MRWTIVLHVLLMCVIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLC
TGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNN
NFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNH
FMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPI
PSALSDEPSSSFAGNNLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAI
IIISSLLLHRQNRSKKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAV
VVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDF
AENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLP
HGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDH
RLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEW
TGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGL
KEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG*
Relationships |
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The polypeptide, DCAR_000678, derives from mRNA, DCAR_000678. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5J5ADI5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 378/630 (60.00%), Postives = 455/630 (72.22%), Query Frame = 0
Query: 10 LLMCVI--FGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLI-ANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAECPPSKKK-SVPKVAIIVAAAVAIALAIIIISSLLL------------------------------------HRQNRSKK--------------RFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 585 + C+I +G +D E E LL F+ SL N AL+NWN+ SLC G+ NW G++C+ F+GL+LE+MGL GIID+ +LS+L LRTVSFMNN+F GP P +LR L+LSNN F+GEIP+DAF GM + +VYL NN F GK+P SLA L KL++L L+NN+F G++P+ + L N NNK EGPIP++LS+ +S F+GNNLC P+ C SKKK S+PK+AII+ ALA I+++S L HR+N +KK RF+LQDLLRASAEVL SGS GSSYKA+LLSGPAVVVKR++QMSNVGK EF+EHMR LGSL+HPNLLPLVAFYY KEEKLLI DF ENGSLASHLHS P +QP LDWPTRL+IIKGVAKGL +L+K L LPHGHLKSSNVLLD+TF PLLADY L P++NK+HA MVAYKSPE +Q D R T+KTDVW LGILILELLTGKFPANYL+QGKG NADLA+WVNSVVREEWTGEVFD MK TKN E EMLKLLKIGMCCCEWNV+ RWD+ EA KI+ LKE + DE+ SSY S+G+ YSS+ +T+D+F+FSVTG Sbjct: 1 MFTCIIVTYGFTD-QEVETLLKFRDSLFNTTALNNWNKS-SLCKGNGSNWTGVICVNDDFYGLQLENMGLKGIIDIGTLSELSSLRTVSFMNNHFEGPIPEIKKLGGALRGLFLSNNQFNGEIPDDAFDGMKSLTKVYLANNTFTGKLPTSLARLPKLLELWLENNQFEGQLPDFRSTALRDVNVANNKFEGPIPASLSNMSASFFSGNNLCDKPLDPCKSSKKKRSIPKIAIILVIVGVAALAAIVLASFLFRGRRRPKTSQMGKSSAAKIHKNDVQYKKAGSAPLPDHRENYNKKSENGKLYFVRNGRERFDLQDLLRASAEVLESGSFGSSYKALLLSGPAVVVKRFRQMSNVGKEEFHEHMRRLGSLTHPNLLPLVAFYYKKEEKLLITDFIENGSLASHLHSKPSPDQPALDWPTRLKIIKGVAKGLAYLHKELSALTLPHGHLKSSNVLLDDTFEPLLADYALAPVVNKDHAQQIMVAYKSPEFTQRD-RTTKKTDVWSLGILILELLTGKFPANYLKQGKGANADLATWVNSVVREEWTGEVFDKEMKGTKNGEGEMLKLLKIGMCCCEWNVETRWDMWEAFEKIEELKERDADEEYSSYGSEGDVYSSRAVTEDDFSFSVTG 627
Match: A0A7J0GYC0 ((Leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:GFZ15524.1}))
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 389/634 (61.36%), Postives = 463/634 (73.03%), Query Frame = 0
Query: 3 WTIVL-HVLLMCVIFGSSD-DSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDL-IANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLH-----------------------RQNRS------------------------KKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 585 W I+L HV L C + S D + EA+ LL FK+SLSN ALSNWNE ++LCTG+ NW GL+CL G+ F L+LE MGL G+I++E+L+KLP LRTVSFMNN F+GP P +LR L+LS N FSG+IP+DAF GMN +RRVYL NN F GKIPKSLA L +L D L N+F G IP+ K+L N +NN+L GPIP +L + SSF+GN+ LCG P+ C SKKK V K+AII+AAAV ALA III+S +LH +QN+ ++RF+LQDLLRASAEVLGSGS GSSYKA LL+GP +VVKR++ MSNVG+ EF+E+M LG LSHPNLLPLVAFYY KEEKLLI DF +N SLASHLH NQP L+WPTRLRII+GVA+GL +LYK FP+L LPHGHLKSSNVLLD+ F PLLADY LVP++NKEHA FM AYKSPE +Q D T+KTDVW LGILILE+LTGKFPANYL+QGKGGNADLA+WVNSVVREEWTGEVFD MK KN+E EMLKLLKIGMCCCEWNV+RRW L A+ KI+ LKE ++DED SSYAS+GE YSS+ MTD++F+FSV G Sbjct: 10 WLILLVHVALTCFVVASGDSEEEAKTLLKFKESLSNDIALSNWNESINLCTGNVSNWKGLICLNGAVFRLQLEGMGLRGMINIEALAKLPSLRTVSFMNNAFDGPMPQVKELGGALRGLFLSGNKFSGDIPDDAFTGMNALRRVYLENNEFTGKIPKSLAELPRLADGWLHGNQFEGEIPDFVSKELRTVNLSNNRLRGPIPDSLQNMSLSSFSGNDGLCGKPLDPCK-SKKKDVAKIAIIIAAAVVAALAAIIIASFILHGRRTQKKQLEQSTAKPYKELANYKQNKEYQSPGHQETYKKSESVKLDFVRNERERFDLQDLLRASAEVLGSGSFGSSYKARLLTGPTMVVKRFRHMSNVGRDEFHEYMIRLGRLSHPNLLPLVAFYYKKEEKLLITDFVKNDSLASHLHGKQNPNQPGLNWPTRLRIIRGVARGLAYLYKEFPSLTLPHGHLKSSNVLLDQNFEPLLADYALVPVINKEHAQQFMAAYKSPEFTQYD-LTTKKTDVWSLGILILEMLTGKFPANYLKQGKGGNADLAAWVNSVVREEWTGEVFDKDMKGRKNSEGEMLKLLKIGMCCCEWNVERRWALTLAVEKIEELKERDSDEDYSSYASEGEMYSSRAMTDEDFSFSVNG 641
Match: A0A2R6PNE8 ((Pollen receptor-like kinase {ECO:0000313|EMBL:PSR93577.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 379/633 (59.87%), Postives = 450/633 (71.09%), Query Frame = 0
Query: 3 WTIVL-HVLLMCVIFGSSD-DSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDL-IANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKK----------------------------------------------RFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 585 W I+L H L C + S D + EA+ LL FK+SLSN ALSNWNE ++LCTG+ NW GL+C G+ FGL+LE MGL G+I++E+L+KLP LRTVSFMNN F+GP P +LR L+LS N FSG+IP+DAF GMN +RRVYL NN F GKIPKSLA L +L L N+F G IP+ K+L N +NN+L GPIP +L + SSF+GN+ LCG P+ C KK II AA VA III S +L R+ + K+ RF+LQDLLRASAEVLGSGS GSSYKA LL+GP +VVKR++ MSNVG+ EF+E+M LG LSHPNLLPLVAFYY KEEKLLI DF +N SLASHLH NQP L+WPTRLRII+GVA+GL +LYK FP+L LPHGHLKSSNVLLD+ F PLLADY LVP++NKEHA FM AYKSPE +Q+D R T+KTDVW LGILILE+LTGKFPANYL+QGKGGNADLA+WVNSVVREEWTGEVFD MK KN+E EMLKLLKIGMCCCEWNV+RRW L A+ KI+ LKE ++DED SSYAS+GE YSS+ MTD++F+FSV G Sbjct: 10 WLILLVHFALTCFVVASGDSEEEAKTLLKFKESLSNDIALSNWNESINLCTGNVSNWKGLMCSNGAVFGLQLEGMGLRGMINMEALAKLPSLRTVSFMNNAFDGPMPQVKELGGALRGLFLSGNKFSGDIPDDAFTGMNALRRVYLENNEFTGKIPKSLAELPRLAAGWLHGNQFEGEIPDFVSKELRTVNLSNNRLRGPIPDSLQNMSLSSFSGNDGLCGKPLDPCKSKKKDIAKIAIIIAAAVVAALATIIIASFILRGRRTQKKQLEQSSAKPYKELANYKQNKEYQLPGHQETYKKSESVKLDFVRNERERFDLQDLLRASAEVLGSGSFGSSYKAKLLTGPTMVVKRFRHMSNVGRDEFHEYMIRLGRLSHPNLLPLVAFYYKKEEKLLITDFVKNDSLASHLHGKQNPNQPGLNWPTRLRIIRGVARGLAYLYKEFPSLTLPHGHLKSSNVLLDQNFEPLLADYALVPVINKEHAQQFMAAYKSPEFTQHD-RTTKKTDVWSLGILILEILTGKFPANYLKQGKGGNADLAAWVNSVVREEWTGEVFDKDMKGRKNSEGEMLKLLKIGMCCCEWNVERRWALTVAVEKIEELKERDSDEDYSSYASEGEMYSSRAMTDEDFSFSVNG 641
Match: A0A6I9SZ97 ((probable LRR receptor-like serine/threonine-protein kinase At4g31250 {ECO:0000313|RefSeq:XP_011076339.1}))
HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 372/620 (60.00%), Postives = 454/620 (73.23%), Query Frame = 0
Query: 3 WTIVLHVLLMCVIFGSSDD--SEAEILLDFKKSLSNAGALSNWNEEVS-LCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGN-NLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKK------------------------------------RFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFS 582 W I L +L +C I SS D + A+ LL FK+SL+N L NW E V LC+ + WNG LC+ SF+GL+LE MGL G +DV+SLS+LP LR++S MNNNF+GPFP N+NK+ LR L+L+NNNFSGEIP+DAF GM M +V LG+N FMGKIP SL GL +LVDLQLQ+N+F GRIP+ Q DL NF+NNKLEG IP+ L D+ +SSF+GN NLCG P+ C +K S K+AII+AA V +ALA I+ + R+ + K +FEL++LLRASAEVLGSGS GSSYKA+L +G VV+R++ MSNVGK EFYEHMR LG L+H NLLPL+AFYY KEEKLLI DF ENGSLAS LH NQP LDWP RLRIIKGVA+GL +LYK P L LPHGHLKSSN+L+D T+ PLLADY L P++NK+HA FMVAYKSPES+QND +TRKTDVW LGILILELLTG+FPANYL+QG+G +ADLASWVNSVVREEWTGEVFD + +N E +ML+LLKIGMCCCEWNV++RW EA+ KI+ LKE ++D+D SSYAS+G+ YSS+ MTDD+F+FS Sbjct: 8 WFITLLMLSLCAIPASSQDDTAYAKSLLKFKESLTNVTMLDNWREPVQKLCSWNTPVWNGCLCVNDSFWGLKLEGMGLGGKLDVDSLSELP-LRSLSVMNNNFSGPFPSNINKLGKLRGLFLANNNFSGEIPDDAFSGMRAMTKVVLGDNSFMGKIPMSLLGLPRLVDLQLQDNQFNGRIPDFWQADLKVNFSNNKLEGAIPNTLRDQNASSFSGNLNLCGEPLDPC--KRKNSTKKIAIIIAAVVVLALAAFIVLFVFYRRRQKPLKHEKSVDHLQTEEPNKGTVTYKNSEHGKLYFVRNDTQKFELEELLRASAEVLGSGSFGSSYKAVLFTGQTYVVRRFRNMSNVGKEEFYEHMRRLGRLTHRNLLPLIAFYYRKEEKLLITDFVENGSLASLLHGKRTPNQPLLDWPMRLRIIKGVARGLAYLYKELPMLTLPHGHLKSSNILVDATYEPLLADYALAPVINKDHAKEFMVAYKSPESTQNDM-VTRKTDVWSLGILILELLTGRFPANYLKQGRGPSADLASWVNSVVREEWTGEVFDKDVSLARNGEGQMLRLLKIGMCCCEWNVEKRWGFREAVEKIEELKERDSDDDYSSYASEGDLYSSRAMTDDDFSFS 623
Match: A0A5N6MW01 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 366/631 (58.00%), Postives = 455/631 (72.11%), Query Frame = 0
Query: 6 VLHVLLMC--VIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLK-GSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLH----RQNRS---------------------------------------------KKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVT 584 ++H+LL+ VI+G D A L+ FK SL+N G L+NW+ V C G+ NW GL+C K GS FGL+L++MGLSG ID+++L+++ +RT+SF+NN+F G P N+ K+ LR ++LS N FSG I DAFKGM+ +R+V LGNN+F+GKIP SL+ L LVDLQLQ+N+F G IP+ +Q DL NF NNKL+G IP L ++ SSFAGN+LCG P++ C + K + + IIVAA+V LAIII++ +L R+N++ ++RFEL+DLLRASA+VLGSGS GSSYKA+L P VVVKR+K+MSNVGK EFY HMR LGSLSHPNLLPL+AFYY K+EKLL+ DFAENGSLASHLH + ++P LDW TRL+IIKGVA+GL+HLY P L LPHGHLKSSNVLLD+ F PLL+DYGLVP++NKEHA H MVAYKSPE +Q+ H T+KTDVWCLGILILE+LTGKFPANYL QGKGG DL +WVNSVVREEWTGEVFD MK TKN E EMLKLLKIGM CCEW++ RR D+ EA+ KI GLKE +DE+ SSYAS+G+ YSS+ M DD F+FSVT Sbjct: 16 LIHILLISSPVIYGQQD--PAAQLIKFKSSLNNTGDLTNWDPNVPPCAGESPNWKGLICNKDGSVFGLQLQNMGLSGTIDMDTLAQITSIRTLSFINNSFEGTLP-NLLKIGPLRGIFLSYNKFSGVIDGDAFKGMSSLRKVELGNNNFVGKIPISLSQLPILVDLQLQDNQFEGEIPDFEQNDLKVNFANNKLDGHIPKGLRNQDPSSFAGNDLCGKPLSNCKKTLNKKL--IIIIVAASVLAVLAIIIMTLFILRTRKTRKNKNIKRQLTKPDRKNTYKTNANEIQMQTKLETYKRTDNGGKLHFLRTDRERFELEDLLRASADVLGSGSFGSSYKAMLADRPPVVVKRFKEMSNVGKEEFYAHMRLLGSLSHPNLLPLLAFYYKKDEKLLVTDFAENGSLASHLHVKRRPDEPGLDWATRLKIIKGVAQGLDHLYNELPRLSLPHGHLKSSNVLLDDEFNPLLSDYGLVPVINKEHAQHLMVAYKSPEFTQHKHT-TKKTDVWCLGILILEMLTGKFPANYLEQGKGGKPDLGTWVNSVVREEWTGEVFDKDMKGTKNGEGEMLKLLKIGMRCCEWDIARRCDMREAVEKIQGLKEREDDEEYSSYASEGDGYSSRAMDDDNFSFSVT 640
Match: A0A834YW47 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8392766.1}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 359/622 (57.72%), Postives = 454/622 (72.99%), Query Frame = 0
Query: 13 CVIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIA-NFTNNKLEGPIPSALSDEPSSSFAGN-NLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLL-HRQNRS------------------------------------------------KKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSV 583 CV+ S D S++++L FK+SL+N AL NWN S C+G+KGNW G+LC KG+ GL+LE+MGL G+IDV+SL LP LRTVSFMNN+F GP P ++ K+ +L++L+LSNNNFSGEIP++AF GM ++++YL NN F GKIP SL + +L+ L+L+ N+F G+IP+ +QKDL A N +NN+LEG IP+ LS +SSF+GN +LCG P+ C SKK SV +A++V A V +ALA I +++ HR+ ++ ++RF+LQDLLRASAEVLGSGS GSSYKA+LLSGPA+VVKR++QM+NVG+ EF EHMR LG L HPNLLPLVA+YY KEEKLL++DF ENGSLA HLH QP LDWPTRL+IIKGVAKGL +LY P L +PHGHLKSSNVLLDE PLL DY LVP++N+EHA M+AYKSPE +Q R T+KTDVW LGILILE+LTGKFPANYL+QGK G+ DLASWVNSVVREEWTGEVFDN M TKN + EMLKLLKIG+ CCE +V+RRWDL +AI KI+ L+E ++DE+ SSYAS+GE YSS+ T+D+F+FS+ Sbjct: 108 CVV-ASCDASDSDVLFKFKESLANDTALGNWNASTSPCSGNKGNWVGVLCSKGTVLGLQLENMGLMGLIDVDSLMGLPNLRTVSFMNNSFEGPMP-DIKKLGALKSLFLSNNNFSGEIPDEAFAGMGSLKKIYLANNEFTGKIPLSLVAVPRLLQLRLEGNQFQGKIPDFRQKDLRAFNVSNNELEGKIPAGLSKMDTSSFSGNKDLCGKPLDTCKSSKKPSVLMIAMVVIA-VGVALAAIGAFFIIIRHRRRQTSESGKSPSTNKQNKVVSSEGDQMESGSPEFAGTNKKAENGKLSFVRDDRERFDLQDLLRASAEVLGSGSFGSSYKAVLLSGPAMVVKRFRQMNNVGREEFQEHMRRLGRLRHPNLLPLVAYYYRKEEKLLVSDFVENGSLAGHLHGKHTSAQPGLDWPTRLKIIKGVAKGLAYLYNELPTLIVPHGHLKSSNVLLDEFLEPLLTDYALVPVVNQEHAQELMIAYKSPEYAQYG-RTTKKTDVWSLGILILEMLTGKFPANYLKQGKRGDGDLASWVNSVVREEWTGEVFDNEMGGTKNGQGEMLKLLKIGLDCCERDVERRWDLGDAIEKIEELRERDSDEEYSSYASEGEMYSSRAQTEDDFSFSL 725
Match: A0A061GI23 ((Leucine-rich repeat protein kinase family protein, putative {ECO:0000313|EMBL:EOY29078.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 363/609 (59.61%), Postives = 443/609 (72.74%), Query Frame = 0
Query: 21 DSEAEILLDFKKSLSN-AGALSNWNEEV-SLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLI-ANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLL---------------------------------------LHRQNRSKKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNND-EDQSSYASDGEAYSSKGMTDDEFTFSVTG 585 ++EA ILL FK SLSN ALS+WN+ S CTGD NW GL C G+ FGLRLESMGL G+ID+++L++LP LRT+SFMNN+F+G P ++NK++SLRALYLS N FSGEI E+ F MN +++VYL N+F GKIPKSLA L +L +L L+ N+F G+IP+ +QKDLI N +N+LEG IP +L+ SS FAGN LCG P+ +C SKK+++ + ++ + V++A AI +S + L+ + RFELQDLLRASAEVLGSGS GSSYKA+LL G A+VVKR++QM+NVGK EF HM LG L HPNLL LVAFYY KEEKLL++DF NGSLA HLH+ +Q LDWPTRL+IIKGVAKGL +LYK P+L LPHGHLKSSNVLLD F PLL DYGL+P++NKEHA FMVAYKSPE +Q D R T KTDVW LGILILELLTGKFPANYL+QGKGGN DLA+WVNSVVREEWTGEVFD MK TKN E EMLKLLKIGMCCCEWN +RRW+L +A+ KI+ LKE ++D ED SS S+G+AYSS+ +T+D F+FSV G Sbjct: 26 ETEATILLRFKNSLSNHESALSDWNDSAPSPCTGDNSNWTGLRCSNGTIFGLRLESMGLMGVIDIDTLTELPLLRTLSFMNNSFDGQLP-DVNKLTSLRALYLSYNRFSGEIRENGFAAMNSLQKVYLARNNFSGKIPKSLAALPRLSELSLEGNRFEGKIPDFQQKDLIMVNLADNQLEGRIPDSLTKMNSSLFAGNKGLCGKPLPQCKSSKKRNIIIITVVAGSVVSLA-AIAAVSYIRSGPTTTSQVKNFQEKNAGNIVGRKEAQSSNHYRKAENAKLYFIRNERGRFELQDLLRASAEVLGSGSFGSSYKAVLLDGRAMVVKRFRQMNNVGKEEFRAHMGRLGMLFHPNLLSLVAFYYRKEEKLLVSDFVPNGSLAGHLHARRAPDQSGLDWPTRLKIIKGVAKGLAYLYKELPSLTLPHGHLKSSNVLLDHNFEPLLTDYGLMPVINKEHAQQFMVAYKSPEFTQYD-RTTTKTDVWSLGILILELLTGKFPANYLKQGKGGNVDLATWVNSVVREEWTGEVFDKDMKSTKNGEGEMLKLLKIGMCCCEWNTERRWELKDAVEKIEELKERDSDMEDCSSCGSEGDAYSSRAITEDGFSFSVNG 631
Match: A0A2C9UBC3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 364/612 (59.48%), Postives = 439/612 (71.73%), Query Frame = 0
Query: 18 SSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLL-------------------------------------------LHRQNRSKKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 585 SS DS A IL+ FK L+N+ AL NWNE V+ C NW GL C G+ L LESMGLSG ID++ L +LP LR +S MNN+F GP P +NK++SLRALYLS+N FSGE+ +DAF GMN + ++YL NN+F G IP SL LSKLV L L+NN+F G+IP+ +Q + N +NN L G IP+AL+ +SFAGN+ LCG P++ C SKKK++ + I+V A IALA++I + LH ++RF+LQDLLRASAEVLGSG+ GSSYKA+LL GPA+VVKR+++M+NVGK EF EHM LG LSH NLLPLVAFYY K+EKLLI DF ENGSLASHLH+ QP LDWPTRL+I+KGVA+GL +L+K FP L LPHGHLKSSNVLLD TF PLL DYGLVP++NK HA MVAYKSPE +++D R TRKTDVW LGILILELLTGKFPANYLRQGKG NADLA+WVNSVVREEWTGEVFD M+ TKN E EMLKLLKIGMCCCEW V+RRWDL EA+ KI+ LKE +ND+D SS AS+GE SS+ MT+D+F+FS+ G Sbjct: 21 SSSDSNAAILITFKNLLTNSEALYNWNETVNPC-----NWVGLHCKDGAIDKLALESMGLSGKIDIDLLVQLPKLRALSLMNNSFEGPLPA-LNKLASLRALYLSSNKFSGELADDAFAGMNSLIQLYLANNNFTGPIPSSLLPLSKLVRLSLENNQFEGQIPDFQQNFSLFNVSNNHLNGEIPAALASINPTSFAGNDGLCGKPLSACKSSKKKTI--IIIVVVTASVIALAVLIAFAYFRGSRKKTTQVKQLQVQGTKAQTKFAVMGQNEFARSPDNDHKGQLHLVRNDRERFDLQDLLRASAEVLGSGNFGSSYKALLLDGPAMVVKRFREMNNVGKQEFQEHMSRLGRLSHRNLLPLVAFYYRKDEKLLIFDFVENGSLASHLHAKRASGQPALDWPTRLKIVKGVARGLAYLHKEFPTLTLPHGHLKSSNVLLDHTFEPLLTDYGLVPVVNKPHAQQVMVAYKSPEFTRSD-RTTRKTDVWSLGILILELLTGKFPANYLRQGKGANADLATWVNSVVREEWTGEVFDMDMRGTKNGEGEMLKLLKIGMCCCEWRVERRWDLREAVDKIEELKERDNDDDLSSNASEGEFCSSRAMTEDDFSFSING 623
Match: A0A2Z7BC14 ((Leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:KZV29456.1}))
HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 359/617 (58.18%), Postives = 446/617 (72.29%), Query Frame = 0
Query: 6 VLHVLLMCVIFGSSDDSEA-EILLDFKKSLSNAGALSNWNEEVS-LCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNR--------------------------------------SKKRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFS 582 V VLL+C I S DD+++ L++F+K L+NA L++W E V+ LC+ W G +C G F GL+LE MGL G ID++SLS LP ++S MNN+F+GPFP ++N + LR LYL+NN F+G I + AF GM MRRV LGNN F G IP SL L LVDLQLQ+N+F G+IP+ Q DLI NF+ NKLEG IP+ L ++ +S+F GN LCG P+ C P K K+ II+A AV + LA++II L+L R+ + +++RFEL++LLRASAEVLGSGS GSSYKA+L G VV+R++QM+NVGK EF EHMR LG LSHPNLLPLVAFY+ KEEKLLI DFAENGSLASHLHS NQP LDWPTRLRIIKGV++GL +LY+ P L LPHGHLKSSNVLL TF PLL+DY LVP+++K+HA FMVAYKSPESSQNDH +TRKTD+W LGILILELLTGKFPANYL+QG+G +ADLA+WVNSVVREEWTGEVFD M + AE +ML+LLKIGMCCC+W+V++RWD EA+ KI LKE ++D+D SSYAS+ + YSS+ MTDD+F+FS Sbjct: 19 VFCVLLLCAIPSSGDDTDSSRSLIEFRKFLTNATMLNDWKEPVANLCSPI---WTGCVCTHGVFTGLKLEGMGLGGTIDIQSLSNLPSFYSLSVMNNSFSGPFPSDLNSLRKLRRLYLANNKFNGGIQDKAFSGMTGMRRVVLGNNKFTGNIPLSLLQLPGLVDLQLQSNQFEGKIPDFWQADLIVNFSYNKLEGSIPATLRNQNASAFYGNKLCGKPLDACKP--KILTWKIGIIIAVAVGVGLAVVIILFLILRRRVKPLKYQKSIDKFHKEEQIPSKSGTFKNSSEHGKLQFVRNNRQRFELEELLRASAEVLGSGSFGSSYKAVLFGGQPYVVRRFRQMNNVGKEEFQEHMRKLGRLSHPNLLPLVAFYHRKEEKLLITDFAENGSLASHLHSKRSPNQPGLDWPTRLRIIKGVSRGLAYLYEELPTLTLPHGHLKSSNVLLGSTFEPLLSDYALVPVIDKDHAQKFMVAYKSPESSQNDH-VTRKTDIWSLGILILELLTGKFPANYLKQGRGPSADLATWVNSVVREEWTGEVFDKDMNLARRAEGQMLRLLKIGMCCCDWDVNKRWDWKEAVEKIQELKEKDSDDDFSSYASEVDVYSSRTMTDDDFSFS 629
Match: A0A6S7NPK8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 363/636 (57.08%), Postives = 450/636 (70.75%), Query Frame = 0
Query: 2 RWTIVLHVLLMCVIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLK-GSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAE-CPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSK----------------------------------------------------KRFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSV 583 +W ++ L V+ SD ++ L+ FK SL N LS+WN V C DK NW G++C K GS GL+LE+MGL+G ID++ LS++P +RT+SF NN F G P ++ K+ LR++YLSNNNFSG I D F GM+ MR++ + +N F G+IP+SL G+S LVDLQ+Q+N+F G IPN +QK L NF NN+L GPIP L ++ ++SFAGNNLCG P+ C SK K K II A+ I LAII++S L++ + + K +RF+LQDLLRASAEVLG GS GSSYKA L+ GPAVVVKR+ +M+NV K FY+HMR LG+LSHPNLLPLVAFYY K+EKLLI DFAENGSLASHLH K N+P LDWPTRL+I+KGVA+GL++LY+ PNL LPHGHLKSSNVLLD+TF PLLADYGL P++NK H+ FMVAYKSPE +++D R T KTDVWCLGILILE+LTGKFPANYL+QGKGG++DL +WVNSVVREEWTGEVFD MK TKN E EMLKLLKIGMCCCEW++++RWDL AI KI LKE +DE+ SSYASDG+AYSS+ MTDD+F+FS Sbjct: 5 KWLLLAFFLFTTVL---SDTTDITNLIAFKNSLGNPKPLSDWNPNVEPCNLDKENWTGIICGKNGSVLGLQLENMGLTGTIDMDILSEIPSIRTLSFANNGFGGSMP-DVRKIGLLRSIYLSNNNFSGVIGNDLFAGMSSMRKIEVQSNKFSGRIPESLTGMSILVDLQMQDNEFEGEIPNFEQKSLKVNFANNRLNGPIPRGLMNQNATSFAGNNLCGEPLTNPCKISKNKHTLKTFIIAIVAIIIVLAIIVLSLLIIRSKTKPKNNYKYQQTTKLNNNPYKFNTNEIQMHHHEEDEEKNPKRSENGGKLQFVRGDRERFDLQDLLRASAEVLGGGSFGSSYKASLMGGPAVVVKRFTEMNNVKKEGFYDHMRRLGNLSHPNLLPLVAFYYKKDEKLLITDFAENGSLASHLHGKRKPNEPGLDWPTRLKILKGVAQGLDYLYEELPNLSLPHGHLKSSNVLLDKTFNPLLADYGLTPVVNKHHSQEFMVAYKSPEFTRHD-RTTTKTDVWCLGILILEMLTGKFPANYLKQGKGGSSDLETWVNSVVREEWTGEVFDKEMKGTKNCEGEMLKLLKIGMCCCEWSIEKRWDLKMAIEKISELKERGSDEEYSSYASDGDAYSSRAMTDDDFSFSA 635
Match Name | Stats | Description |
---|---|---|
A0A5J5ADI5 | E-Value: 0.000e+0, PID: 60.00 | Protein kinase domain-containing protein {ECO:0000... [more] |
A0A7J0GYC0 | E-Value: 0.000e+0, PID: 61.36 | (Leucine-rich repeat protein kinase family protein... [more] |
A0A2R6PNE8 | E-Value: 0.000e+0, PID: 59.87 | (Pollen receptor-like kinase {ECO:0000313|EMBL:PSR... [more] |
A0A6I9SZ97 | E-Value: 0.000e+0, PID: 60.00 | (probable LRR receptor-like serine/threonine-prote... [more] |
A0A5N6MW01 | E-Value: 0.000e+0, PID: 58.00 | Protein kinase domain-containing protein {ECO:0000... [more] |
A0A834YW47 | E-Value: 0.000e+0, PID: 57.72 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8392... [more] |
A0A061GI23 | E-Value: 0.000e+0, PID: 59.61 | (Leucine-rich repeat protein kinase family protein... [more] |
A0A2C9UBC3 | E-Value: 0.000e+0, PID: 59.48 | Protein kinase domain-containing protein {ECO:0000... [more] |
A0A2Z7BC14 | E-Value: 0.000e+0, PID: 58.18 | (Leucine-rich repeat protein kinase family protein... [more] |
A0A6S7NPK8 | E-Value: 0.000e+0, PID: 57.08 | Protein kinase domain-containing protein {ECO:0000... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |