DCAR_004664

Resource Type: 
Polypeptide
Name: 
DCAR_004664
Identifier: 
DCAR_004664.mRNA-protein
Sequence: 
MVKKENEGVIVKKEIDFVSSSSISDSSCDTGYKRNKVAKRSSQAGWTEEE
DNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKK
EEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAW
SEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLD
LNLPLQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDM
CSTDLTLGNAYTCESWLGSKSSRSQKYPEQEAVNQPLSRVQFRGNSSINN
GKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSG
GMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKL
CNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGS
SQYSNYIGKGNTVLQTPKLDAKHYGSFSDGPPYVKDIVAPVRTGEYSSVD
DITKANSQSFCSTPSLAQSIVCTSSPESILRNSAMKYEHTPSIIRKSRPK
EGGSCSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLER
RLEYAFDREWDPLAVRCSTPVSAPSEAVLGARLQA*
Sequence Length: 
636
Sequence Checksum: 
deb1b13f97655c947a0e4e6be3360e4c
View location in JBrowse: 
DCARv2_Chr1:50187034..50191406+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_004664, derives from mRNA, DCAR_004664.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G8F2 ((Myb domain protein 3r-5 {ECO:0000313|EMBL:GFZ07059.1}))

HSP 1 Score: 414.846 bits (1065), Expect = 2.136e-134
Identity = 272/614 (44.30%), Postives = 346/614 (56.35%), Query Frame = 0
 
Query:   38 AKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNLP------LQSPLSDDL-SSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDMCSTDLTLGNAYTCESWLGSK-SSRSQKYPEQEAVNQPLSRVQFRGNSSINNGKMDLPWKR-NFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNL-TPGSSQYSNYIGKGNTVLQTPKLDAKHYGSFSDGPPYVKDIVAPVRTGEY--SSVDDITKANSQSFCSTP-SLAQSIVCTS-SPESILRNSAMKYEHTPSIIRKSRPKEGGSC--------SPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVL 629
             +RSSQAGWTEEEDN L++VVKK+NGRNWKKIA  +PGRTDVQCLHRWQKVLNPEL KGPW KEEDDRII+LV+KYG +KWS IAK+LPGRIGKQCRERWHNHLDPAIKKEAW++ EE++L++YH+IYGNKWAEIAKFLPGRTDNAIKNHWNCS KKKLD   LNLP      +Q P S D   SE    SV+    +  + +A  ++ I        + CST+L LGNAY+  + L SK S R  +   +  V++ +S                 P +R  F  ++ +A  L+S                 +G  +P   G + AS     + D + FN+    I S  P        +DV  P                  T  K  E+ +R R+ G   + L       NS L+L T G S+ S  + K N V QTP  D K+YG     PP +KD + P    E   ++ +D+    SQ  CS P +LA S+  +S SPES+LRNSA  Y++TPSIIRK   ++ GS         +  H IS T E+ + N                RS  S+  + +ERRL+  FD EWD  AVRC TPVSA +   L
Sbjct:  109 TRRSSQAGWTEEEDNLLSEVVKKYNGRNWKKIAACIPGRTDVQCLHRWQKVLNPELVKGPWTKEEDDRIIELVEKYGCKKWSFIAKFLPGRIGKQCRERWHNHLDPAIKKEAWTKEEESVLTHYHRIYGNKWAEIAKFLPGRTDNAIKNHWNCSVKKKLD---LNLPSTSMLDMQGPSSPDFYGSETKPPSVEAKVARYDLREA--SFDIRSSKVHAIETCSTELVLGNAYSRGTCLESKLSIRGTRRSSEAGVDKLIS-----------------PLRRIQFRGTDTMACGLTSEPY--------------RGNCYPDRHGHLKAS-----SSDDS-FNASGLVISSFSP--------LDVVLP-----------------ITSIKAFESPKRHRNCGLGGMKLESGSSSDNSFLSLSTGGFSEDSGQVCKKNRVHQTPNPDDKNYGFLCYKPPQLKDFLIPEENDEGCPNADNDLKHGKSQLCCSPPPNLALSMSISSISPESMLRNSARSYKNTPSIIRKRTSRDSGSSNNYSDRNKTSEHMISRTSEAESMNI---------------RSETSIVDRSVERRLQGEFDNEWDTTAVRCRTPVSAATSPSL 640
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GFV3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132817.1}))

HSP 1 Score: 411.764 bits (1057), Expect = 8.676e-134
Identity = 281/660 (42.58%), Postives = 355/660 (53.79%), Query Frame = 0
 
Query:    2 VKKENEGVI-VKKEIDFVSS-SSISDSSCDTGYKRN----------KVAKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNLP------LQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSD--MCSTDLTLGNAYTCESWLGSKSSRSQKYPEQEAVNQPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRS--DGSNIINLRRECVQGNSLLNL-TPGSSQYSNYIGKGNTVLQTPKL-DAKHYGSFSDGPPYVKDIVAPVR-TGEYSSVDD-ITKANSQSFCST-PSLAQSI-VCTSSPESILRNSAMKYEHTPSIIRKSRPKEGGSCSPVHK----ISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVL 629
            VK+E E ++ VKKE+ F ++  S+SDSSCDT   R+           V +RSSQAGWTEEEDN L++VV+K+NGRNWKKIAE +PGRTDVQCLHRWQKVLNPEL KGPW KEED+ II LV+KYG +KWS IAK L GRIGKQCRERWHNHLDPAIKKEAW+  EEAIL+YYHQIYGNKWAE+A+FLPGRTDNAIKNHWNCS KKK    DLNLP      +Q   S D  S    E+  +    +     +S   +     KV D   CST+L LGNA    + L      +           P SR+QF G  +   G                         +T E   G +   P G+  PL +           +     FNS   +             S++ + P                 FT  K  E+ +R RS   G  + NL    +  NS L+L T G ++  + + K N +   P   D K+YG  S   P +KD V P +  G + SVD  ++  NS   CST P L  S+ V +S P S+LRNSAM Y++TPSIIRK   ++  S +   +      M   +R  + +++  D     S  HRS  SV  + LERRLE  FD+EWD  AVRC TPVS    + L
Sbjct:    4 VKEEEECIVDVKKEVGFAAAWFSVSDSSCDTYTPRSPSARSHRRITGVTRRSSQAGWTEEEDNLLSEVVEKYNGRNWKKIAECIPGRTDVQCLHRWQKVLNPELVKGPWTKEEDEHIIYLVEKYGCKKWSVIAKCLHGRIGKQCRERWHNHLDPAIKKEAWTIEEEAILTYYHQIYGNKWAELARFLPGRTDNAIKNHWNCSVKKK---FDLNLPPSPVLDMQGTASPDFCSS---ETKSVGTDDILARHGLSDESLDCRRAKVHDHETCSTELVLGNAKLIVNPLELNPYSAGVEAGGNKQKSPSSRIQFSGTYTGARG-------------------------LTSEPCQGDS---PLGIHDPLKASS--------HDDFFHAFNSTKYAF-----------NSLNADLP-----------------FTSEKTFESSKRHRSCGRGLGVANLESGSLSENSCLSLSTFGINEPYDQVYKKNRIHAIPHHSDDKYYGYLSYKSPQLKDFVTPKKNVGGWLSVDSYLSHDNSHVCCSTPPDLELSMSVNSSCPGSMLRNSAMSYKNTPSIIRKRSSRKAVSSNYSDRNYTSARMISCTREVDFMNVKQDGAVCLS--HRSEASVVDRSLERRLECEFDKEWDSAAVRCCTPVSTTGASGL 591
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L078 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9450902.1}) (Fragment))

HSP 1 Score: 410.609 bits (1054), Expect = 2.596e-133
Identity = 280/653 (42.88%), Postives = 350/653 (53.60%), Query Frame = 0
 
Query:    2 VKKENEGVI-VKKEIDFVSS-SSISDSSCDT---------GYKR-NKVAKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNLPLQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGP---VRKV----SDMCSTDLTLGNAYTCESWLGSKSSRSQKYPEQEAVNQPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEA-SGGKTNLAPQGVLHPLTSGGMFASCKRPRNG--DVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGSSQYSNYIGKGNTVLQTP-KLDAKHYGSFSDGPPYVKDIVAPVR-TGEYSSVDD-ITKANSQSFCST-PSLAQSI-VCTSSPESILRNSAMKYEHTPSIIRKSRPKEGGSCSPVHK----ISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSA 623
            VK+E E ++ VKKE+ F ++ SS+SDSSCDT         G++R   V +RSSQAGWTEEEDN L++VV+K+NGRNWKKIAE +PGRTDVQCLHRWQKVLNPEL KGPW KEED+ II LV+KYG +KWS IAK+L GRIGKQCRERWHNHLDPAIKKEAW+  EEAIL+YYHQIYGNKWAE+A+FLPGRTDNAIKNHWNCS KKK    DLNLP    L  D+   A+ +        +G    ++ + ++      R+     S+ CST+L LGNA    + L      +           P SR+QF G  +   G    P + N     +     +SS  +   A    K    P     P TS   F S KR R+    + + N E  S LS+   +S S   I             N PY  V+                                                 K N V   P   D K+YG  S  PP +KD V P    G + SVD  ++  NS   CST P L  S+ V +S P S+LRNSAM Y++TPSIIRK   ++  S +   +      M   +R  + +++  D     S  HRS  SV  + LERRLE  FD+EWD  AVRC TPVS 
Sbjct:    4 VKEEEECIVDVKKEVGFAAAWSSVSDSSCDTYTPRSLSARGHRRITGVTRRSSQAGWTEEEDNLLSEVVEKYNGRNWKKIAECIPGRTDVQCLHRWQKVLNPELVKGPWTKEEDEHIIYLVEKYGCKKWSVIAKFLHGRIGKQCRERWHNHLDPAIKKEAWTIEEEAILNYYHQIYGNKWAELARFLPGRTDNAIKNHWNCSVKKK---FDLNLPPSPVL--DMQGTASPDFCSSETKSVGTDDKLARHGLSEESLDCRRAKVHDSETCSTELVLGNAKLIVNPLELNPYSAGVEAGGNKQISPSSRIQFSGTHTGARGLTSEPCQGNRSPLGIHDPLKASSHDVFFHAFDSTKYTFNPLNADLPFTSEKTFESSKRHRSCGRGLGVANLESGS-LSENSCLSLSTFGI-------------NEPYDQVY-------------------------------------------------KKNRVHAIPYHSDDKYYGYLSYKPPQLKDFVTPKENVGGWLSVDSYLSHDNSHVCCSTPPDLELSMSVNSSCPGSMLRNSAMSYKNTPSIIRKRSSRKAVSSNYSDRNYTSARMISCAREVDFMNVKQDGAVCPS--HRSEASVLDRSLERRLECEFDKEWDSAAVRCCTPVST 586
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q8C1 ((Myb-related protein like {ECO:0000313|EMBL:PSS04146.1}))

HSP 1 Score: 407.912 bits (1047), Expect = 1.231e-131
Identity = 270/614 (43.97%), Postives = 341/614 (55.54%), Query Frame = 0
 
Query:   38 AKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNLP------LQSPLSDDL-SSEANLESVKIPAVQLGVGKAMSTYQI-AGPVRKVSDMCSTDLTLGNAYTCESWLGSKSSRSQKYPEQEAVNQPLSRVQFRGNSSINNGKMDLPWKR-NFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNL-TPGSSQYSNYIGKGNTVLQTPKLDAKHYGSFSDGPPYVKDIVAPVRTGEY--SSVDDITKANSQSFCSTP-SLAQSIVCTS-SPESILRNSAMKYEHTPSIIRKSRPKEGGSC--------SPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVL 629
             +RSSQAGWTEEEDN L+ +VKK+NGRNWKKIA  +PGRTDVQCLHRWQKVLNPEL KGPW KEEDDRII+LV+KYG +KWS IAK+LPGRIGKQCRERWHNHLDPAIKKEAW++ EE++L++YH+IYGNKWAEIAKFLPGRTDNAIKNHWNCS KKKLD   LNLP      +Q P S D   SE    SV+    +  + +A  ++ I +G V  + + CST+L LGNA                Y     +   LS    R +S     K+  P +R  F  ++ +   L+S                 +G  +P   G + AS     + D + FN+    I S  P        +DV  P                  T  K  E+ +R R+ G   + L       NS L+L T G S+ S  + K N V QTP  D K+YG     PP +KD + P    E   ++ +D+    SQ  CS P +LA S+   S SPES+LRNSA  Y++TPSIIRK   ++ GS         +  H IS T E+ + N                RS  S+  + +ERRL+  FD EWD  AVRC TPVSA +   L
Sbjct:  111 TRRSSQAGWTEEEDNLLSKIVKKYNGRNWKKIAACIPGRTDVQCLHRWQKVLNPELVKGPWTKEEDDRIIELVEKYGCKKWSCIAKFLPGRIGKQCRERWHNHLDPAIKKEAWTKEEESVLTHYHRIYGNKWAEIAKFLPGRTDNAIKNHWNCSVKKKLD---LNLPSTSMLDMQGPSSPDFYGSETKPPSVEAKVARYDLREA--SFDIRSGKVHAI-ETCSTELVLGNA----------------YSHGTCLESKLSIRGTRRSSEAGVDKLISPLRRIQFRGTDAMTRGLTSEPY--------------RGNCYPDRHGHLKAS-----SSDDS-FNASGLVISSFNP--------LDVVLP-----------------ITSIKAFESPKRHRNCGLGGMKLESGSSSDNSFLSLSTGGFSEDSGQVCKKNRVHQTPNPDDKNYGFLCYKPPQLKDFLIPEENDEGCPNADNDLKHGKSQLCCSPPPNLALSMSINSISPESMLRNSARSYKNTPSIIRKRTSRDSGSSNNYPDRNKTSEHMISRTSEAESMNI---------------RSETSIVDRSVERRLQGEFDNEWDTTAVRCRTPVSAATSPSL 642
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D3M5 ((Uncharacterized protein {ECO:0000313|EMBL:THF96909.1}))

HSP 1 Score: 407.527 bits (1046), Expect = 2.412e-131
Identity = 275/666 (41.29%), Postives = 354/666 (53.15%), Query Frame = 0
 
Query:    2 VKKENEGVI-VKKEIDFVSSSSISDSSCDTGYKRN----------------KVAKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNLPLQSPLSDDLSSEANLESVKIPAV--QLGVGKAMST---YQIAGPVRKVSDMCSTDLTLGNAYTCESWLGSKSSRSQKYPEQEA----VNQPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNL-TPGSSQYSNYIGKGNTVLQTPKLDAKHYGSFSDGPPYVKDIVAPVRTG-EYSSVDD-ITKANSQ-SFCSTPSLAQSI-VCTSSPESILRNSAMKYEHTPSIIRKSRPKEGGS-------CSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVL 629
            VKKE E V+ + KE+   + S +SDSS DT  +R+                   +RSSQAGWTEEEDN L++ VKK+NGRNWKKIAE L GRTDVQCLHRWQK              EDD II+LV+KYG +KWS IAK+LPGRIGKQCRERWHNHLDPA+KKEAW++ EEAIL+ YH+IYGN+WAE+A+FLPGRTDNAIKNHWNCS KKK D   LNLP  S  S  L++  +  S +  +V  ++ V +   T     ++     V D CST+L LGNA   E+ L S  S        EA    +  PL R+QF G +                           +S +T E S G  +   +G     +S  +  +                          SCS  S                P  +V   T  K  E+ +R R    +++NL    +  NS L L T G  +++ ++ K + V +T  LD KH+G     PP +KD V P   G    SV++ + +ANSQ  F + P LA SI   +SSPES+LRNSAM Y++TPSIIRK   +E GS       C+P   IS T E+      D ++ K   HS  HR  +SVA K  ERRLE  FD+EWD    RC TPVS  + + L
Sbjct:    4 VKKEEEYVMDLTKEVGLSTFSPVSDSSGDTFTQRSPSSQAADWTLFFSLRKTTIRRSSQAGWTEEEDNLLSEYVKKYNGRNWKKIAECLSGRTDVQCLHRWQK--------------EDDCIIELVEKYGCKKWSVIAKFLPGRIGKQCRERWHNHLDPAVKKEAWTKEEEAILTCYHKIYGNRWAELARFLPGRTDNAIKNHWNCSVKKKWD---LNLP-PSLYSQFLAASPDFCSTETKSVCAEVTVDRHNLTEVSVDLSRGKEHVGDACSTELVLGNANLGENRLESNPSMLGACRFSEAGLNKLISPLRRIQFNGTAI--------------------------ASRLTNEPSQGNDHHDIRGTFQASSSDDLVVA--------------------------SCSTKS-------------SFTPLDVVLPVTTEKTFESPKRQRGRDLDVVNLESRSLLDNSFLCLSTFGVREHNGHVSKKSRVDETHHLDDKHFGCLCYKPPQLKDFVIPDENGGRCPSVENHVRRANSQVHFSTPPDLALSISFNSSSPESMLRNSAMSYKNTPSIIRKRASREAGSGNYSVRNCTPARMISCTSEA------DFVNVKQDAHSPFHRPKISVADKSRERRLECEFDKEWDSAVARCCTPVSTSASSGL 580
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZVH3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8521131.1}))

HSP 1 Score: 391.734 bits (1005), Expect = 5.755e-126
Identity = 274/666 (41.14%), Postives = 355/666 (53.30%), Query Frame = 0
 
Query:    3 KKENEGVIVKKEIDFVSSSSISDSSCDTGYKR----------NKVAKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNLP----LQSPLSDD-LSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDMCSTDLTLGNAYTCESWLGSK-----SSRSQKYPEQEAVNQPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRN-----GDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGSSQYSNYIGKGNTVLQTPKLDAKHYGSFSDGPPYVKDIVAPVRTGEYSSVDDITKANSQSFCSTPSLAQSIVCTSSPESILRNSAMKYEHTPSIIRKSRPKEGG-------SCSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVS--APSEAVLGARLQ 634
            K+E+  V + KE+ F + S+ SDSSCDT   R              KRSSQAGWTEEEDN L +VV+KFNGRNWKKIAE +PGRTDVQCLHRWQKVLNPEL KGPW KEEDD I++LV+KYG +KWS IAK LPGRIGKQCRERWHNHLDPAIKK+AW++ EE+IL+YYH+IYGNKWAE+A+ LPGRTDNAIKNHWNCS +KKL++  L       LQS  S D  S E     +++   +  VG+++S  Q  G   + +D CSTDL LGNA+  E    SK     +SRS +    + +N PL+ +Q     +I +G +  P + N + + +     +SSS  +  ASG      P  V+ P+TS  M  S KR         D+ I +S   S LS   + +C  G    E   Q+ KK      K+  H TP         P       +      V+   L     G S+  N++   N+              FS  P     I         SS + + + ++ S+ +TPS+                           IRK   +E G       +C+P H  S T +    +  DLM+ K  L S +HRS  SV+ K L RRLEYAFD EWDP  VR   PVS  A S+A   A + 
Sbjct:    6 KEEDYTVDLTKEVGFTTCSA-SDSSCDTVIPRYPSVHCCRRTTGPIKRSSQAGWTEEEDNLLTEVVRKFNGRNWKKIAEIIPGRTDVQCLHRWQKVLNPELVKGPWTKEEDDHILKLVEKYGCKKWSVIAKSLPGRIGKQCRERWHNHLDPAIKKDAWTKEEESILTYYHKIYGNKWAELARLLPGRTDNAIKNHWNCSVRKKLESNLLRTSARDILQSSTSPDFFSCEVKAGCMEVTLGRQSVGESVSLDQKRG--LEYADPCSTDLVLGNAHLGEKCSESKPFMLGTSRSLEVGVNDLIN-PLTGIQVERMETITSGVIVEPCRGNANLAGIHKPLKASSSVDSSYASGSTKTHIPLEVVVPVTSKRMLESPKRSTGSGLCVNDLRIGSSSDNSFLS---FSACEFG----EENGQVGKK-----NKI--HGTP--------HPDDQNYGCLCYEPPQVKDLDLPMENAGCSRVDNHLRHANSSF-----------CFSTPPNLALSISV-----NGSSPESMLRNSAMSYKNTPSI---------------------------IRKRTYREAGNDIYSDCTCTPAHMSSCTPDKEVVDSTDLMNAKQGLLSPVHRSKTSVSDKSLGRRLEYAFDMEWDPATVRYCIPVSTTASSDANFAANMM 602
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3DBE8 ((Transcriptional activator Myb {ECO:0000313|EMBL:PHU28255.1}))

HSP 1 Score: 390.578 bits (1002), Expect = 3.546e-125
Identity = 256/612 (41.83%), Postives = 337/612 (55.07%), Query Frame = 0
 
Query:   38 AKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLD-NL--DLNLPLQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDMCSTDLTLGNAYTCESWLGSKSS-----RSQKYPEQEAVNQPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGSSQYSNYIGKGNTVLQT-PKLDAKHYGSFSDGPPYVKDIVAPVRTGEYSSVDDITKANSQSFCSTPSLAQSIVCTSSPESILRNSAMKYEHTPSIIRK--SRPKEG-------GSCSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVLGA 631
             KRSSQAGWT EEDN L +VVK+F GRNWK IAE L GRTDVQCLHRWQKVLNPEL KGPW KEEDD II+LV+K+G +KWS IAK LPGRIGKQCRERWHNHLDP IK++AW+E E+ +L  YHQIYGNKWAEIA+FLPGRTDNA+KNHWN + KK+LD NL   L   +QS  S D SS      +K    Q    + +S  + AG V   +D CSTDL +G A +  + L   +S     +S     ++ + +PL  +QF     + NG+ D   + N + + +    L+S     + +   + + +    +HP T G M+ S KR + G V+          +D  +++ S      E   Q +KK  N  Y +       +        + +  N     +     +SL+   PG ++  +   K N    T   L  K  G  +  PP VKD+  P+     S  + I + NS   CSTP        +SSPES+LRNSAM Y  TPSIIRK  SR  E        G+ +P+H +           +   +D + L  ++     SV+GK L RRLEYAFD EWD  + RC TPVSA S   +GA
Sbjct:   49 TKRSSQAGWTAEEDNLLTEVVKRFKGRNWKGIAECLNGRTDVQCLHRWQKVLNPELVKGPWTKEEDDHIIELVEKFGCKKWSIIAKSLPGRIGKQCRERWHNHLDPTIKRDAWTELEDLVLCRYHQIYGNKWAEIARFLPGRTDNAVKNHWNSTVKKRLDLNLLSRLGPDIQSEGSPDFSSHKKKLEIKKHLAQAHNAETLSLSKQAG-VDNAADACSTDLRIGCACSPRNDLHKGTSLFGACKSSVKNARDLI-KPLGGIQFGKAEILPNGETD---QSNLNLTKISDPLLTSLDFPLDPSRKTRWSSSQVKAVHPTTFGRMYESPKRSKYGTVSD---------TDHDFLTLSLAGF-TEVHSQGNKK--NKAYDIQSSLALKQPGFTEVHSKGNKKN-----KAYDTQSSLVLKQPGFTKIHSRGYKKNKAYDTQSSLAHKQPGFLNYEPPKVKDLTIPLTDENLSRDNIIGRQNSHLLCSTPLSLTVSANSSSPESVLRNSAMSYTKTPSIIRKKTSRFSEASGHYSCTGTTTPMHFL---------RSVPDREDTSNLKDRISGCKRSVSGKSLGRRLEYAFDMEWD--SSRCCTPVSAASPCAIGA 627
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2XKE7 ((Transcriptional activator Myb {ECO:0000313|EMBL:PHT57968.1}) (Fragment))

HSP 1 Score: 387.497 bits (994), Expect = 5.624e-124
Identity = 257/619 (41.52%), Postives = 338/619 (54.60%), Query Frame = 0
 
Query:   38 AKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLD----LNLPLQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDMCSTDLTLGNAYTCESWL--GSKSSRSQKYPEQEAVN--QPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHH-------FTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGSSQYSNYIGKGNTVLQT-PKLDAKHYGSFSDGPPYVKDIVAPVRTGEYSSVDDITKANSQSFCSTPSLAQSIVCTSSPESILRNSAMKYEHTPSIIRK--SRPKEG-------GSCSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVLGA 631
             KRSSQAGWT EEDN L +VVK+F GRNWK IAE L GRTDVQCLHRWQKVLNPEL KGPW KEEDD+II+LV+K+G +KWS IAK LPGRIGKQCRERWHNHLDP IK++AW+E+E+++L  YHQIYGNKWAEIA+FLPGRTDNA+KNHWN S+ KK  NL+    L   +QS  S D SS      +K    Q    + +   +  G V   +D CSTDL +G A +  + L  G+    + K  E+ A +  +PLS +QF     + NG+ D   + N + + +    L+S     + +   + + +    +HP T G M+ S KR +   V           +D  +++ S      E   Q +KK  N  Y +          FT     +N +    D  + + L+R            P  ++  +   K N    T   L  K  G  +  PP VKD+  P+     S  + I + NS   CSTP        +SSPES+LRNSAM Y  TPSIIRK  SR  E        G+ +P+H +    +          +D + L  ++     SV+GK L RRLEYAFD EWD  + RC TPVSA S   +GA
Sbjct:   50 TKRSSQAGWTAEEDNLLTEVVKRFKGRNWKGIAEFLNGRTDVQCLHRWQKVLNPELVKGPWTKEEDDQIIELVEKFGCKKWSIIAKSLPGRIGKQCRERWHNHLDPTIKRDAWTEQEDSVLCLYHQIYGNKWAEIARFLPGRTDNAVKNHWN-STVKKRSNLNLLSRLGPDIQSEGSPDFSSHKKKLEIKKHLAQAHNAETLCLSKQTG-VDNAADACSTDLRIGCACSPRNDLHKGTSLFGACKSSEKNARDLIKPLSGIQFGKAEILPNGETD---QSNLNLTKISDPLLTSLDFPLDPSRKTRWSSSQVKAVHPTTFGRMYESPKRSKYSTVND---------TDHDFLTLSLAGF-TEVHSQGNKK--NKAYDIQSSLALKQPGFTEVHSKDNKKNKAYDTQSSLVLKR------------PDFTKIHSRGYKKNKAYYTQSSLAHKQPGFLNYEPPKVKDLTIPLTDENLSRDNIIGRQNSHLLCSTPLSLTVSANSSSPESVLRNSAMSYTKTPSIIRKKTSRFSEASGHYSCTGTTTPMHFLRSVLD---------REDTSNLKDRISGCKRSVSGKSLGRRLEYAFDMEWD--SSRCCTPVSAASPCAIGA 628
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8GEZ9 ((uncharacterized protein LOC107865582 isoform X1 {ECO:0000313|RefSeq:XP_016567303.1}))

HSP 1 Score: 387.111 bits (993), Expect = 7.251e-124
Identity = 254/614 (41.37%), Postives = 338/614 (55.05%), Query Frame = 0
 
Query:   38 AKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNL------PLQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDMCSTDLTLGNAYTCESWL--GSKSSRSQKYPEQEAVN--QPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGSSQYSNYIGKGNTVLQT-PKLDAKHYGSFSDGPPYVKDIVAPVRTGEYSSVDDITKANSQSFCSTPSLAQSIVCTSSPESILRNSAMKYEHTPSIIRK--SRPKEG-------GSCSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVLGA 631
             KRSSQAGWT EEDN L +VVK+F GRNWK IAE L GRTDVQCLHRWQKVLNPEL KGPW KEEDD+II+LV+K+G +KWS IAK LPGRIGKQCRERWHNHLDP IK++AW+E E+++L  YHQIYGNKWAEIA+FLPGRTDNA+KNHWN + KK+   LDLNL       +QS  S D SS      +K    Q    + +S  +  G V   +D CST+L +G A +  + L  G+    + K  E+ A +  +P   +QF     + NG+ D   + N + + +    L+S     + +   + + +    +HP T G M+ S K  + G V+          +D  +++ S      E   Q +KK  N  Y +       ++       + +  N     +     +SL+   PG ++  +   K N    T   L  K  G  +  PP VKD+  P+     S  + I + NS   CSTP        +SSPES+LRNSAM Y  TPSIIRK  SR  E        G+ +P+H +           +   +D + L  ++     SV+GK L RRLEYAFD EWD  + RC TPVSA S   +GA
Sbjct:   51 TKRSSQAGWTAEEDNLLTEVVKRFKGRNWKGIAECLNGRTDVQCLHRWQKVLNPELVKGPWTKEEDDQIIELVEKFGCKKWSIIAKSLPGRIGKQCRERWHNHLDPTIKRDAWTELEDSVLCRYHQIYGNKWAEIARFLPGRTDNAVKNHWNSTVKKR---LDLNLLSRSGPDIQSEGSPDFSSHKKKLEIKKHLAQAHNAETLSLSKQTG-VDNAADACSTNLRIGCACSPRNDLHKGTSLFGACKSSEKNARDLIKPPGGIQFGKAEILPNGETD---QSNLNLTKISDPLLTSLDFPLDPSRKTRWSSSQVKAVHPTTFGRMYESPKSSKYGTVSD---------TDHDFLTLSLAGF-TEVHSQGNKK--NKAYDIQSSLALKQLGFTEVHSKGNKKN-----KAYDTQSSLVLKQPGFTKIHSRGYKKNKAYDTQSSLAHKQPGFLNYEPPKVKDLTIPLTDENLSRDNIIGRQNSHLLCSTPLSLTVSANSSSPESVLRNSAMSYTKTPSIIRKKTSRFSEASGHYSCTGTTTPMHFL---------RSVPDREDTSNLKDRISGCKRSVSGKSLGRRLEYAFDMEWD--SSRCCTPVSAASPCAIGA 629
[Close]
BLAST of DCAR_004664 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8G7K1 ((Uncharacterized protein {ECO:0000313|EMBL:PHT92468.1}))

HSP 1 Score: 386.726 bits (992), Expect = 8.391e-124
Identity = 254/614 (41.37%), Postives = 338/614 (55.05%), Query Frame = 0
 
Query:   38 AKRSSQAGWTEEEDNRLADVVKKFNGRNWKKIAESLPGRTDVQCLHRWQKVLNPELFKGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLPGRIGKQCRERWHNHLDPAIKKEAWSEREEAILSYYHQIYGNKWAEIAKFLPGRTDNAIKNHWNCSSKKKLDNLDLNL------PLQSPLSDDLSSEANLESVKIPAVQLGVGKAMSTYQIAGPVRKVSDMCSTDLTLGNAYTCESWL--GSKSSRSQKYPEQEAVN--QPLSRVQFRGNSSINNGKMDLPWKRNFHTSNVLASFLSSSSSITEEASGGKTNLAPQGVLHPLTSGGMFASCKRPRNGDVAIFNSEHKSILSDKPWMSCSPGSIDVETPPQLDKKLCNAPYKLVHHFTPSKMVENCERPRSDGSNIINLRRECVQGNSLLNLTPGSSQYSNYIGKGNTVLQT-PKLDAKHYGSFSDGPPYVKDIVAPVRTGEYSSVDDITKANSQSFCSTPSLAQSIVCTSSPESILRNSAMKYEHTPSIIRK--SRPKEG-------GSCSPVHKISMTCESRAANPIDLMDDKTTLHSQLHRSALSVAGKPLERRLEYAFDREWDPLAVRCSTPVSAPSEAVLGA 631
             KRSSQAGWT EEDN L +VVK+F GRNWK IAE L GRTDVQCLHRWQKVLNPEL KGPW KEEDD+II+LV+K+G +KWS IAK LPGRIGKQCRERWHNHLDP IK++AW+E E+++L  YHQIYGNKWAEIA+FLPGRTDNA+KNHWN + KK+   LDLNL       +QS  S D SS      +K    Q    + +S  +  G V   +D CST+L +G A +  + L  G+    + K  E+ A +  +P   +QF     + NG+ D   + N + + +    L+S     + +   + + +    +HP T G M+ S K  + G V+          +D  +++ S      E   Q +KK  N  Y +       ++       + +  N     +     +SL+   PG ++  +   K N    T   L  K  G  +  PP VKD+  P+     S  + I + NS   CSTP        +SSPES+LRNSAM Y  TPSIIRK  SR  E        G+ +P+H +           +   +D + L  ++     SV+GK L RRLEYAFD EWD  + RC TPVSA S   +GA
Sbjct:   49 TKRSSQAGWTAEEDNLLTEVVKRFKGRNWKGIAECLNGRTDVQCLHRWQKVLNPELVKGPWTKEEDDQIIELVEKFGCKKWSIIAKSLPGRIGKQCRERWHNHLDPTIKRDAWTELEDSVLCRYHQIYGNKWAEIARFLPGRTDNAVKNHWNSTVKKR---LDLNLLSRSGPDIQSEGSPDFSSHKKKLEIKKHLAQAHNAETLSLSKQTG-VDNAADACSTNLRIGCACSPRNDLHKGTSLFGACKSSEKNARDLIKPPGGIQFGKAEILPNGETD---QSNLNLTKISDPLLTSLDFPLDPSRKTRWSSSQVKAVHPTTFGRMYESPKSSKYGTVSD---------TDHDFLTLSLAGF-TEVHSQGNKK--NKAYDIQSSLALKQLGFTEVHSKGNKKN-----KAYDTQSSLVLKQPGFTKIHSRGYKKNKAYDTQSSLAHKQPGFLNYEPPKVKDLTIPLTDENLSRDNIIGRQNSHLLCSTPLSLTVSANSSSPESVLRNSAMSYTKTPSIIRKKTSRFSEASGHYSCTGTTTPMHFL---------RSVPDREDTSNLKDRISGCKRSVSGKSLGRRLEYAFDMEWD--SSRCCTPVSAASPCAIGA 627
Match NameStatsDescription
A0A7J0G8F2E-Value: 2.136e-134, PID: 44.30(Myb domain protein 3r-5 {ECO:0000313|EMBL:GFZ0705... [more]
A0A834GFV3E-Value: 8.676e-134, PID: 42.58(Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more]
A0A6A4L078E-Value: 2.596e-133, PID: 42.88(Uncharacterized protein {ECO:0000313|EMBL:KAE9450... [more]
A0A2R6Q8C1E-Value: 1.231e-131, PID: 43.97(Myb-related protein like {ECO:0000313|EMBL:PSS041... [more]
A0A4S4D3M5E-Value: 2.412e-131, PID: 41.29(Uncharacterized protein {ECO:0000313|EMBL:THF9690... [more]
A0A5J4ZVH3E-Value: 5.755e-126, PID: 41.14(Uncharacterized protein {ECO:0000313|EMBL:KAA8521... [more]
A0A2G3DBE8E-Value: 3.546e-125, PID: 41.83(Transcriptional activator Myb {ECO:0000313|EMBL:P... [more]
A0A2G2XKE7E-Value: 5.624e-124, PID: 41.52(Transcriptional activator Myb {ECO:0000313|EMBL:P... [more]
A0A1U8GEZ9E-Value: 7.251e-124, PID: 41.37(uncharacterized protein LOC107865582 isoform X1 {... [more]
A0A1U8G7K1E-Value: 8.391e-124, PID: 41.37(Uncharacterized protein {ECO:0000313|EMBL:PHT9246... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.