Resource Type:
Polypeptide
Name:
DCAR_000603
Identifier:
DCAR_000603.mRNA-protein
Sequence:
METQPPPINWSNIVKQPPKPPATKPPIVAPASIAAGSCKSTNGIAVAVVD
ANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPS
PDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPP
MHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDL
NMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVN
IEGKMVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESV
EKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLENEIEKSNVTDGDL
STILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEV
EHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVI
LQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLR
KVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQL
PQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGR
RNPNDNHYSRAKH*
Sequence Length:
614
Sequence Checksum:
63cf94c514c6815bd057e90ae90b7cb5
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_000603, derives from mRNA, DCAR_000603. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G8P3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937130.1}))
HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 410/625 (65.60%), Postives = 493/625 (78.88%), Query Frame = 0
Match: A0A7J7G8P3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937130.1}))
HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 410/625 (65.60%), Postives = 493/625 (78.88%), Query Frame = 0
Query: 10 WSNIVKQPPKPPATKPPIVAPAS--IAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEG-KMVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHL------ENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNP--------QGPEEVLEVEN----ISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKD-EDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
WSNIVKQ P V+ A+ + SCKST GIAVAVVDANAIIQGGE+L +DKFVSV+EVIDEVRDP SRH LN +PF V+T++PSPDSLKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RD PPP+HTVNV+RLPEKDLPGWGSNVPNLEEWEALEH D + P SRILPL+DLN+ IP N S +DGS+GN E+H N+E +G ++KPRKY PK+KE++IEG KMVA G+DASQG D+N DWLPAVS+STHR++LRR+ARRE E EKD Q D + ++SD ++ + D +T +S +E+H+ E E+ + ++ DLSTIL +MRLEEDS + I++G + SN EE + N + ED +++ E+EH +S+Q ES + S DDNSSEQSW LRSLSES+VAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VT EIGRIFCP CGNGGTLRKVAVTVGENGI+++ARRPR+SLRGTKFSLP+PQGGRDAITKNP+LREDQLP K L+PKTKKK+K EDDI+A ++IF HHTDK+APLQPPVRKALAVFSG+RNPNDNH+SR K
Sbjct: 49 WSNIVKQKAVAPKQVRHGVSAAADGVVVESCKSTKGIAVAVVDANAIIQGGERLSNCADKFVSVSEVIDEVRDPLSRHRLNFVPFTVDTIDPSPDSLKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDIPPPIHTVNVRRLPEKDLPGWGSNVPNLEEWEALEHESEDKSNPNSRILPLQDLNLKAIPTAHNHSTEDGSMGNEGETHVGNQEDANGNFSKPRKYLPKQKEISIEGKKMVADGIDASQGQFDDNAGDWLPAVSKSTHRKYLRRQARREMSEALSEKDGQQDAVENIESDNLENRTCPDQLTVKSSDETHVVIANLEETEVSEGKNSNEDLSTILNEMRLEEDSLKAIQEGKEQSNSCAGLEPNCSAGEEDMSDSNGNIGVEEDDIENVNEELEHLEISSQTNESFDASCVDDNSSEQSWTLRSLSESTVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTPEIGRIFCPSCGNGGTLRKVAVTVGENGIVLSARRPRISLRGTKFSLPLPQGGRDAITKNPILREDQLPHKILYPKTKKKSKQGEDDIYALDYIFRHHTDKRAPLQPPVRKALAVFSGKRNPNDNHFSRPK 673
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QNB5 ((RNA-binding protein {ECO:0000313|EMBL:PSS11416.1}))
HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 417/636 (65.57%), Postives = 490/636 (77.04%), Query Frame = 0
Match: A0A2R6QNB5 ((RNA-binding protein {ECO:0000313|EMBL:PSS11416.1}))
HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 417/636 (65.57%), Postives = 490/636 (77.04%), Query Frame = 0
Query: 5 PPPINWSNIVKQPPKPPATK-PPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHL------ENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNP-QGPE-------------------EVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
P + WSNIVKQ P P + P A + SCKST GIAVAVVDANAIIQGGE+L SDKF+SV+EVIDEVRDP SRH LN LPF V T +PSP++LKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSPPP+HTVNVKRLPEKDLPGWGSNVPNLEEWEALEH D + P SRILPL+DLN+N IP + + + +DGS+ N E H EN+E DG + KPR++ P+KKE+NIEGK MVA G+DASQG +++ DW+PAVSRSTHRRFLRR+ARRE YE EKD Q D + ++SD ++ + D +T +S +E+ + E ++ + +D DLSTIL QMRLEEDS + +E+ N+ SN GPE E E+ENI E +EH +S+Q ES N S DDNSSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VTTEIGRIFCP CGNGGTLRKVAVTVGENGI++ ARRPRVSLRGT+FSLP+P+GGRDAITKNP+LREDQLP KFL+PK KKKNK DDIF+S+ IF HHTDK APLQPP+R+ LAVF G+RNPNDNHYSR K
Sbjct: 8 PAALCWSNIVKQQPAPNQNQHDPTAAADRVFVDSCKSTKGIAVAVVDANAIIQGGERLANSSDKFISVSEVIDEVRDPTSRHRLNFLPFTVETSDPSPEALKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPIHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHEADDKSNPNSRILPLQDLNLNTIPTDHHHAAEDGSMENDGEPHVENQEDADGSFRKPRRFLPQKKEINIEGKKMVADGIDASQGQFNDDAGDWMPAVSRSTHRRFLRRQARREMYEALSEKDGQQDAVENIESDNLENERFTDQLTVKSSDETPVVHPILEERKVSERKASDEDLSTILNQMRLEEDSLKALEEENEQSNSCAGPESRTSTAEETMSNNSGSIGVEGDEIENIGEG--------LEHLEISSQTNESFNASYVDDNSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVLTARRPRVSLRGTQFSLPLPKGGRDAITKNPILREDQLPHKFLYPKKKKKNKQGDDIFSSDDIFRHHTDKGAPLQPPIRQTLAVFGGKRNPNDNHYSRRK 635
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRP7 ((Putative RNA-binding protein NOB1 {ECO:0000313|EMBL:MPA46186.1}) (Fragment))
HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 407/622 (65.43%), Postives = 486/622 (78.14%), Query Frame = 0
Match: A0A5B6ZRP7 ((Putative RNA-binding protein NOB1 {ECO:0000313|EMBL:MPA46186.1}) (Fragment))
HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 407/622 (65.43%), Postives = 486/622 (78.14%), Query Frame = 0
Query: 10 WSNIVKQPPKPPATKPPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN-EIEKSNVTDG-----DLSTILTQMRLEEDSSEVIEDGNDV--------SNPQGPEEVLEVEN----ISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
WS+IVKQ P P + + + SC+ST GIAVAVVDANAIIQGGE L K +DKFVSV+EV+DEVRDP SRH LN +PF ++TMEPSP++LKKV+NFARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSPPP+HTVNVKRLPEKD+PGWGSNVPNLEEWEALEH V DG+ P SRILPLKD+++NVI + D+ S +DGS+G E S N+E D + KPR+Y PKKKE+NIEGK MV+ G+DASQG D+N DWLPAVSRSTHRR+LRRKARRE YE S EK+ Q D A ++D + + + +S E+H+ N +E+S++ DG DLSTIL QMRL+EDS +++ ++ +N EE N + D V+ +EH +Q ES V D NSSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHACY VT E+GRIFCPKCGNGGTLRKVAVTVGENGI+++ARRPR+SLRGTKFSLP+PQGGRDA+TKNP+LREDQLP + L+PKTKKK K DDIFAS++IF HHTDK+APLQPP+RKALAVFSG+RNPNDNH++R K
Sbjct: 22 WSSIVKQQPPPTTQNQQVSSADRVFVESCQSTKGIAVAVVDANAIIQGGETLAKCADKFVSVSEVMDEVRDPTSRHRLNFVPFTLDTMEPSPEALKKVVNFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPIHTVNVKRLPEKDMPGWGSNVPNLEEWEALEHEVEDGSNPSSRILPLKDISLNVI-STDHHSTEDGSMGYGAEHQSGNQEDGDDSFRKPRRYLPKKKEINIEGKKMVSDGIDASQGQFDDNAGDWLPAVSRSTHRRYLRRKARREIYEASSEKEGQQDAAGNEENDNLEDTRCLNQMMHESSEETHVVNGNLEESSIRDGKSSGKDLSTILNQMRLDEDSLRALQEEEELGISCMGLEANNSTVEEDTPKNNANIVVEVDEVEITNDRLEHLETFSQTAES--VEYMDGNSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYKVTMEVGRIFCPKCGNGGTLRKVAVTVGENGIVLSARRPRISLRGTKFSLPLPQGGRDAVTKNPILREDQLPHRLLYPKTKKKGKQGDDIFASDYIFRHHTDKRAPLQPPIRKALAVFSGKRNPNDNHFARPK 640
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FF55 ((RNA-binding NOB1-like protein {ECO:0000313|EMBL:GFY97332.1}))
HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 410/628 (65.29%), Postives = 486/628 (77.39%), Query Frame = 0
Match: A0A7J0FF55 ((RNA-binding NOB1-like protein {ECO:0000313|EMBL:GFY97332.1}))
HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 410/628 (65.29%), Postives = 486/628 (77.39%), Query Frame = 0
Query: 5 PPPINWSNIVKQPPKPPATK-PPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHL------ENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNPQG--------PEEVLEVEN----ISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
P + WSNIVKQ P P + P A + SCKST GIAVAVVDANAIIQGGE L SDKF+SV+EVIDEVRDP SRH LN LPF V T +PSP++LKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSPPP+HT+NVKRLPEKDLPGWGSNVPNLEEWEALEH D + P SRILPL+DLN+N IP + + + +DGS+ N E H EN++ DG + KPR+ +KKE+NIEGK MVA G+DASQG +++ DW+ AVSRSTHRRFLRR+ARRE YE EKD Q D + ++SD ++ + D +T +S +E+ + E ++ + +D DLSTIL QMRLEEDS + +E+ N SN G EE + N + D +++ +EH +S+Q ES N S DDNSSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VTTEIGRIFCP CGNGGTLRKVAVTVGENGI++ ARRPRVSLRGT+FSLP+P+GGRDAITKNP+LREDQLPQKFL+PK KKKNK DDIF+S+ IF HHTDK APLQPP+R+ LAVF G+RNPNDNHYSR K
Sbjct: 8 PAALCWSNIVKQQPAPNQNQHDPTAAADRVFVDSCKSTKGIAVAVVDANAIIQGGEGLANSSDKFISVSEVIDEVRDPTSRHRLNFLPFTVETSDPSPEALKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPIHTINVKRLPEKDLPGWGSNVPNLEEWEALEHEADDKSNPNSRILPLQDLNLNTIPTDHHHAAEDGSMENDGEPHVENQDDADGSFRKPRRVLRQKKEINIEGKKMVADGIDASQGQFNDDAGDWMAAVSRSTHRRFLRRQARREMYEALSEKDGQQDAVENIESDNLENERFTDQLTVKSSDETPVVHPILEERKVSERKASDEDLSTILNQMRLEEDSLKALEEENGQSNSCGGPESRTSTAEEAMSNNNGSIGVEGDEIENIGEGLEHLEISSQTNESFNASYVDDNSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVLTARRPRVSLRGTQFSLPLPKGGRDAITKNPILREDQLPQKFLYPKKKKKNKQGDDIFSSDDIFRHHTDKGAPLQPPIRQTLAVFGGKRNPNDNHYSRRK 635
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3GKR3 ((Nin one binding (NOB1) Zn-ribbon-like protein {ECO:0000313|EMBL:OMO58672.1}))
HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 406/621 (65.38%), Postives = 487/621 (78.42%), Query Frame = 0
Match: A0A1R3GKR3 ((Nin one binding (NOB1) Zn-ribbon-like protein {ECO:0000313|EMBL:OMO58672.1}))
HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 406/621 (65.38%), Postives = 487/621 (78.42%), Query Frame = 0
Query: 2 ETQPPPINWSNIVKQPPKPPATKPPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN----EIEKSNVTDGD--LSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKK--NKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
E++P P WSNI+K P P T+ A + SCKST GIAVAVVDANAII+GGEKL +DKFV+V EV+ E+RDP SR+ L +PF +++MEPSPD+L KVI FARATGDLQTLSDVDLKLIALT+ LEAQIHG+ HIR++PPP+H VNVKRLPEKDLPGWGSNVPNLEEWEAL+ DG SRILPLKDLNMNV+P+++++ ++GSV E+HSEN+E + G+ +PR+Y P+KKEV IEGK MVA G+DASQG LD+N DDW PAVSRSTHRRFLRRKARRE YE VEKD Q D K+ D + + AS D + QS E+H +N E E++ GD LS+IL QMRLEEDS +++ +V N + L VE ED V++E ++ F +S+Q E+ + S ADD SSEQSWMLRSLSESSVAC+T D+AMQNV+LQMGLRL+APGGMQIR+LHRW+LKCHACY VT EIGRIFCPKCGNGGTLRKVAVTVGENG+++A+ RPR+SLRGTKFSLP+PQGGRDAITKN VLREDQLPQKFL+PKTKKK + +DD+F + F HHTDK+APLQPPVRKALAVFSG+RNPNDNHYSR+K
Sbjct: 10 ESKPAPC-WSNILKSQPPKPQTQNQTAATNQLFVESCKSTKGIAVAVVDANAIIEGGEKLTNSADKFVTVPEVLAEIRDPVSRYRLAFIPFSIDSMEPSPDALNKVIKFARATGDLQTLSDVDLKLIALTYTLEAQIHGSNHIRNAPPPVHVVNVKRLPEKDLPGWGSNVPNLEEWEALDGEAEDGTNTNSRILPLKDLNMNVVPSDNHS--ENGSVETMGETHSENQEDAEQGFRRPRRYLPQKKEVKIEGKKMVADGIDASQGQLDDNGDDWRPAVSRSTHRRFLRRKARREYYEALVEKDCQEDIEKSKDKNNVEDASGTDQLLPQSAEEAHSKNGISEEAERTEAGKGDEDLSSILKQMRLEEDSLNALQEAEEVENTVDDDVNLAVEGDKEDMVNEE---LDQFEMSSQTNETVDASYADDVSSEQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWVLKCHACYTVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLASHRPRISLRGTKFSLPLPQGGRDAITKNFVLREDQLPQKFLYPKTKKKVNKQGDDDLFMAGVAFTHHTDKRAPLQPPVRKALAVFSGKRNPNDNHYSRSKQ 624
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q8C6 ((RNA-binding protein {ECO:0000313|EMBL:PSS04164.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 405/619 (65.43%), Postives = 476/619 (76.90%), Query Frame = 0
Match: A0A2R6Q8C6 ((RNA-binding protein {ECO:0000313|EMBL:PSS04164.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 405/619 (65.43%), Postives = 476/619 (76.90%), Query Frame = 0
Query: 10 WSNIVKQPPKPPATKPPIVAPAS-IAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQS--LNESHLENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNP-QGPEEVLEVE---------NISEDG--VDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
WSNIVKQ P + A A + SCKST GIAV VVDAN+IIQGGE+L +DKFVSV+EVIDEVRDP SRH LN LPF V T +PS ++LKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSP P+HTVNVKRLPEKDLPGWGSNVPNLEEWEALEH D + P SRILPL+DLN+N I + +DGS+ N H EN+E DG + K ++ P+KKE+NIEGK MVA G+DASQG ++ DWLPAVSRSTHR+FLRR+ARRE YE EKD Q D + ++SD +S + D +TD++ ++ E +I + +D +LST L QMRLEEDS + + N+ SN GPE E NI +G +++ +EH +S+Q ES N S DD+SSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VTTEIGRIFCP CGNGGTLRKVAVTVGENGI++AA RPRVSLRGT+FSLP+P+GGRDAITKNP+LREDQLP KFL+PK KKKNK DDIFAS+ IF HHTDK APLQPP+R+ALAVFSG+RNPNDNHYSR K
Sbjct: 13 WSNIVKQQPAANPNQNDFTAAADRVFVDSCKSTEGIAVVVVDANSIIQGGERLANSADKFVSVSEVIDEVRDPTSRHRLNFLPFTVETSDPSAEALKKVISFARATGDLQTLSDVDLKLIALTYSLEAQIHGTKHLRDSPSPIHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHEAEDKSNPNSRILPLQDLNLNTIATYHHHGTEDGSMDNDGIRHVENQEDADGSFRKSVRFSPQKKEINIEGKKMVADGIDASQGKFVDDAGDWLPAVSRSTHRKFLRRQARREMYEALSEKDGQQDAVENIESDNLESERFADQLTDKTPVVHPILEERKISEGKTSDENLSTTLNQMRLEEDSLKARHEENEQSNSCAGPESKTSTEEEATSDNNGNIGVEGDEIENIDEGLEHLEISSQNNESFNASYVDDDSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVLAAHRPRVSLRGTQFSLPLPKGGRDAITKNPILREDQLPHKFLYPKKKKKNKQGDDIFASDDIFRHHTDKGAPLQPPLRQALAVFSGKRNPNDNHYSRRK 631
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PHJ0 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453511.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 419/621 (67.47%), Postives = 470/621 (75.68%), Query Frame = 0
Match: A0A5N6PHJ0 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453511.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 419/621 (67.47%), Postives = 470/621 (75.68%), Query Frame = 0
Query: 1 METQPPPINWSNIVKQPPKPPATKP----PIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNV-IPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEG-KMVAAGVDASQGALDN-NTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSI-ADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
ME P WSNIVKQ P P P + A+ GSCKST GIAVAVVDANAIIQGGE+LH +DKFVSV++VI EVRDP SRH LN LPF V TMEPSP+SLKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGT H+R+SPPP+ TVNVKRLPEKDLPGWGSNVPNL +WEALEHAVGDG GPESRILPLKDLNMNV I + + + +D + + + H +G K K+ PKKKEV IEG KMVA G+DASQG D+ N DDWLPAVSRSTHRRFLRRKAR E YE S EKD+QND + D D DL+ EN E D+ST+L QMRL+EDS +GN E+EN++E E+E ++++ ES + S+ DD+SSEQSWMLRSLSESSVAC+T DFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHAC+ VT EIGRIFCP CGNGGTLRKVAVTVGENG +AARRPR+SLRGTKFSLP+PQGGRDAITKNP+LREDQLP KFLHPKTKKKNK DDIFA+N IF HHTDK+APLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct: 1 MEAPKPAPCWSNIVKQNPPPQNPNNHGLDPSQSVATALVGSCKSTKGIAVAVVDANAIIQGGEQLHNAADKFVSVSDVIQEVRDPTSRHRLNFLPFTVETMEPSPESLKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTSHLRESPPPIRTVNVKRLPEKDLPGWGSNVPNLAQWEALEHAVGDGTGPESRILPLKDLNMNVSISGDKDQNNEDFASADGSKPHD------NGALDKSWKHLPKKKEVVIEGRKMVADGIDASQGQHDDDNADDWLPAVSRSTHRRFLRRKARLEKYESS-EKDVQNDG----NEDNLDDDKLPDLI---------YENSDELCANGGEDISTVLDQMRLQEDS-----EGN------------EIENVNE--------ELEQLDVTSATTESVDASLYVDDDSSEQSWMLRSLSESSVACVTGDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACFKVTMEIGRIFCPSCGNGGTLRKVAVTVGENGATIAARRPRISLRGTKFSLPLPQGGRDAITKNPILREDQLPHKFLHPKTKKKNKHVDDIFATNEIFTHHTDKRAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 576
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PFN2 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453539.1}))
HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 418/621 (67.31%), Postives = 470/621 (75.68%), Query Frame = 0
Match: A0A5N6PFN2 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453539.1}))
HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 418/621 (67.31%), Postives = 470/621 (75.68%), Query Frame = 0
Query: 1 METQPPPINWSNIVKQPPKPPATKP----PIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNV-IPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEG-KMVAAGVDASQGALDN-NTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSI-ADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
ME P WSNIVKQ P P P + A+ GSCKST GIAVAVVDANAIIQGGE+LH +DKFVSV++VI EVRDP SRH LN LPF V TMEPSP+SLKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGT H+R+SPPP+ TVNVKRLPEKDLPGWGSNVPNL +WEALEHAVGDG GPESRILPLKDLN+NV I + + + +D + + + H +G K K+ PKKKEV IEG KMVA G+DASQG D+ N DDWLPAVSRSTHRRFLRRKAR E YE S EKD+QND + D D DL+ EN E D+ST+L QMRL+EDS +GN E+EN++E E+E ++++ ES + S+ DD+SSEQSWMLRSLSESSVAC+T DFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHAC+ VT EIGRIFCP CGNGGTLRKVAVTVGENG +AARRPR+SLRGTKFSLP+PQGGRDAITKNP+LREDQLP KFLHPKTKKKNK DDIFA+N IF HHTDK+APLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct: 1 MEAPKPAPCWSNIVKQNPPPQNPNNHGLDPSQSVATALVGSCKSTKGIAVAVVDANAIIQGGEQLHNAADKFVSVSDVIQEVRDPTSRHRLNFLPFTVETMEPSPESLKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTSHLRESPPPIRTVNVKRLPEKDLPGWGSNVPNLAQWEALEHAVGDGTGPESRILPLKDLNLNVSISGDKDQNNEDFASADGSKPHD------NGALGKSWKHLPKKKEVVIEGRKMVADGIDASQGQHDDDNADDWLPAVSRSTHRRFLRRKARLEKYESS-EKDVQNDG----NEDNLDDDKLPDLI---------YENSDELCANGGEDISTVLDQMRLQEDS-----EGN------------EIENVNE--------ELEQLDVTSATTESVDASLYVDDDSSEQSWMLRSLSESSVACVTGDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACFKVTMEIGRIFCPSCGNGGTLRKVAVTVGENGATIAARRPRISLRGTKFSLPLPQGGRDAITKNPILREDQLPHKFLHPKTKKKNKHVDDIFATNEIFTHHTDKRAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 576
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2W3F9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT39719.1}))
HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 422/637 (66.25%), Postives = 492/637 (77.24%), Query Frame = 0
Match: A0A2G2W3F9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT39719.1}))
HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 422/637 (66.25%), Postives = 492/637 (77.24%), Query Frame = 0
Query: 1 METQPPPINWSNIVKQPP------KPPATKPPIVAPASIAA-----GSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVE-KDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN--EIEKSNVTDGD--LSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHE-------VEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
M+TQPPP WS I+KQPP + PAT A + A G CKST GIAVAVVDANAIIQGG+KL+ +D+FVSV EV+ E+RD SRHSLN LPF V+T+EPSPDSLKKVI+FARATGDL TLSDVDLKLIALT+ LEAQ HGT+H+RD PPP+HTVNVKRLPEK+LPGWG+NVPN EEWEA+EHA+ +G SRILPLKDL++NVIP D S DGSV N +SHSENK D G++KPRKY P+KKEV IEGK MVA G+DASQG D++ DDWLPAVSRSTHRRFLRRKARRE E S + D+Q T T+D + ++ D+ + E+ N + + S V DG+ LSTIL+QMRLEEDS++ ++D DVS E + + S + DDE VE + +Q ES S DDNSSEQSWML+SLSESSVAC+T+DFAMQNVILQMGLRLVAPGGMQIRELHRW+LKCHACY VTT++GRIFCP CGNGGTLRKVAVTVGENGI++AARRPRVSLRGTKFSLP+PQGGRDA+TKNP+LREDQLPQK L+PKTKKKNK D+I+ + IFL+HT KKAPLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct: 1 MDTQPPPC-WSTILKQPPPPPPPPQNPATVTADAASVATTATGVLVGRCKSTKGIAVAVVDANAIIQGGDKLNHSADRFVSVPEVLLEIRDENSRHSLNFLPFTVDTLEPSPDSLKKVISFARATGDLHTLSDVDLKLIALTYTLEAQFHGTQHLRDCPPPIHTVNVKRLPEKELPGWGANVPNPEEWEAIEHALDEGANTTSRILPLKDLSLNVIPL-DQQSSRDGSVVNGGDSHSENKMDADDGFSKPRKYLPQKKEVKIEGKKMVADGIDASQGQYDDHADDWLPAVSRSTHRRFLRRKARREMSETSSKMDDLQEATENTVD-ENLNNCQCDDISMHHNPEENTTANTEDGKVSEVRDGEEHLSTILSQMRLEEDSAKALQDAADVSIFTEGTESNDTKQNSNELEDDEGENFDTADGGVEDAEMDSQMDESIETSFVDDNSSEQSWMLKSLSESSVACVTADFAMQNVILQMGLRLVAPGGMQIRELHRWVLKCHACYKVTTDVGRIFCPNCGNGGTLRKVAVTVGENGIVIAARRPRVSLRGTKFSLPLPQGGRDAVTKNPILREDQLPQKLLYPKTKKKNKG-DEIYTPDTIFLNHTSKKAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 633
BLAST of DCAR_000603 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3BPY0 ((Uncharacterized protein {ECO:0000313|EMBL:PHU08529.1}))
HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 423/639 (66.20%), Postives = 493/639 (77.15%), Query Frame = 0
Match: A0A2G3BPY0 ((Uncharacterized protein {ECO:0000313|EMBL:PHU08529.1}))
HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 423/639 (66.20%), Postives = 493/639 (77.15%), Query Frame = 0
Query: 1 METQPPPINWSNIVKQPPKPPATKPPIVAPAS-------------IAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVE-KDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN--EIEKSNVTDGD--LSTILTQMRLEEDSSEVIEDGNDVS-NPQGPEE------VLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
M+TQPPP WS I+KQPP PP + A A+ + G CKST GIAVAVVDANAIIQGG+KLH +D+FVSV EV+ E+RD SRHSLN LPF V+T+EPSPDSLKKVI+FARATGDL TLSDVDLKLIALT+ LEAQ HGT+H+RD PPP+HTVNVKRLPEK+LPGWG+NVPN EEWEA+EHA+ +G SRILPLKDL++NVIP D S DGSV N +SHSENK D G++KPRKY P+KKEV IEGK MVA G+DASQG D++ DDWLPAVSRSTHRRFLRRKARRE E S + D+Q T T+D + ++ D+ + E+ N + + S V DG+ LSTIL+QMRLEEDS++ ++D DVS +GPE E+E+ + D VE + Q ES S DDNSSEQSWML+SLSESSVAC+T+DFAMQNVILQMGLRLVAPGGMQIRELHRW+LKCHACY VTT++GRIFCP CGNGGTLRKVAVTVGENGI++AARRPRVSLRGTKFSLP+PQGGRDA+TKNP+LREDQLPQK L+PKTKKKNK D+I+ + IFL+HT KKAPLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct: 1 MDTQPPPC-WSTILKQPPPPPQNPATVTADAASGATTAAVASATGVLVGRCKSTKGIAVAVVDANAIIQGGDKLHHSADRFVSVPEVLLEIRDENSRHSLNFLPFTVDTLEPSPDSLKKVISFARATGDLHTLSDVDLKLIALTYTLEAQFHGTQHLRDCPPPIHTVNVKRLPEKELPGWGANVPNPEEWEAIEHALDEGANTTSRILPLKDLSLNVIPL-DQQSSRDGSVVNGGDSHSENKMDADDGFSKPRKYLPQKKEVKIEGKKMVADGIDASQGQYDDHADDWLPAVSRSTHRRFLRRKARREMSETSSKMDDLQEATENTVD-ENLNNCQCDDISMHHNPEENTTANTEDGKVSEVRDGEEHLSTILSQMRLEEDSAKALQDAADVSIFTEGPESNDTKQNSNELEDDEGENFDTADGGVEDAEMDCQMDESIETSFVDDNSSEQSWMLKSLSESSVACVTADFAMQNVILQMGLRLVAPGGMQIRELHRWVLKCHACYKVTTDVGRIFCPNCGNGGTLRKVAVTVGENGIVIAARRPRVSLRGTKFSLPLPQGGRDAVTKNPILREDQLPQKLLYPKTKKKNKG-DEIYTPDTIFLNHTSKKAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 635
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7G8P3 | E-Value: 0.000e+0, PID: 65.60 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5937... [more] |
| A0A2R6QNB5 | E-Value: 0.000e+0, PID: 65.57 | (RNA-binding protein {ECO:0000313|EMBL:PSS11416.1}... [more] |
| A0A5B6ZRP7 | E-Value: 0.000e+0, PID: 65.43 | (Putative RNA-binding protein NOB1 {ECO:0000313|EM... [more] |
| A0A7J0FF55 | E-Value: 0.000e+0, PID: 65.29 | (RNA-binding NOB1-like protein {ECO:0000313|EMBL:G... [more] |
| A0A1R3GKR3 | E-Value: 0.000e+0, PID: 65.38 | (Nin one binding (NOB1) Zn-ribbon-like protein {EC... [more] |
| A0A2R6Q8C6 | E-Value: 0.000e+0, PID: 65.43 | (RNA-binding protein {ECO:0000313|EMBL:PSS04164.1}... [more] |
| A0A5N6PHJ0 | E-Value: 0.000e+0, PID: 67.47 | (Uncharacterized protein {ECO:0000313|EMBL:KAD6453... [more] |
| A0A5N6PFN2 | E-Value: 0.000e+0, PID: 67.31 | (Uncharacterized protein {ECO:0000313|EMBL:KAD6453... [more] |
| A0A2G2W3F9 | E-Value: 0.000e+0, PID: 66.25 | (Uncharacterized protein {ECO:0000313|EMBL:PHT3971... [more] |
| A0A2G3BPY0 | E-Value: 0.000e+0, PID: 66.20 | (Uncharacterized protein {ECO:0000313|EMBL:PHU0852... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |