Resource Type:
Polypeptide
Name:
DCAR_001477
Identifier:
DCAR_001477.mRNA-protein
Sequence:
MEEDEQIATDNVTNSTSTNTNQTTLYSPLQLEAEDEYGDDDGNDDVGDEE
EEEEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAAR
KRKSLSTPLSSSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKK
GRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDP
YYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQ
AMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELV
EAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYL
LVSMLIEGRAYIKALNHIEHAQQAIFCVLQRGNACDRPQIVTEVADSLAN
LKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKAL
PKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELW
WTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKSFLEAIQQKDRAKRKLT
RSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALRE
EKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKS
LASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHG
WDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCV
PPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALG
HRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATF
YEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSS
GAVDLARQACQTKLTGTVAMKHNRNLRTGTDTPIIDAIAPRSSSIAFLSA
SLSVSTKPRFAY*
Sequence Length:
963
Sequence Checksum:
5d441e3a790ca801bf8691bc89798c05
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_001477, derives from mRNA, DCAR_001477. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))
HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 541/912 (59.32%), Postives = 683/912 (74.89%), Query Frame = 0
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))
HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 541/912 (59.32%), Postives = 683/912 (74.89%), Query Frame = 0
Query: 32 EAEDEYGDDDGNDDVGDEEEEEEEDDMSYKMRFEGEMDPLDFIEN-DASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQACQ 911
E +E GD+ + GD + EE E Y+ +F+GEMDPL F E DAS + Y +F+RIE YE LA++KR +L +S P+KKLR ++ +FEEIME M Y RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA LL EVI L P L DPY+ L L+Y + ++K+ + YM+AAH +PKD SLWKLLV S+E+G+ QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISR LRP+ VE L KAT+LY+KCGQ ERAV +LE+ ++ + +A +S++ LL S+L+E AY KAL+HIEHAQQ A F L+ NA + P +V +VADSL N+ YE ALKYY+MLE + +G L+ +IA C L R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP E + D +LWW N IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R PLP+LL +E H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N L +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQ +
Sbjct: 49 EKHEEDGDNSEVSEEGDTDGEEAE----YRFQFQGEMDPLSFAEEEDASGLLPYERFERIEQHYEVLASKKRPALEA-CTSELPTKKLRQEEMLGASFEEIMEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISR---------LRPDNVEVLSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLK 944
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))
HSP 1 Score: 1001.89 bits (2589), Expect = 0.000e+0
Identity = 544/940 (57.87%), Postives = 686/940 (72.98%), Query Frame = 0
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))
HSP 1 Score: 1001.89 bits (2589), Expect = 0.000e+0
Identity = 544/940 (57.87%), Postives = 686/940 (72.98%), Query Frame = 0
Query: 16 TSTNTNQTTLYSPLQLEAEDEYGDDDGNDDVGDEEEE----------EEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLS-TPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQ 908
T T P +LE + E D+ N + + + E EE+ + YK RF EMDPL F E+DAS + Y QF+R+E++YEALAA+KRK+ + P +S PSKKLR +D V+ +F+EI+EAM + RKR RK KK+GRR+G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+V ILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP E + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS QEALYNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ
Sbjct: 7 TETGPQFDAFEHPKELELQVEEEGDNTNVNTKEADNEEEEEDEEEEEEEDGNGEYKFRFGAEMDPLAFTEDDASGLQPYQQFERLEHQYEALAAKKRKARALLPHTSEVPSKKLRLEDSQVDGPGASFDEILEAMNFGM-RKRSRKLKKRGRRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIAR---------RCPNDVEVLRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQ 936
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))
HSP 1 Score: 999.194 bits (2582), Expect = 0.000e+0
Identity = 544/927 (58.68%), Postives = 684/927 (73.79%), Query Frame = 0
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))
HSP 1 Score: 999.194 bits (2582), Expect = 0.000e+0
Identity = 544/927 (58.68%), Postives = 684/927 (73.79%), Query Frame = 0
Query: 19 NTNQTTLYSPLQLEAEDEYGDDDGNDDVGDEEEEEEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLS-TPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQ 908
NTN T + + E EDE ++D ++ G E YK RF EMDPL F E+DAS + Y QF+R+E++YEALAA+KRK+ + P S PSKKLR +D V+ +F+EI+EAM + RKR RK KK+GRR+G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+VSILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++I+Y++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP E + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS N QEA+YNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D E+RKPGYCDL REAAYNLHLIYK SGA DLARQ
Sbjct: 32 NTNVNTKEADNEEEEEDEEEEEDEEEEDGSGE---------YKFRFGAEMDPLAFTEDDASGLQPYQQFERLEHQYEALAAKKRKARALLPSPSEVPSKKLRLEDSQVDGPGASFDEILEAMNFGM-RKRSRKLKKRGRRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLSEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIAR---------RCPNDVEVLRTAAQLYRKCGEAERSVSILEDYLKNHPNEADLSVIHLLAVMHMEDNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIDYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLKLSGNRQEAMYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLAENRKPGYCDLRREAAYNLHLIYKKSGAFDLARQ 939
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))
HSP 1 Score: 994.571 bits (2570), Expect = 0.000e+0
Identity = 518/884 (58.60%), Postives = 664/884 (75.11%), Query Frame = 0
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))
HSP 1 Score: 994.571 bits (2570), Expect = 0.000e+0
Identity = 518/884 (58.60%), Postives = 664/884 (75.11%), Query Frame = 0
Query: 60 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLAR 907
YK +F EMDPL F E DA + Y QF+R++++YEALAA+KRK+++ +S P+KKLR +D + T+EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+R L P VE LK A + Y+KCG+ E AV ILE+++K + TEA++S+I LL + +E A++KAL+ IE A+Q IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLS+E+K EL+++GAQ+ YNI DP HG+DCAR IVNQHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLAR
Sbjct: 70 YKFQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPASEVPAKKLRQEDRQEDGPGATYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIAR---------LCPNDVEVLKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIDLLAVIHMEDNAHLKALDVIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSTPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSLEKKGELQALGAQVGYNIADPIHGFDCARSIVNQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLAR 943
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))
HSP 1 Score: 994.186 bits (2569), Expect = 0.000e+0
Identity = 517/885 (58.42%), Postives = 664/885 (75.03%), Query Frame = 0
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))
HSP 1 Score: 994.186 bits (2569), Expect = 0.000e+0
Identity = 517/885 (58.42%), Postives = 664/885 (75.03%), Query Frame = 0
Query: 60 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQ 908
Y+ +F EMDPL F E DA + Y QF+R++++YEALAA+KRK+++ +S P+KKLR +D + ++EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+R L P VE LK A + Y+KCG+ E AV ILE+++K + EA++S+I+LL + +E A++KAL+ IE A+Q IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L DR+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ
Sbjct: 69 YRFQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPASEVPAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIAR---------LCPNDVEVLKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRDRVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLCNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQ 943
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))
HSP 1 Score: 994.186 bits (2569), Expect = 0.000e+0
Identity = 520/893 (58.23%), Postives = 670/893 (75.03%), Query Frame = 0
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))
HSP 1 Score: 994.186 bits (2569), Expect = 0.000e+0
Identity = 520/893 (58.23%), Postives = 670/893 (75.03%), Query Frame = 0
Query: 52 EEEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQ 908
E EED+ +F EMDPL F E DA + Y QF+R++++YEALAA+KRK+++ +S P+KKLR +D + ++EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+R L P VE LK A + Y+KCG+ E AV ILE+++K + TEA++S+I+LL + +E A++KAL+ IE A+Q IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q+K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ
Sbjct: 21 ELEEDN---NXQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPASEVPAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIAR---------LCPNDVEVLKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQRKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQ 900
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X3C7 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_009781369.1}))
HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 543/947 (57.34%), Postives = 686/947 (72.44%), Query Frame = 0
Match: A0A1U7X3C7 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_009781369.1}))
HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 543/947 (57.34%), Postives = 686/947 (72.44%), Query Frame = 0
Query: 16 TSTNTNQTTLYSPLQLEAEDEYGDDDGNDDVGDEEEE----------EEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLS-TPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHEC-------TYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQ 908
T T P +LE + E D+ N + + + E EE+ + YK RF EMDPL F E+DAS + Y QF+R+E++YEALAA+KRK+ + P +S PSKKLR +D V+ +F+EI+EAM + RKR RK KK+GRR+G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+V ILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP + + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS QEALYNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ
Sbjct: 7 TETGPQFDAFEHPKELELQVEEEGDNTNVNTKEADNEEEEEDEEEEEEEDGNGEYKFRFGAEMDPLAFTEDDASGLQPYQQFERLEHQYEALAAKKRKARALLPHTSEVPSKKLRLEDSQVDGPGASFDEILEAMNFGM-RKRSRKLKKRGRRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIAR---------RCPNDVEVLRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASDLCGSFPESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQ 943
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))
HSP 1 Score: 990.719 bits (2560), Expect = 0.000e+0
Identity = 515/885 (58.19%), Postives = 664/885 (75.03%), Query Frame = 0
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))
HSP 1 Score: 990.719 bits (2560), Expect = 0.000e+0
Identity = 515/885 (58.19%), Postives = 664/885 (75.03%), Query Frame = 0
Query: 60 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQ------------------------------AIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQ 908
Y+ +F EMDPL F E DA + Y QF+R++++YEALAA+KRK+++ +S P+KKLR +D + ++EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+R L P VE LK A + Y+KCG+ E AV ILE+++K + EA++S+I+LL + +E A++KAL+ IE A+Q IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+ KA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ
Sbjct: 64 YRFQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPASEVPAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIAR---------LCPNDVEVLKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFSKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQ 938
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZKV3 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_010252329.1}))
HSP 1 Score: 985.712 bits (2547), Expect = 0.000e+0
Identity = 511/887 (57.61%), Postives = 661/887 (74.52%), Query Frame = 0
Match: A0A1U7ZKV3 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_010252329.1}))
HSP 1 Score: 985.712 bits (2547), Expect = 0.000e+0
Identity = 511/887 (57.61%), Postives = 661/887 (74.52%), Query Frame = 0
Query: 60 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQ------------------------------QAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQACQTKLT 915
Y +RFEGEM+PLDF+E+DA V Y QF+R+E YEALA RKRK+L+ SKK R++D+ + +EIME M + RK R+ K+ RR+GS+ K++P V RKLG+ATLHY+ RYEEA C+LKEVI L P LPDPY+ LGLVY + DKKK + YM+AAH SPKD SLWKLLV S+E+GN QA YCLSKAITADP+D+SL+FDRA+L+++LGDY KAAESYEQI + PE VEA A K+YQKCGQ ERAVSILE+Y+K + T+ + +++ +L S+ +E +Y KAL IE+ Q + +F VL+ +A D+ ++ +VAD+ NL H+E ALKYY MLE N++G LY +IA+C L L DR+ +I ++YKALP+ D++D RL LASLLLEE K+DEAI++L PP + + + + N +P+ WW N +K+KL +IY +G L+ F+D I VR++ F+E + QK R +++L+RS LFERAKVL++ Q DNVF GF+P+ASTSDL KA RAKK LQKK A +EEK+AA LAAG++++SD+SD E PQ R PLP LL DEE++ LI+DLCK+LA+L++YWEALEII+ +LKLA + LS+E+KEELRS+GAQ+AYN +P+HG+DCARYIV +HPYS AWNCYYKVISR++NR+S+H KFL MR KHKDCVPP +I GHQLTM+SQHQAAA++YLEAYKL PD+PLINLCVG+ALINLALG RLQNKHQC++QG AFL NL L ENSQE+LYN+ARAY HVGLVTLA+++YEKVL + EKD+PIPKLPNE+ +++KPGYC+L REAAYNLHLIYK SGA+DLARQ + T
Sbjct: 79 YTLRFEGEMNPLDFVEDDAFGVQPYQQFERLE--YEALAERKRKALADR-QRDGTSKKSRHEDNLGASIDEIMEVMTFGMRRKSRKHKKRG-RRKGSRNKLSPEVTRKLGDATLHYAFGRYEEAICVLKEVILLAPNLPDPYHTLGLVYNAIGDKKKALNFYMIAAHLSPKDPSLWKLLVSWSIEQGNTGQARYCLSKAITADPEDISLKFDRATLHIQLGDYQKAAESYEQILGVCPENVEAR---------NMAAKMYQKCGQVERAVSILEDYIKDHPTDTDWAVVNVLASIHMETNSYAKALQQIENIQSTYSSEKEFPLHLIVRAGICNVHLGNMENAEILFRVLEMEHADDQNDLIIQVADTYMNLGHHESALKYYFMLEKKTGNENGNLYLKIAQCYLSLKDRVNAINFFYKALPRAEDNIDARLTLASLLLEEGKEDEAITLLSPPKELDSSLDMNSVQPKPWWLNGKVKVKLCRIYHAKGMLEEFIDAISSVVRETLFIETMNQKVRIRKRLSRSILFERAKVLNDHQPDNVFCGFKPIASTSDLLKAARAKKSLQKKAARKEEKKAAILAAGLDWQSDDSDDEFPQALREPPLPKLLRDEEHYRLIVDLCKALATLRRYWEALEIINHTLKLAYNMLSIEKKEELRSLGAQVAYNTRNPTHGYDCARYIVQEHPYSLGAWNCYYKVISRMENRFSRHAKFLRRMRSKHKDCVPPMLISGHQLTMVSQHQAAAREYLEAYKLQPDSPLINLCVGTALINLALGLRLQNKHQCLVQGFAFLHNNLRLCENSQESLYNVARAYQHVGLVTLASSYYEKVLTMHEKDFPIPKLPNEDSCLSDNQKPGYCNLRREAAYNLHLIYKRSGALDLARQVLKDHCT 952
BLAST of DCAR_001477 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZV41 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_010252328.1}))
HSP 1 Score: 981.86 bits (2537), Expect = 0.000e+0
Identity = 511/888 (57.55%), Postives = 661/888 (74.44%), Query Frame = 0
Match: A0A1U7ZV41 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_010252328.1}))
HSP 1 Score: 981.86 bits (2537), Expect = 0.000e+0
Identity = 511/888 (57.55%), Postives = 661/888 (74.44%), Query Frame = 0
Query: 60 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKRKSLSTPLSSSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQ------------------------------QAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVE-PPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQACQTKLT 915
Y +RFEGEM+PLDF+E+DA V Y QF+R+E YEALA RKRK+L+ SKK R++D+ + +EIME M + RK R+ K+ RR+GS+ K++P V RKLG+ATLHY+ RYEEA C+LKEVI L P LPDPY+ LGLVY + DKKK + YM+AAH SPKD SLWKLLV S+E+GN QA YCLSKAITADP+D+SL+FDRA+L+++LGDY KAAESYEQI + PE VEA A K+YQKCGQ ERAVSILE+Y+K + T+ + +++ +L S+ +E +Y KAL IE+ Q + +F VL+ +A D+ ++ +VAD+ NL H+E ALKYY MLE N++G LY +IA+C L L DR+ +I ++YKALP+ D++D RL LASLLLEE K+DEAI++L PP + + + + N +P+ WW N +K+KL +IY +G L+ F+D I VR++ F+E + QK R +++L+RS LFERAKVL++ Q DNVF GF+P+ASTSDL KA RAKK LQKK A +EEK+AA LAAG++++SD+SD E P Q R PLP LL DEE++ LI+DLCK+LA+L++YWEALEII+ +LKLA + LS+E+KEELRS+GAQ+AYN +P+HG+DCARYIV +HPYS AWNCYYKVISR++NR+S+H KFL MR KHKDCVPP +I GHQLTM+SQHQAAA++YLEAYKL PD+PLINLCVG+ALINLALG RLQNKHQC++QG AFL NL L ENSQE+LYN+ARAY HVGLVTLA+++YEKVL + EKD+PIPKLPNE+ +++KPGYC+L REAAYNLHLIYK SGA+DLARQ + T
Sbjct: 79 YTLRFEGEMNPLDFVEDDAFGVQPYQQFERLE--YEALAERKRKALADR-QRDGTSKKSRHEDNLGASIDEIMEVMTFGMRRKSRKHKKRG-RRKGSRNKLSPEVTRKLGDATLHYAFGRYEEAICVLKEVILLAPNLPDPYHTLGLVYNAIGDKKKALNFYMIAAHLSPKDPSLWKLLVSWSIEQGNTGQARYCLSKAITADPEDISLKFDRATLHIQLGDYQKAAESYEQILGVCPENVEAR---------NMAAKMYQKCGQVERAVSILEDYIKDHPTDTDWAVVNVLASIHMETNSYAKALQQIENIQSTYSSEKEFPLHLIVRAGICNVHLGNMENAEILFRVLEMEHADDQNDLIIQVADTYMNLGHHESALKYYFMLEKKTGNENGNLYLKIAQCYLSLKDRVNAINFFYKALPRAEDNIDARLTLASLLLEEGKEDEAITLLSPPKELDSSLDMNSVQPKPWWLNGKVKVKLCRIYHAKGMLEEFIDAISSVVRETLFIETMNQKVRIRKRLSRSILFERAKVLNDHQPDNVFCGFKPIASTSDLLKAARAKKSLQKKAARKEEKKAAILAAGLDWQSDDSDDEFPQQALREPPLPKLLRDEEHYRLIVDLCKALATLRRYWEALEIINHTLKLAYNMLSIEKKEELRSLGAQVAYNTRNPTHGYDCARYIVQEHPYSLGAWNCYYKVISRMENRFSRHAKFLRRMRSKHKDCVPPMLISGHQLTMVSQHQAAAREYLEAYKLQPDSPLINLCVGTALINLALGLRLQNKHQCLVQGFAFLHNNLRLCENSQESLYNVARAYQHVGLVTLASSYYEKVLTMHEKDFPIPKLPNEDSCLSDNQKPGYCNLRREAAYNLHLIYKRSGALDLARQVLKDHCT 953
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9UNW3 | E-Value: 0.000e+0, PID: 59.32 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A1U7X4H4 | E-Value: 0.000e+0, PID: 57.87 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A1J6ICB1 | E-Value: 0.000e+0, PID: 58.68 | (Uncharacterized protein {ECO:0000313|EMBL:OIT0268... [more] |
| A0A2G2V9C0 | E-Value: 0.000e+0, PID: 58.60 | (Uncharacterized protein {ECO:0000313|EMBL:PHT2950... [more] |
| A0A1U8HFC8 | E-Value: 0.000e+0, PID: 58.42 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A2G3DFP9 | E-Value: 0.000e+0, PID: 58.23 | (Uncharacterized protein {ECO:0000313|EMBL:PHU2981... [more] |
| A0A1U7X3C7 | E-Value: 0.000e+0, PID: 57.34 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A2G3AIW9 | E-Value: 0.000e+0, PID: 58.19 | (Uncharacterized protein {ECO:0000313|EMBL:PHT9418... [more] |
| A0A1U7ZKV3 | E-Value: 0.000e+0, PID: 57.61 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A1U7ZV41 | E-Value: 0.000e+0, PID: 57.55 | (general transcription factor 3C polypeptide 3 iso... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |