +L R E+RVGKPVLNWA+RHKIALG+ARGLAHLH LETP+TH
Sbjct: 1 MALQRFLSLYVIFFIAFTSCPQVFISSSAVASDVQLLLQNIKPSLQGSTNNLLLSSWNTSVPLCQWKGLKWVFTNGTSLVCSDLSSPQWTSLSLYRNPSLHLVSLQLPSANLSGTLPRELGELSTLQSLYLGVNALHGTIPLELGYSSSLSDIELSGNTLSGTLPTSIWNLCEKLVSLKIHGNSLSGSLPNPALPDATCKSLQYLDFGQNIFSGNFPVFITKFNGLKELDLGCNNFSGPVPETLAALKLEKLNLSHNNFSGMLPKFGESKFGMDVFEGNNPTLCGHPLGPCSGSSGLSPGAIAGIVIGLMTALVVVASLLIGYFQGKRRKHADEEVNEFEEVEDEEAGCGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDGSTCLTVIRQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRNLHELLHESRVGKPVLNWARRHKIALGMARGLAHLH-GLETPVTH 494
HSP 2 Score: 157.918 bits (398), Expect = 1.398e-38
Identity = 75/93 (80.65%), Postives = 87/93 (93.55%), Query Frame = 0
Query: 447 PGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRS 538
PGK R+G +DLP+LVK AVLEETT+EVFD+E+LKGIR+PME+GLVQAL+LAMGCCAPVA+VRP+MDEVV+QLEENRPRNRSALYSP ETRS
Sbjct: 571 PGKNGRNGDNVDLPALVKVAVLEETTLEVFDMELLKGIRNPMEEGLVQALRLAMGCCAPVATVRPSMDEVVRQLEENRPRNRSALYSPAETRS 663
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HZX7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 304/466 (65.24%), Postives = 345/466 (74.03%), Query Frame = 0
HSP 2 Score: 186.808 bits (473), Expect = 1.157e-48
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0
Match: F6HZX7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 304/466 (65.24%), Postives = 345/466 (74.03%), Query Frame = 0
Query: 33 TELLLTKIKPSLQGN-SDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDD---ENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGGTIVL----------------------------------------------------RLLRD---ETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
ELLL KIKPSLQG+ SDN+LL+SWNTSVPLCQW+GLKWVF+NGS L C+DL+SP WTNLSL KDP +H+ SLQLPSA L G +P+ELGELS L+SLYL VN L G IPLELGYS SLSD+DLGNN L+G++ +IWNLCDRL+S R+HAN LSG+VP P LPN+TC+ L+ LD G N FSG PEF+TRF LKELDLG+N+FSGSIPEG+ L+LEKLNLSYNNF+GV+P FG SK+G +VFEGNN GLCG PLR C +SGLS GAIAGIVIGLM G VVLASLLIGYVQGKKRK+ + E E +GEDD G G+GKLILFQGGE+LTLEDVLNATGQVMEKTSYGTVYKAKLADGG+I L R L D ETR GKPVLNWA+RHKIALGIARGLA LHT +E PITH
Sbjct: 36 VELLLNKIKPSLQGSYSDNLLLSSWNTSVPLCQWRGLKWVFSNGSPLLCTDLSSPHWTNLSLSKDPSLHLLSLQLPSANLTGSLPKELGELSALQSLYLNVNSLTGTIPLELGYSPSLSDLDLGNNQLSGALTPAIWNLCDRLVSLRLHANRLSGSVPEPVLPNSTCNNLQFLDLGDNQFSGSFPEFVTRFDGLKELDLGNNLFSGSIPEGLAKLNLEKLNLSYNNFSGVLPVFGESKYGVEVFEGNNAGLCGSPLRSCKSNSGLSPGAIAGIVIGLMTGSVVLASLLIGYVQGKKRKSRGENEEEFEEGEDDENGSGGSGDGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTVYKAKLADGGSIALRLLREGSCKDSNSCLPVIKQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRSLHDLLHETRAGKPVLNWARRHKIALGIARGLAFLHT-VEAPITH 500
HSP 2 Score: 186.808 bits (473), Expect = 1.157e-48
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0
Query: 440 EILLGKKPGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRSEI 540
EIL+GKKPGK RSG ++DLPS+VK AVLEETTMEVFDVEVLKGIRSPME+GLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSP+ETRSEI
Sbjct: 570 EILIGKKPGKNGRSGDFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEEGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPSETRSEI 671
BLAST of DCAR_000538 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438H8V5 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:RVW80761.1}))
HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 304/466 (65.24%), Postives = 345/466 (74.03%), Query Frame = 0
HSP 2 Score: 186.422 bits (472), Expect = 1.504e-48
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0
Match: A0A438H8V5 ((Putative kinase-like protein TMKL1 {ECO:0000313|EMBL:RVW80761.1}))
HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 304/466 (65.24%), Postives = 345/466 (74.03%), Query Frame = 0
Query: 33 TELLLTKIKPSLQGN-SDNILLASWNTSVPLCQWKGLKWVFTNGSALSCSDLASPQWTNLSLFKDPLVHVASLQLPSAGLFGKVPRELGELSNLKSLYLGVNHLVGEIPLELGYSSSLSDIDLGNNLLNGSVPTSIWNLCDRLISFRVHANFLSGAVPRPALPNATCDKLEVLDFGHNMFSGDVPEFLTRFTSLKELDLGSNMFSGSIPEGIVGLSLEKLNLSYNNFTGVVPNFGGSKFGGDVFEGNNPGLCGGPLRGCTGSSGLSSGAIAGIVIGLMAGVVVLASLLIGYVQGKKRKNEDDEEYELADGEDD---ENGGGEGKLILFQGGENLTLEDVLNATGQVMEKTSYGTVYKAKLADGGTIVL----------------------------------------------------RLLRD---ETRVGKPVLNWAKRHKIALGIARGLAHLHTSLETPITH 439
ELLL KIKPSLQG+ SDN+LL+SWNTSVPLCQW+GLKWVF+NGS L C+DL+SP WTNLSL KDP +H+ SLQLPSA L G +P+ELGELS L+SLYL VN L G IPLELGYS SLSD+DLGNN L+G++ +IWNLCDRL+S R+HAN LSG+VP P LPN+TC+ L+ LD G N FSG PEF+TRF LKELDLG+N+FSGSIPEG+ L+LEKLNLSYNNF+GV+P FG SK+G +VFEGNN GLCG PLR C +SGLS GAIAGIVIGLM G VVLASLLIGYVQGKKRK+ + E E +GEDD G G+GKLILFQGGE+LTLEDVLNATGQVMEKTSYGTVYKAKLADGG+I L R L D ETR GKPVLNWA+RHKIALGIARGLA LHT +E PITH
Sbjct: 40 VELLLNKIKPSLQGSYSDNLLLSSWNTSVPLCQWRGLKWVFSNGSPLLCTDLSSPHWTNLSLSKDPSLHLLSLQLPSANLTGSLPKELGELSALQSLYLNVNSLTGTIPLELGYSPSLSDLDLGNNQLSGALTPAIWNLCDRLVSLRLHANRLSGSVPEPVLPNSTCNNLQFLDLGDNQFSGSFPEFVTRFDGLKELDLGNNLFSGSIPEGLAKLNLEKLNLSYNNFSGVLPVFGESKYGVEVFEGNNAGLCGSPLRSCKSNSGLSPGAIAGIVIGLMTGSVVLASLLIGYVQGKKRKSRGENEEEFEEGEDDENGSGGSGDGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTVYKAKLADGGSIALRLLREGSCKDSNSCLPVIKQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRSLHDLLHETRAGKPVLNWARRHKIALGIARGLAFLHT-VEAPITH 504
HSP 2 Score: 186.422 bits (472), Expect = 1.504e-48
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0
Query: 440 EILLGKKPGK-ARSGSYLDLPSLVKEAVLEETTMEVFDVEVLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRSEI 540
EIL+GKKPGK RSG ++DLPS+VK AVLEETTMEVFDVEVLKGIRSPME+GLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSP+ETRSEI
Sbjct: 574 EILIGKKPGKNGRSGDFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEEGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPSETRSEI 675
| Match Name | Stats | Description |
|---|---|---|
| A0A6N2BHT8 | E-Value: 4.559e-39, PID: 62.37 | Protein kinase domain-containing protein {ECO:0000... [more] |
| M1BAK8 | E-Value: 4.546e-39, PID: 62.17 | (Serine/threonine-protein kinase PBS1 {ECO:0000313... [more] |
| S4WHD2 | E-Value: 4.546e-39, PID: 62.17 | (Ovary receptor kinase 7 {ECO:0000313|EMBL:AGO9872... [more] |
| A0A3Q7I2W3 | E-Value: 8.315e-39, PID: 61.55 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2G2ZXN6 | E-Value: 1.398e-38, PID: 60.81 | (putative kinase-like protein TMKL1 isoform X4 {EC... [more] |
| A0A1U8G2A9 | E-Value: 1.398e-38, PID: 60.81 | (Putative kinase-like protein TMKL1 {ECO:0000313|E... [more] |
| A0A2G2VYZ7 | E-Value: 1.538e-38, PID: 60.61 | (Putative kinase-like protein TMKL1 {ECO:0000313|E... [more] |
| A0A2G3CVD7 | E-Value: 1.398e-38, PID: 60.61 | (Putative kinase-like protein TMKL1 {ECO:0000313|E... [more] |
| F6HZX7 | E-Value: 1.157e-48, PID: 65.24 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A438H8V5 | E-Value: 1.504e-48, PID: 65.24 | (Putative kinase-like protein TMKL1 {ECO:0000313|E... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |