DCAR_000583

Resource Type: 
Polypeptide
Name: 
DCAR_000583
Identifier: 
DCAR_000583.mRNA-protein
Sequence: 
MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLV
SVERELMSSPSDLVPLSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFI
SQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHN
SCHQVPGVQSTSSTCYTKENDSWCSDMLPEFIDYPMTAEGNNYTEGGKVS
SPVGLSEDCSMSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVP
AISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQ
LQVQQQPLVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQ
SQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKL
GGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQ
NLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGR
CLKMMFEKQQESGTDNPSAQSTVGIGNNHAQDGPKTTHMQHQVIRLSPDD
VDEELEVIEGGSEKFKDARTEPETETSKDPWADVTGGCDVQPENHVILID
*
Sequence Length: 
601
Sequence Checksum: 
efc9c414eb49fbdfec2a681526e4dbb2
View location in JBrowse: 
DCARv2_Chr1:639624..643306+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_000583, derives from mRNA, DCAR_000583.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835N928 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9688509.1}))

HSP 1 Score: 311.227 bits (796), Expect = 3.654e-96
Identity = 225/596 (37.75%), Postives = 298/596 (50.00%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLV---PLSYNNGTVGHIFS---GFSKESHFSIASPHEKHSET--FISQ-TANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHNSCHQVPGVQSTSSTCYTKEND-SWCSDMLPEFIDYPM-TAEGNNYTEGGKVSSPVGLSEDCSMSSD---LLDQLLNNNDALTSNWDH-FENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQQPLVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQESGTDNPSAQSTVGIGNNHAQDGPKTTHMQHQVIRLSPDDVDEELEVIEGGSEKFKDARTEPETETSKDPW 581
            M+A+P  S  RSG +Q  N    G  SS LP + T  EE YPKL  +Q VS+ERELM+ P  LV    L YNN  VGH+FS   GFS +  +S  +P EKHS    FISQ +AN E  L+ Q +S  +                                      +Q T+S+ Y  EN  SWC + LP F+D+P  T   NN  E  + +  V  SE+    +D     DQL+ ++DALT+NW+    +    + E       P + I      H  ++ PL                           + + +      P+++   Q+  Q++         PS   ++Q +QV  QL            P  S++I       SS +S   K R+RWT E+HE FVEAVN LGG ERATPKGVLK MKVEGLTIYHVKSHLQKYRT RY+PES EGSS+K    +  +SS DLK   EITE L++QME+QK+LHEQLEIQ+NLQLR+EEQGR L+MMFEKQ +SG D   A S+       A + P T  +    I+ +P  ++ E   ++ G          P  E     W
Sbjct:   26 MEARPVFSIQRSGAKQLGNLGVSGALSSSLPLVPTPLEETYPKLPGSQQVSMERELMTRP--LVHASHLPYNNEVVGHLFSSSAGFSTDLQYSSVTPREKHSRNTPFISQSSANTEALLMSQSSSPAL--------------------------------------LQPTTSSHYINENSASWCPEPLPGFLDFPTNTTIQNNQIESNRCAG-VMASEEFGKRNDWQEWADQLITDDDALTTNWNELLADTSVADME-------PKVGI---FSQHTTNKIPL---------------------------EQLVKYSFMLSPVLISLLQMAYQVSK--------PSSNISVQHSQVHPQL------------PSPSAEIRPVLTPTSSANSAPTKPRMRWTPELHEAFVEAVNNLGGGERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIDEISSLDLKTGIEITEALQLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEKQCKSGIDVDKAASS-------ALENPST--LSSDAIQDTPAKIELETAQVDSGKTPIDTIYASPALEEGSQDW 514
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5NS58 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 298.13 bits (762), Expect = 5.559e-91
Identity = 229/619 (37.00%), Postives = 304/619 (49.11%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLV---PLSYNNGTVGHIFS---GFSKESHFSIASPHEKHSET--FISQ-TANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHNSCHQVPGVQSTSSTCYTKEND-SWCSDMLPEFIDYPM-TAEGNNYTEGGKVSSPVGLSEDCSMSSD---LLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQL---QVQQQPLVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHL----------------QKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQESGTDNPSAQSTV-----GIGNNHAQDGPKTTHMQHQVIRL--SPDDVDEELEVIEGGSEKFKDARTEPETETSKD 579
            M+A+P  S  RSG +Q  N    GV SS LP + T  EE  PKL  +Q VS+ERELM+ P  LV    L YNN  VGH+FS   GFS +  +S  +P EKHS    FISQ +AN  + L+ Q +S  +                                      +QST+S+ Y  EN  SWC + LP F+D+P  T   NN  E    +  V  SE+    +D     DQL+ ++DALT+NW+                      + DT       +  +  QH+  ++                    +QQL        P+++   Q+  Q++         PS    +Q +QV  QL            P  S++I       SS +S   K R+RWT E+HE FVEAVN LGGSERATPKGVLK MKVEGLTIYHVKSHL                QKYRT RY+PES EGSS+K    +  +SS DLK   EITE L++QME+QK+LHEQLEIQ+NLQLR+EEQGR L+MMFEKQ +SG D   A S+       + ++  QD P  T ++   +    +P D       +E GS+         +TET ++
Sbjct:   19 MEARPAFSIQRSGAKQLGNLGVSGVLSSSLPLVPTPLEETCPKLPGSQQVSMERELMTRP--LVHASHLPYNNEVVGHLFSSSAGFSTDLQYSSVTPREKHSRNTPFISQSSANTASLLMSQSSSPAL--------------------------------------LQSTTSSHYINENSASWCPEPLPGFLDFPTNTTIQNNQIESNSCAG-VMASEEFGKRNDWQEWADQLITDDDALTTNWNEL--------------------LADTSVADMEPKVGIFSQHTTNKI-------------------PLQQLVKYSFMLSPVLISLLQMAYQVSK--------PSSNIPVQHSQVHPQL------------PSPSAEIRPVLTPTSSANSAPTKPRMRWTPELHEAFVEAVNNLGGSERATPKGVLKLMKVEGLTIYHVKSHLQILIFVFNWRIFFVEFQKYRTARYRPESSEGSSEKRLTSIDEISSLDLKTGIEITEALQLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEKQCKSGIDVVKAASSALENPSTLSSDAIQDAPAKTELETAQVDCGKTPTDTIFASPALEEGSQDLNRKHKVSQTETPEN 537
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5IGS6 ((Protein PHR1-LIKE 1-like {ECO:0000313|EMBL:KAB2634484.1}))

HSP 1 Score: 284.263 bits (726), Expect = 2.281e-86
Identity = 201/524 (38.36%), Postives = 269/524 (51.34%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVP-LSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHNSCHQVPG-VQSTSSTCYTKEND-SWCSDMLPEFIDYPMTAEGNNYTEGGKVSSPVGLSEDCS--MSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQ-QP---LVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQESGTD 515
            M+A+P +S   S  +Q ++       SS LP L T  EE YPKL ++Q VS+ERELM+ P      L+ N+G VGH+FS                                    +S+G S +L +   SPHEK S+N  F SQ+S  +        G +QST S  Y KEN  SWC+D LP F+ +P+    N++ E  ++      S  C+  M++D   + +  +D     W  + +   T+              DD +                        S   E+    + +D  Q+++ Q  QP       +SQ+H+Q   +S EI   PS                       R+I      IS+     SS +S   K+R+RWT E+HE FVEAVN+LGGSERATPKGVLK MKVEGLTIYHVKSHLQKYRT RY PES EG+S+K    +  M+S DLK   EITE LR+QME+QK+LHEQLEIQ+NLQLR+EEQG+ L+MMFEKQ +SG D
Sbjct:    1 MEARPAMSIRTSAAKQLTHMGVSAAMSSSLPVLPTSLEETYPKLPDSQQVSMERELMTRPVGHAGHLTSNSGVVGHLFS------------------------------------SSSGFSTDLHYSALSPHEKQSKNSPFISQSSAALPLPHSPHSGFLQSTESCPYPKENSGSWCTDSLPGFLHFPV----NSHVENSQIE-----SSSCTGIMTAD---EFVKRHD-----WQDWADQLITD--------------DDALT-----------------------SNWNELLDDNNVTDLEQKMKYQAPQPSSTFSAEQSQVHQQQPASSGEIIPAPS-----------------------REI------ISVPAT--SSANSAPAKARMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYIPESSEGASEKKLTSIEEMTSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGID 403
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540LBA5 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 275.018 bits (702), Expect = 7.182e-83
Identity = 200/524 (38.17%), Postives = 266/524 (50.76%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVP-LSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHNSCHQVPG-VQSTSSTCYTKEND-SWCSDMLPEFIDYPMTAEGNNYTEGGKVSSPVGLSEDCS--MSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQ-QP---LVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQESGTD 515
            M+A+P +S   S  +Q ++       SS LP L T  EE YPKL ++Q VS ERELM+ P      L+ N+G VGHIFS                                    +S+G S +L +   SPHEK S+N  F SQ+S  +        G +QST S  Y K+N  SWC+D LP F+ +P+    N++ E  ++ S       CS  M++D   + +  +     NW  + +   T+              DD +                        S   E+    S +D  Q+++ Q  QP       +SQ+H+Q   +S EI   PS                       R+I      IS+     SS +S   K+R+RWT E+HE FVEAVN+LGG   ATPKGVLK MKVEGLTIYHVKSHLQKYRT RY+PES EG+S+K    +  M+S DLK   EITE LR+QME+QK+LHEQLEIQ+NLQLR+EEQG+ L+MMFEKQ +SG D
Sbjct:    1 MEARPAMSIRTSAAKQLTHMGVSAAMSSSLPVLPTSLEETYPKLPDSQQVSRERELMTRPVGHAGHLTSNSGVVGHIFS------------------------------------SSSGFSTDLHYSALSPHEKQSKNSPFISQSSAALPLPHSPHSGFLQSTESCPYPKKNSGSWCTDSLPGFLHFPV----NSHVENSQIES-----SSCSGIMAAD---EFVKRH-----NWQDWADQLITD--------------DDALT-----------------------SNWNELLDDNSVTDLEQKMKYQAPQPSSTFSAEQSQVHQQQPASSGEIIPAPS-----------------------REI------ISVPAT--SSANSAPAKARMRWTPELHEAFVEAVNQLGG---ATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGASEKKLTSIEEMTSLDLKTGIEITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGID 400
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498IV60 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 279.641 bits (714), Expect = 5.068e-79
Identity = 208/540 (38.52%), Postives = 276/540 (51.11%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVP-LSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVH--NSCHQVPGVQSTSSTCYTKEND-SWCSDMLPEFIDYPMTAEGNNYTEGGKVSSPVGLSEDCS--MSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQ-QP---LVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQESGT----------DNPSAQ 520
            M+A+P +S   S  +Q ++       SS LP L T  EE YPKL ++Q VS ERELM+ P      L+ N+G VGHIFS                                    +S+G S +L +   SPHEK S+N  F SQ+S  +   +S H    +QST S  Y KEN  SWC+D LP F+ +P+    N++ E  ++ S       CS  M++D   + +  +D     W  + +   T+              DD +                        S   E+    S +D  Q+++ Q  QP       +SQ+H+Q   +S EI   PS                       R+I      IS+     SS +S   K+R+RWT E+HE FVEAVN+LGGSERATPKGVLK MKVEGLTIYHVKSHLQKYRT RY+PES EG+S+K    +  M+S DLK   EITE LR+QME+QK+LHEQLEIQ+NLQLR+EEQG+ L++MFEKQ +SG           D+PSAQ
Sbjct:  269 MEARPAMSIRTSAAKQLTHMGVSAAMSSSLPVLPTSLEETYPKLPDSQQVSRERELMTRPVGHAGHLTSNSGVVGHIFS------------------------------------SSSGFSTDLHYSALSPHEKQSKNSPFISQSSAALPLPHSPHS-GFLQSTESCPYPKENSGSWCTDSLPGFLHFPV----NSHVENSQIES-----SSCSGIMAAD---EFVKRHD-----WQDWADQLITD--------------DDALT-----------------------SNWNELLDDNSVTDLEQKMKYQAPQPSSTFSAEQSQVHQQQPASSGEIIPAPS-----------------------REI------ISVPAT--SSANSAPAKARMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGASEKKLTSIEEMTSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQIMFEKQCKSGIDTLKRSSSNLDDPSAQ 686
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7GPJ7 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 263.077 bits (671), Expect = 1.620e-78
Identity = 197/517 (38.10%), Postives = 268/517 (51.84%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVPLSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQ-----TSVIVHNSCHQVPGV-QSTSSTCYTKEN-DSWCSDMLPEFIDYPMTAEGNNYTEGGKVSSPVGLSE-DCSMSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQQPLVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQ 509
            M+A+P LS  R+G  Q SN  + G  SS LP L T  EEKYPKL  + L S        PS       N+G VGH+FS           SP E                          S NL F +  P++++    +F SQ      S+ + NS     GV Q  +S+ Y   N +SWC+++LP+++DY              V++PV  ++ DC  S D   Q+   + +  S+W  + +   ++ +      +   SI D         +P +    Q Q+  NFP                           +H+ Q  +Q+  AS E  T+  +  +++ + V               +P AS + S      S+ S +S+K R+RWT E+HE FVEAVNKLGGSERATPKGVLK MKVEGLTIYHVKSHLQKYRT RYKPE+ EGSS+K ++ +G +S+ DLK   EITE LR+QME+QK+LHEQLEIQ+NLQLR+EEQGRCL+MMFEKQ
Sbjct:    1 MEARPALSVQRTGAHQLSNFGASGAHSS-LPVLQTSLEEKYPKLPGSALSSF-------PS-------NSGAVGHLFS-----------SPSE-------------------------FSTNLDFSSVLPYDEHLAPATFISQPTINEASIPLANS-----GVLQGAASSQYVNVNSESWCTELLPDYLDY-------------SVNAPVQNTQLDCRNSDDC--QIPPEDPSKQSDWPEWADLVMSDDDALTSSWMVDTSIADA--------EPKMQYQEQNQL-SNFP---------------------------VHQVQPFQQIPTASVE--TSAVVPASVETSAV---------------VP-ASVETSAVVPASSTGSGSSSKQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEASEGSSEKKESSIGDLSALDLKTGIEITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGRCLQMMFEKQ 392
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2B435 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 257.684 bits (657), Expect = 1.291e-76
Identity = 194/519 (37.38%), Postives = 261/519 (50.29%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVPLSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQ-----TSVIVHNSCHQVPGV-QSTSSTCYTKEN-DSWCSDMLPEFIDYPMTAEGNNYTEGGKVSSPVGLSE-DCSMSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQQP--LVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQ 509
            M+A+P LS  R+   Q SN  + G  SS LP L T  EEKYPKL    L S        PS       N+G VGH+FS           SP E                          S NL F +  P++++    +F SQ      S+ + NS     GV Q  +S+ Y   N +SWC+++LP+++DY              V++PV  ++ DC  S D   Q+   + +  S+W  + +   ++              DD +                        ++S  + T+ + ++   Q Q Q QP    +H+ Q  +Q+  AS E                               +P AS + S      S+ S +S+K R+RWT E+HE FVEAVNKLGGSERATPKGVLK MKVEGLTIYHVKSHLQKYRT RYKPE+ EGSS+K ++ +G +S+ DLK   EITE LR+QME+QK+LHEQLEIQ+NLQLR+EEQGRCL+MMFEKQ
Sbjct:    1 MEARPALSVQRTAAHQLSNFGASGAHSS-LPVLQTSLEEKYPKLPGAALSSF-------PS-------NSGAVGHLFS-----------SPSE-------------------------FSTNLDFSSVLPYDEHLAPATFISQPTTNEASIPLANS-----GVFQGAASSQYVNVNSESWCTELLPDYLDY-------------SVNAPVQNTQLDCRNSGDC--QIPPEDPSKQSDWPEWADLVMSD--------------DDAL------------------------TSSWMVDTSIADAEPKMQYQEQNQPSNFPVHQVQPFQQIPTASVETSAV---------------------------VP-ASVETSAVVPASSTGSGSSSKQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEASEGSSEKKESSIGDLSALDLKTGIEITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGRCLQMMFEKQ 382
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7MN52 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 254.603 bits (649), Expect = 5.242e-75
Identity = 209/546 (38.28%), Postives = 263/546 (48.17%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSS--PSDLVPLSYNNGTVGHIF---SGFSKESHFS--IASPHEKHSET--FISQTANAETSL-LVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHNSCHQVPGVQSTSSTCYTKENDS-WCSDMLPEFIDYPMTAEGNNYTEGGKVSSPVGLSEDCSMSSDLLDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQQPLVLHKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQESGTD--------NPSAQSTVGIGN 527
            M A   LS  RSG    SN    G  SS LP L    EE YPK  ++  VS ERE M +  PS     + NNG VGHIF   SG S   H+S    SPHEK S    FISQ++N E+   L+                SPH     +G F  ++S + H               C  + ND  WC D  P  +D+  T   N   E                S +  + L+ +N++L  +W    NN   N+                   H   QQ  ++Q  +P        +S   C TQ    T QQ  VQ                                  +  Q  +Q+ QQ   Q      S +I    + +SS + +SNK R+RWT E+HE FVEAVN+LGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRT RY+PES EG+S+K       ++S D K   EITE LR+QME+QK+LHEQLEIQ+NLQLR+EEQGR L+MMFEKQ ++  D        +PSA S+  I N
Sbjct:    1 MKAHTALSIQRSGTTHLSNIGVSGAMSSSLPVLPITLEENYPKCSDSHQVSFEREPMKNRVPSQATLTTSNNGAVGHIFSSASGISSNLHYSSISPSPHEKISRNAPFISQSSNNESCYPLIH---------------SPH-----SGLF--KSSALSH---------------CTQENNDDPWCLD--PLLLDFSETVVSNGQMEISDAGELGSEGHTKQTSWEWTEHLITDNNSL--DW----NNLLVNT-----------------NEHDPEQQKTIYQLPKPL-------SSFSGCQTQ----THQQHPVQ----------------------------------STQQHPVQSTQQHPTQ------SGEIGAVTSPMSSANGSSNKQRMRWTPELHELFVEAVNQLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTARYRPESSEGTSEKRATSTEDITSLDPKMGIEITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGRNLQMMFEKQYKNSNDKSMFSIPCDPSAPSSDIIHN 433
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445EGN4 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 249.98 bits (637), Expect = 5.369e-73
Identity = 207/603 (34.33%), Postives = 279/603 (46.27%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVPLSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHN----SCHQVPGVQSTSSTCYTKEND-SWCSDMLPEFIDYPMTAEGNNYTEGGKVSS---PVGLSEDCSMSSDL---LDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQQPLVL--HKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQE----------SGTDNPSAQSTVGIGNNHAQDGPKTTHMQHQVIRLSPDDVDEELEVIEGGSEKFKDARTEPETETSKDP 580
            M+A+P +S  RS   + +     G  SS L  L T  EE Y KL ++ L  VE  LMS P        NNG VGHIFS                                    +S G S  L   + SPHEK+S N    S +S  +      S +  P + S  S+ +  EN  SW +D +P F+D+P     N   + G+V S    +  SE+    +D     DQL++++D LTSN +    +   + E +    +  I+I                   + Q+   F    +E              QV +  L L  H S+ H+QL  +SEE C                                            SS  S  +K R+RWT E+HE FV+AVN+LGGSERATPKGVLK MKVEGLTIYHVKSHLQKYRT RY+P+S EG S+K  + +  M+S DL+   +ITE LR+QM +QK+LHEQLEIQ+NLQLR+EEQGR L+MMFEKQ +          S  +NPS  S   +     QD P  +       +  PD      +V+EG  E        P+T+ S++P
Sbjct:   17 MEARPSISIERSSAEKHNVMGMSGALSSSLAVLPTPLEETYNKLPDSPLAFVEEGLMSGPLTHSGHLNNNGAVGHIFS------------------------------------SSPGYSTALHHSSLSPHEKHSRNAHIISHSSTNMATLPPFSSNSGP-LPSKPSSHFPNENSASWHTDSVPSFLDFP----ANTSIDSGRVESGACTIMASEEYCKQNDWQEWADQLISDDDTLTSNLNDLLADNVPDPEPKVKLFITEINIS----------------FQRKQISNLFKECLRE------------PFQVSKPSLQLPGHPSEGHQQLPASSEENCAG--------------------------------------AAPSSSAKSAPSKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGVSEKKTSSIEEMASLDLRTGIDITEALRLQMVVQKQLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPETEMFKASLSTAENPSGSSLDAM-----QDVPAKSASMVDNYKPGPDQAIGSTKVVEGSVE-IGGKHDSPKTQLSENP 506
[Close]
BLAST of DCAR_000583 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445EGN8 (HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294})

HSP 1 Score: 249.595 bits (636), Expect = 5.434e-73
Identity = 207/603 (34.33%), Postives = 279/603 (46.27%), Query Frame = 0
 
Query:    1 MDAQPFLSFHRSGGRQSSNHESIGVPSSCLPSLATVQEEKYPKLLNNQLVSVERELMSSPSDLVPLSYNNGTVGHIFSGFSKESHFSIASPHEKHSETFISQTANAETSLLVQDTSAGISENLQFCNASPHEKYSENGSFFSQTSVIVHN----SCHQVPGVQSTSSTCYTKEND-SWCSDMLPEFIDYPMTAEGNNYTEGGKVSS---PVGLSEDCSMSSDL---LDQLLNNNDALTSNWDHFENNCFTNSELQFPYHVPAISIDDTVQMHQVHQQPLVHQHSQPQVYENFPSASKEICTTQSTSDTVQQLQVQQQPLVL--HKSQIHEQLAHASEEICTTPSMGCTLQLAQVQQQLQAFQQSQVQRQIPLASSKISMSGNQLSSTSSTSNKSRIRWTSEMHETFVEAVNKLGGSERATPKGVLKQMKVEGLTIYHVKSHLQKYRTTRYKPESLEGSSDKNQNLLGVMSSHDLKKDSEITETLRMQMELQKKLHEQLEIQKNLQLRLEEQGRCLKMMFEKQQE----------SGTDNPSAQSTVGIGNNHAQDGPKTTHMQHQVIRLSPDDVDEELEVIEGGSEKFKDARTEPETETSKDP 580
            M+A+P +S  RS   + +     G  SS L  L T  EE Y KL ++ L  VE  LMS P        NNG VGHIFS                                    +S G S  L   + SPHEK+S N    S +S  +      S +  P + S  S+ +  EN  SW +D +P F+D+P     N   + G+V S    +  SE+    +D     DQL++++D LTSN +    +   + E +    +  I+I                   + Q+   F    +E              QV +  L L  H S+ H+QL  +SEE C                                            SS  S  +K R+RWT E+HE FV+AVN+LGGSERATPKGVLK MKVEGLTIYHVKSHLQKYRT RY+P+S EG S+K  + +  M+S DL+   +ITE LR+QM +QK+LHEQLEIQ+NLQLR+EEQGR L+MMFEKQ +          S  +NPS  S   +     QD P  +       +  PD      +V+EG  E        P+T+ S++P
Sbjct:    1 MEARPSISIERSSAEKHNVMGMSGALSSSLAVLPTPLEETYNKLPDSPLAFVEEGLMSGPLTHSGHLNNNGAVGHIFS------------------------------------SSPGYSTALHHSSLSPHEKHSRNAHIISHSSTNMATLPPFSSNSGP-LPSKPSSHFPNENSASWHTDSVPSFLDFP----ANTSIDSGRVESGACTIMASEEYCKQNDWQEWADQLISDDDTLTSNLNDLLADNVPDPEPKVKLFITEINIS----------------FQRKQISNLFKECLRE------------PFQVSKPSLQLPGHPSEGHQQLPASSEENCAG--------------------------------------AAPSSSAKSAPSKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGVSEKKTSSIEEMASLDLRTGIDITEALRLQMVVQKQLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPETEMFKASLSTAENPSGSSLDAM-----QDVPAKSASMVDNYKPGPDQAIGSTKVVEGSVE-IGGKHDSPKTQLSENP 490
Match NameStatsDescription
A0A835N928E-Value: 3.654e-96, PID: 37.75(Uncharacterized protein {ECO:0000313|EMBL:KAF9688... [more]
A0A5N5NS58E-Value: 5.559e-91, PID: 37.00HTH myb-type domain-containing protein {ECO:000025... [more]
A0A5N5IGS6E-Value: 2.281e-86, PID: 38.36(Protein PHR1-LIKE 1-like {ECO:0000313|EMBL:KAB263... [more]
A0A540LBA5E-Value: 7.182e-83, PID: 38.17HTH myb-type domain-containing protein {ECO:000025... [more]
A0A498IV60E-Value: 5.068e-79, PID: 38.52HTH myb-type domain-containing protein {ECO:000025... [more]
A0A3Q7GPJ7E-Value: 1.620e-78, PID: 38.10HTH myb-type domain-containing protein {ECO:000025... [more]
A0A6N2B435E-Value: 1.291e-76, PID: 37.38HTH myb-type domain-containing protein {ECO:000025... [more]
A0A7J7MN52E-Value: 5.242e-75, PID: 38.28HTH myb-type domain-containing protein {ECO:000025... [more]
A0A445EGN4E-Value: 5.369e-73, PID: 34.33HTH myb-type domain-containing protein {ECO:000025... [more]
A0A445EGN8E-Value: 5.434e-73, PID: 34.33HTH myb-type domain-containing protein {ECO:000025... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.