DCAR_004683

Resource Type: 
Polypeptide
Name: 
DCAR_004683
Identifier: 
DCAR_004683.mRNA-protein
Sequence: 
MAEECQSRRQLNPWLLHLQKLALELKCPLCCCIKTSTKFGSECPSCQSKY
ADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKI
SSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMI
AVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNKV
EEIDMNQMGQLSPTCTDSLGDMNDNSCDPASSRDAKRQKKSSSEHGGGET
GEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESEL
ARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMT
CPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWV
LCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTL
KVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGR
LQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLAT
LSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQV
LKHIWILESIAACTLHPFF*
Sequence Length: 
620
Sequence Checksum: 
aa41e2d5d9c22def6a57719309a772d4
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_004683, derives from mRNA, DCAR_004683.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X560 ((protein BREAST CANCER SUSCEPTIBILITY 1 homolog {ECO:0000313|RefSeq:XP_009781615.1}))

HSP 1 Score: 530.406 bits (1365), Expect = 3.313e-179
Identity = 301/687 (43.81%), Postives = 396/687 (57.64%), Query Frame = 0
 
Query:    1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK-------------ISSVNGTKNKLNQVDADGNSSSGT-FFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGV-----------QDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNK---VEEIDMNQMG----QLSPTCTDSLGDMNDN---SCDPASSRDAKRQKKSSSEH-GGGE-------------TGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLA-TLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            MA E QS  R LNP   H+QKL LELKCPLC                   C+  ST+   EC  C+ +Y ++E+R+ P MES+++I+RSLDAT    +FQ         L QSP+SV              I S N    ++N+ +  G   +G     LL  +  +  L +   + + +++  V+  +PG             +   + V   D     A   V +  H   +G V+  V      EE D+ +      +LS T   S    N +   +C  + S    + K  S +H   G              TG M+HYANG+ V G V   S  I VH  CIDW PQVYY+GD +RNLE+ELAR++KLKC+ CGLKGA LGC  KSCRRSYH PCA +I  CRWD D+++M CP HK+VKFP E+SK RK A  +A   +APIA ++ NFW +S  G K+WVLCGSALS EEK  + KFA+ CGAT+ ++WNPNVTHVIA+ D  GA TRTLKVLMAIL G+W++T+DWIKAC   N PV+EE YE  LD HGC+ GPK+GRL+   NAPKLF G  FY SGD+  AYK DL +LV   GGS++ TKEQL   +      +S+ LVVYN+DP +     + ++V+L R   AE+LA + GCQV++H WIL+SIAAC L PF
Sbjct:    1 MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQCECLVCKHQYVNEEIRAVPHMESMIAIFRSLDATFNAKVFQFQSPDAGTTLEQSPISVNADDKSRNEQSVKAIVSSNDPNKEINRRNGHGIPWNGVNNLSLLPSSDRKADLKNERNDAEEIDLNQVQQQSPGSSHSSDNNKDIVKETSELRVRNNDIKSHIAKRSVEDSSHV-VEGLVHHAVKHEHVFEERDVKRQKKLSYELSETILQSHATANSDCTLACKLSESSLVAQPKAVSDQHLPKGSVCAFCHTSKITEGTGPMLHYANGREVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDTLRNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPSHKSVKFPSEKSKSRKRASMEACPKSAPIASERLNFWETSSDGPKEWVLCGSALSPEEKYMMVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIAANCPVNEEPYEVNLDNHGCFGGPKAGRLRASSNAPKLFDGFKFYLSGDYVAAYKKDLLDLVEKGGGSIIHTKEQLIYQIGPMQTTNSSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDLAKQIGCQVIQHTWILQSIAACKLEPF 686    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4BX85 ((BRCA1-associated RING domain protein 1 {ECO:0000313|RefSeq:XP_016493384.1}))

HSP 1 Score: 525.398 bits (1352), Expect = 3.737e-177
Identity = 297/687 (43.23%), Postives = 394/687 (57.35%), Query Frame = 0
 
Query:    1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK-------------ISSVNGTKNKLNQVDADGNSSSG-TFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGV-----------QDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNK---VEEIDMNQMG----QLSPTCTDSLGDMNDN---SCDPASSRDAKRQKKSSSEH-GGGE-------------TGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLA-TLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            MA E QS  R LNP   H+QKL LELKCPLC                   C+  ST+   ECP C+ +Y +QE+R+ P +ES+++I+RSLDAT    +FQ           Q P+SV              I S N    ++N+ +  G   +G +   LL  +  +  L +     + +++  ++  +PG             +   + V   D     A   V +  H   +G V+  +      EE D+ +      +LS T   S    N +   +C  + S    + K  S +H   G              TG M+HYANG+ V G V   S  I VH  CIDW PQVYY+GD +RNLE+ELAR++KLKC+ CGLKGA LGC  KSCRRSYH PCA +I  CRWD D+++M CP HK+VKFP E+SK RK A  +A   +API  ++ NFWA+S  G K+WVLCGSALS EEK  + KFA+ CGAT+ ++WNPNVTHVIA+ D  GA TRTLKVLMAIL G+W++T+DWIKAC   N PV EE YE  LD HGC+ GPK+GRL+   NAPKLF G  FY SGD+  AYK DL +LV   GGS++ +KEQL   +      +S+ LVVYN+DP +     + ++V+L R   AE+LA + GCQV++H WIL+SIAAC L PF
Sbjct:    1 MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQCECPVCKHQYVNQEIRAVPHVESMIAIFRSLDATFNAKVFQFKSPDAGWSSEQYPISVNLDDKSRNEQTVKAIVSSNDPNKEINRCNGHGIPWNGVSHLSLLPSSDRKADLKNERNIAEEIDLNQLQQQSPGSSHSSDNNKDIVKETSELRVRNNDIKSHTAKMSVEDSSHV-VEGLVHHTIKHEHVFEERDLKRQKKLSYELSETVLQSHAITNSDRSLACKLSESSLVAQPKAVSDQHLPKGSVCAFCHTSKITEGTGPMLHYANGREVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDTLRNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPSHKSVKFPSEKSKSRKRASMEACPESAPITSERLNFWATSSDGPKEWVLCGSALSSEEKYMMVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIGANCPVIEEPYEVSLDNHGCFGGPKAGRLKASSNAPKLFDGFKFYLSGDYVAAYKKDLLDLVEKGGGSIIHSKEQLIYQIGSMKATNSSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDLAKQIGCQVIQHTWILQSIAACKLEPF 686    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6JB20 ((Brca1-associated ring domain protein 1 {ECO:0000313|EMBL:OIT06903.1}))

HSP 1 Score: 524.628 bits (1350), Expect = 6.424e-177
Identity = 301/689 (43.69%), Postives = 395/689 (57.33%), Query Frame = 0
 
Query:    1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK-------------ISSVNGTKNKLNQVDADGNSSSGT-FFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVAN-----------IQHPG--TDGSVNPEVNK---VEEIDMNQMG----QLSPTCTDSLGDMNDN---SCDPASSRDAKRQKKSSSEH-GGGE-------------TGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLA-TLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            MA E QS  R LNP   H+QKL LELKCPLC                   C+  ST+   ECP C+  Y +QE+R+ P +ES+++I+RSLDAT    +FQ           QSPVSV              I S N    ++N+ +  G   +G     LL  +  +  L +     + +++  ++  +PG     H   N  D     ++ RV N           I+      +G V+  +      EE D+ +      +LS T   S    N +   +C  + S    + K  S++H   G              TG M+HYANGK V G V   S  I VH  CIDW PQVYY+GD +RNLE+ELAR++KLKC+ CGLKGA LGC  KSCRRSYH PCA +I  CRWD D+++M CP HK+VKFP E+SK RK A  +A   +API  ++ NFWA+S  G K+WVLCGSALS EEK  + KFA+ CGAT+ ++WNPNVTHVIA+ D  GA TRTLKVLMAIL G+W++T+DWIKAC   N PV EE YE  LD HGC+ GPK+GRL+   NAPKLF G  FY SGD+  AYK DL +LV   GGS++ TKEQL   +      +++ LVVYN+DP +     + ++V+L R   AE+LA + GCQV++H WIL+SIAAC L P 
Sbjct:    1 MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQCECPVCKHHYVNQEIRAVPHVESMIAIFRSLDATFNAKVFQLKSPDAGWSSEQSPVSVNADDKLRNEQSVKVIVSSNDPNEEINRCNGHGIPWNGVNHLSLLPSSDRKADLKNERNIAEEIDLNQLQQQSPGS---SHSSDNNKDIVKETSELRVRNNDIKSHTAKMSIEDSSLVVEGPVHHTIKHEHVFEERDVKRQKKLSYELSETVLQSHAIANSDCSIACKLSESSLVAQPKAVSNQHLPKGSVCALCHTSKITEGTGPMLHYANGKEVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDNLRNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPSHKSVKFPSEKSKSRKRASMEACPESAPITSERLNFWATSSDGPKEWVLCGSALSSEEKYMMVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIGANCPVIEEPYEVSLDNHGCFGGPKAGRLRASSNAPKLFDGFKFYLSGDYVAAYKKDLLDLVEKGGGSIIHTKEQLIYQIDSMNATNTSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDLAKQIGCQVIQHTWILQSIAACKLEPI 686    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FLF6 ((Breast cancer associated RING 1 {ECO:0000313|EMBL:GFY99548.1}))

HSP 1 Score: 499.204 bits (1284), Expect = 6.184e-167
Identity = 291/678 (42.92%), Postives = 387/678 (57.08%), Query Frame = 0
 
Query:    1 MAEECQSRRQLNPWLLHLQKLALELKCPLCCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLD---ATTVNTLFQAIPCGGE--------KKLNQSPVSVKISSVNGTKNKLNQVDA-------DGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLD-GSVFNADG-----RVANIQHPGTDGSVNPEVNKVEEID-----------MNQMGQLSPTCTDS----------------LGDMN-------DNSCDPASSRDAKRQKKSSSEHGGGETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGS-STTLVVYNVDP-VQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            MA+     R LNPW+LH QKL LELKCPLC C+   ++FGSECP C  +Y D +   AP  +S V +  ++D     +V T  +     GE         K  ++P++  I      K+  N +         DG  +    +P  A+         +  E+++L +  V   +P     K ++ +  D GS  N+ G     R+       T   V    +   E+D           M   G+ S  CT +                +G+++        +SCD + S  A  Q  + ++     TG M+HY NGK V G     SN I+ HKICI+WTPQ Y+ G+ ++NL++E+AR++KLKC++CGLKGA LGC  KSCR+SYH PCAI+I GCRWDF+D+LM CP H +VKFP E+ K RK    K   +   I  KQ N W +S  G ++WV CG+ALS EEK  L+KFAS CGAT+S+ W PNVTHVIA+ DA GA +RTLKVL AIL GRWV+  +WIKAC E  +PVDEE YE  LD HGC  GPK+GRL+ L N  KLF+ +NFYFSGDF P YK+DL +LV  AGG+V+K+KEQL   S   + + S TLVVYN DP +Q   +++  SVVLQR   AE LA   G  V+ H W+LESIAAC L PF
Sbjct:   25 MADASNHARFLNPWVLHHQKLGLELKCPLCFCVPRLSQFGSECPVCARRYEDLDEERAP-SQSPVLLNTNVDNRLKESVETPQEGNSSNGECTFSLTTSNKRVRAPLNYSIEEGKSDKSTPNVIGKAEEIKVCDGGKTKPPQYPGWARG--------AKPEDQVLQLSPV---SPPSFDTKGLDGDSSDPGSRNNSSGKDPAKRLHENNSCKTGDDVKESTSPGAEVDHARDAKRPKKSMCNTGEPSNGCTQANVFHSKSIATSKLEPRVGELSGKKAPTTPDSCDASDSICAFCQSFALTDR----TGPMLHYVNGKEVVGDAATNSNVIHAHKICIEWTPQAYFVGETVKNLKAEVARAAKLKCSSCGLKGAALGCLVKSCRKSYHVPCAIEIVGCRWDFEDFLMLCPSHSSVKFPCEKFKSRKHTSEKQHFMPNAITSKQTNVWRASANGEREWVFCGAALSTEEKYLLSKFASICGATVSKFWKPNVTHVIAATDAKGACSRTLKVLKAILKGRWVLKTEWIKACMEAMQPVDEEPYEVGLDNHGCHDGPKTGRLRALDNESKLFNDLNFYFSGDFVPGYKEDLLDLVITAGGTVIKSKEQLVAQSRDSRTTHSATLVVYNNDPAMQGGRLEEEGSVVLQRIEAAENLAIGIGSPVIAHTWLLESIAACKLQPF 686    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2Z7B2 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})

HSP 1 Score: 496.508 bits (1277), Expect = 9.906e-166
Identity = 282/696 (40.52%), Postives = 388/696 (55.75%), Query Frame = 0
 
Query:    9 RQLNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK------------ISSVNGTKNKLNQVDADGN--SSSGTFFPLLAKNCGRNVLNDSAEEEKM-LNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVAN-------------------------IQHPGTDGSVNPEVNKVEEIDMN----QMG--------QLSPTCTDSLGDMNDN-SCDPA-SSRDAKRQKKSSSEHGGGETGEMIHYANGKLVAGSVKPFSNG-------------IYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTT-LVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            R LNP   H+QKL LELKCPLC                   C+ +S +   ECP C+ +Y D+E+R+ P MES++SI+RSLD T    LFQ       + L QS VSV             I S N +  ++N+ +  G   +       L + N   ++ +D    E++ LN +  +S       D + ++   +  + +     A                          + H      V PE +   +  +N    +M         Q   +C+  + + + N +C  + SS  A  ++ S   H  G      H +      G ++ +S G             I VH  CIDW PQVYY+GD I+NLE+ELAR++KLKC+ CGLKGA LGC  KSCRRSYH PCA ++  CRWD D+++M CP HK+VKFP E+ K RK    +A    AP+  +++NFWA+   G K+W+LCGSALS E+K  L KFA+ CGAT+ +SW+P VTHVIA+ D  GA TRTLKVLMAIL G+W++T+DWIKAC + N PV+EE YE  LD HGC+ GPKSGRL+   +APKLF G+ FY SG++ PAYK DL +LV  AGGS++ T EQL +L+ A Q +S+  LVVYN DP +     + ++++LQR   AEELA   GCQV++H WILESIA C + PF
Sbjct:   11 RFLNPLAFHIQKLGLELKCPLCLNLLTKPRLLPCDHIFCNFCVPSSIQAQCECPICKHQYVDEEIRAVPHMESMISIFRSLDTTFNAKLFQFQSPDSGRSLEQSNVSVNADKSRIEQSIKAILSSNDSIKEINRHNGHGMPWNVVNQLGLLPSSNRKEDIKDDRYNAEEIDLNQLQQQSPGSAHSSDSNKDIVKENSELRDVKSHTAKRLVEDSSDVVPFLKKQDTPVVSKDLVHHTVMRDDVFPERDVKRQKKLNYGLPEMALQSYDGHNQQRESCSRIISNSDHNLTCKLSESSIVAYPEEVSDQHHLEGSVCAFCHQSKITEGTGPMQHYSKGREVVVDAASLSNAIPVHMKCIDWAPQVYYDGDIIKNLEAELARAAKLKCSVCGLKGAALGCLVKSCRRSYHRPCAFELQDCRWDCDNFVMLCPSHKSVKFPSEKPKSRKRTSTEACPEPAPLTSERSNFWATLSDGPKEWILCGSALSSEQKYMLVKFANMCGATVCKSWDPRVTHVIAATDEKGACTRTLKVLMAILSGKWILTIDWIKACIQENYPVNEEPYEVNLDNHGCFGGPKSGRLRASSSAPKLFDGLKFYLSGEYVPAYKTDLLDLVEKAGGSIIHTNEQLISLTDAMQATSSACLVVYNSDPPRGCAFGEASNILLQRQAKAEELAKPIGCQVIQHTWILESIATCKMVPF 706    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830B7G4 ((Protein breast cancer susceptibility 1 homolog {ECO:0000313|EMBL:GFP82946.1}))

HSP 1 Score: 494.582 bits (1272), Expect = 1.337e-165
Identity = 284/679 (41.83%), Postives = 378/679 (55.67%), Query Frame = 0
 
Query:    6 QSRRQLNPWLLHLQKLALELKCPLCCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNKVEEIDMNQMGQLSPTCTDSLGDMNDNSCDPASSRDAKRQKK--------------------SSSEHGGG----------ETGEMI--------HYANGKLVA-----------GSVKPFSNG-------------IYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAI-HKAE---SIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            ++ R LNPW+ H QKL LELKCPLC C+  S+ F ++CPSCQ  + DQE R A +ME+++++Y+SLD+T  + L   +P       N + +S+   SV+ T+ KL      G S       +     G         EE  +N                M       S  NA G  A   +PG+   +  +  ++  +       L      + G+M+D   D   +R+ KRQKK                    S ++   G          E   +I         Y NG   A           G +  ++NG             I VH  CI+WTPQVYY G+ I+NLESELAR+SKLKC+ CGLKGA LGCF KSCRRSYH PCA++  GCRWD D ++M CP HK++KFP E+SK RK     K E   S+   IA +Q NFW++S+ G ++WVLCGSALS ++KC L KFA+ CGAT+ + WNPNVTHVIAS D++GA +RTLKVLMAIL+GRW++TMDWIKAC E N  VDEE YE  LD HGC  G K+GRL+   NAPKLF G++FYF+GDF P+YK+DL  LV   GG ++++ E +       Q  STT VVYN D  Q  T  K  ++V +R   AE++A +   +V+ H WILESIAAC + P 
Sbjct:    3 EASRLLNPWVFHFQKLGLELKCPLCLCVPASSHFSTQCPSCQQHFTDQETRPAYYMENIIAMYKSLDSTFNSGL---LPLLSTDSGNLASISI---SVDQTRKKLTVTAPKGQSHHADGLLINHVASGSESTKCPVSEELDVN------------HAPEMSPRSSPSSGNNAKGAEAQKSNPGSKRGLPLQGKEIHRVKKPVGDNL----VTAAGEMDDK--DAFQTREPKRQKKLDYGVSDAVLQKHGYCQQIISHADQDAGSNCNEEFKSKEETPLIPSIAPCDASYVNGSACAFCHSSKITEGTGPLLHYANGKEVARGETVSSKAIPVHSKCIEWTPQVYYVGETIKNLESELARASKLKCSRCGLKGAALGCFAKSCRRSYHVPCAVETPGCRWDCDAFVMLCPAHKSIKFPSEKSKSRKRHTEQKCEQKCSVPIQIASEQLNFWSNSLNGPQEWVLCGSALSSQDKCLLVKFATMCGATVFKFWNPNVTHVIASTDSDGACSRTLKVLMAILNGRWILTMDWIKACVEANHYVDEEPYEVNLDNHGCCDGAKTGRLRASNNAPKLFHGLSFYFNGDFVPSYKNDLLELVRVGGGDIIESMEHITEQKHNQQPISTTYVVYNHDYPQGCTTAK-ETIVFERLAEAEDVAKDVNARVIPHTWILESIAACRVLPI 656    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2BPS8 ((Uncharacterized protein {ECO:0000313|EMBL:PNT51782.2}))

HSP 1 Score: 495.738 bits (1275), Expect = 2.472e-164
Identity = 288/721 (39.94%), Postives = 393/721 (54.51%), Query Frame = 0
 
Query:    6 QSRRQLNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPE---VNKVEEIDMNQMGQLSPTCTDSLGDMNDNSCDP-------------------ASSRDAKRQKKSSSEHGGGETGEM--------IHYANGKLVA---GSVKP--------------------------------------------FSNG-------------IYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            QS   +NPW+LHLQKL LELKCPLC                   C+  + +FGSECP C+++Y D ++R  P +E++V+IYRSLDA    ++ Q+    G   L Q P S    S +   NKL +     NSSSG    L+  +      N S  +    N+       P  V+DK     G+ GSV  A     N   P     V       +K  ++D+NQ  QLSP    S GD  D+  D                     +S + +RQ++ S+     E G +        ++Y+   L A   G +KP                                            F+NG             I+VH +CI+W PQVY+ G+ ++NL++ELAR +KLKC+ CGLKGA LGC+ KSC+RSYHAPCA++I+ CRWD++++L+ C  H +VKFP E+SK +K    K  S+   +AP+Q+NFW  S  G K WV CGSALS EEKC L KF S  G  +++ W  NVTHVIA+ D++GA TRTLK LMAIL+G+WV+T+DWIKAC E   PVDEE YE +LD HG   GPK+GRL  L NAPKLFSG++F F GDF   YK+ LQ+LV AAGG+++K++E+L          STTL+VYN+DP Q   + +  S++ QR   A++LA + G QV+ H W+LESI++  L PF
Sbjct:   70 QSVSSMNPWVLHLQKLGLELKCPLCLELLKRPFLLPCDHIFCNSCLPKTIQFGSECPLCKAQYGDSDLRCLPLVENMVTIYRSLDAAFSASILQSRSETG-GVLKQCPAS---KSSDSKDNKLVEAHWGNNSSSGQ-SKLMCNDVACAPSNCSVGKGVRKNVAMGNCNVPMHVKDKEY---GVIGSVGGASNDKQNANSPPVGSQVRARGLHESKAFQMDLNQADQLSPRSPPSFGDNKDSENDSNDQGGDDSLQNYKAENLVQLNSDNKRRQERHSTSASETEEGHLRDSKRHKKLNYSPSDLGANNIGHIKPNAPPTENLITSSQLEIPANLNNSFNDCGFCHSSRITADTGPMLHFANGKPVEGVEATLSDTIHVHAVCIEWAPQVYFVGETVKNLKAELARGAKLKCSKCGLKGAALGCYLKSCKRSYHAPCAMEITKCRWDYENFLVLCSAHSSVKFPSEKSKAKKHN-QKTSSVLTSVAPQQSNFWVGSCNGAKKWVFCGSALSSEEKCLLVKFGSMIGVPVNKFWASNVTHVIAATDSDGACTRTLKYLMAILNGKWVLTIDWIKACMESMHPVDEENYEIILDCHGSRDGPKNGRLSALNNAPKLFSGLSFCFVGDFVAGYKEGLQSLVIAAGGTLLKSEEELVEQRHEPLSPSTTLIVYNLDPPQGCKLGEEVSIIWQRTNEAQDLAAKVGSQVIGHTWLLESISSYKLQPF 781    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2RB46 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL09p040907:mrna}))

HSP 1 Score: 493.426 bits (1269), Expect = 2.546e-164
Identity = 291/719 (40.47%), Postives = 386/719 (53.69%), Query Frame = 0
 
Query:   11 LNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNP---EVNKVEEIDMNQMGQLSPTCTDSLGDM---NDNSCDPAS----------------------------------SRDAKRQKK-------------SSSEHGGGETGEM------------------------------------IHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYY-EGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPI--APKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPFF 619
            +NPWL H  KLALELKCPLC                   CI  S + GS+C  C++ Y ++++R+APF+E+LV+I+R L+AT  + LFQ +     + L Q   S+        K     V+   +SS  + F L A    +  LN +   E  ++           V  K     G +G  FN      N+  P     + P   E  +V EI+MNQ  Q  P    S  D    +D+SCD  S                                  SRD KRQKK             S SE       E+                                    +HYANGK V G     SN I+VH ICIDW PQVYY + + ++NL++E+AR +KLKC+ CG KGA LGC+ KSCR+SYH PCA +I+ CRWD +++LM CP H +V+FP E+ K  K  +   +    PI  A +Q+N W +   G K+WVLCGSALS EE+ +L KFAS CGAT+++ W PNVTHVIA+ DA GA TRTLKVLMAIL+GRW++ +DWIKAC E   PV+EE YE  LD HGC  GPK+GRL  L NAPKLF+G+ FYF+G F P Y++DL +LV  AGG+V+K+KE+L   SC GQ  +  LVVYN+DP Q   + +   ++ +R   A+++A   G QV+ H W+LESIAAC L P F
Sbjct:   21 INPWLFHYHKLALELKCPLCLNLLHKPMLLPCNHIFCNSCIPISAQVGSDCSVCKAHYFNKDLRTAPFIENLVTIFRGLEATYCSNLFQPVSSDSGRVLEQGQASLYTG-----KFSKESVEGVKSSSGQSVFSLTANKRVQVPLNLNCSVEDGVDKNDKFENHNSPVVGK----GGREGDKFNG---AVNMNPPSDSLPMRPGNHEECRVVEIEMNQGAQSLPDSPLSFSDAKGSDDDSCDRGSEHSPENSLSKGAINKNSEDRKRLLRSGNETEDGHSRDIKRQKKLNYGSSEFIPAVVSHSEISAAPNSELELESRVPPVAPQQAVSNKSICAFCQSSKVSETSGPMLHYANGKKVVGDEATRSNVIHVHTICIDWAPQVYYDDNENVKNLKAEVARGAKLKCSRCGKKGAALGCYMKSCRKSYHVPCAAEIANCRWDNENFLMLCPAHSSVRFPNEKPKSGKQVL---KDHPEPIQKATQQSNGWEAPSDGAKEWVLCGSALSTEERIHLVKFASMCGATVTKFWKPNVTHVIAATDAQGACTRTLKVLMAILNGRWILKIDWIKACMEAMHPVNEEPYEVGLDNHGCCDGPKTGRLLALNNAPKLFNGLKFYFTGGFVPEYEEDLCDLVMTAGGTVLKSKEELVPQSCDGQ--AKILVVYNLDPPQGSKVGEEVDILWKRLTEAQDVAANIGSQVIGHTWLLESIAACELQPLF 722    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9THD1 ((BRCA1-associated RING domain protein 1 {ECO:0000313|RefSeq:XP_011080094.1}))

HSP 1 Score: 485.723 bits (1249), Expect = 3.394e-162
Identity = 279/665 (41.95%), Postives = 380/665 (57.14%), Query Frame = 0
 
Query:    1 MAEECQSRRQLNPWLLHLQKLALELKCPLCC----------CIKTSTKF----GSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPG-TDGSV--NPEVNKVEEIDMNQMGQLSP-TCTDSLGDMNDNSC--DPAS----SRDAKRQKKSSSEHGGGETGEMIHYANGKL------------------------VAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHP 617
            M+E   + R LNPW+ HLQKL LELKCP+C           C      F      +CP+CQ  Y DQ++R A F++++V+IY+SLDAT  +T+   +        + +P+S+  +S++  + K ++    G +            C  +   D     +M    +  SA    ++D   ++N   GS  N   + +   + G   G V  N   +  E     ++   SP     S G      C  D A+    S + K ++ +S         E+  YANG +                        VA     FS  I VH  CI+W+PQVY+ G+ I+NLE+EL RSSKLKC++CGLKGA LGCF KSCRRSYH PCA++I  CRWD DD+LM CP+HKT+KFP E+S  RK    +  S+++ IA ++ NFW +S +G + WVLCGSALS EEKC + +FA  CGAT+ + WNPNVTHVIA+ D+ GA +RTLKVLMAIL+GRW++TMDWIKAC E N PVDEE YE  LD HGC  GP++GRL+   NAPKLF G++FYF+GDF P+YKDDL  LV   GG+++++ EQ        Q  STT VVY+ D  Q     + +S VL+R   AE +A +   QV+ H WILESIAAC + P
Sbjct:    1 MSEAQSATRLLNPWVFHLQKLGLELKCPICLDLLNKPVLLPCNHIFCNFCVPKSCQCPACQQHYTDQDIRYASFLDNIVTIYKSLDATFNSTILPLL-----SSDSSAPISIS-TSIDQLRKKPSETATRGKNDYSNAL----TKCSVSEELDVNHALEMSPGSSPSSADAKNIEDHTNDLNSRHGSTENHRVKKSFGDNLGAATGGVDSNDTFHAREPKRQKKLNYGSPEAALGSHGYRQQTICHSDQAAVSNFSAECKFKEDTSVISSLATCEEL--YANGSVCAFCHSSKITEGTGLLLHYAAGKEVARGEPDFSKAIPVHSKCIEWSPQVYFVGETIKNLEAELVRSSKLKCSSCGLKGAALGCFAKSCRRSYHVPCALEIPECRWDCDDFLMLCPIHKTIKFPSEKSSSRKRHSGEKCSLSSQIASERLNFWVTSPSGPQKWVLCGSALSSEEKCLMVEFAGICGATVFKFWNPNVTHVIAATDSIGACSRTLKVLMAILNGRWILTMDWIKACVEANGPVDEEPYEVNLDNHGCRNGPRNGRLRASNNAPKLFDGLSFYFNGDFVPSYKDDLLELVRVGGGTIIESTEQTVAQEPNPQMVSTTFVVYSHDHPQGCLATESSSFVLKRLAEAELVAKDMDAQVIPHTWILESIAACRVLP 653    
BLAST of DCAR_004683 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QEH1 ((Uncharacterized protein {ECO:0000313|EMBL:TKS07337.1}))

HSP 1 Score: 486.108 bits (1250), Expect = 2.244e-161
Identity = 289/721 (40.08%), Postives = 384/721 (53.26%), Query Frame = 0
 
Query:    6 QSRRQLNPWLLHLQKLALELKCPLCC------------------CIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPE---VNKVEEIDMNQMGQLSPTCTDSLGDMNDNSCDPASS----------------------------------------RDAKRQKK---SSSEHGGGETGEM-------------------------------IHYANGKLVAGSVKPFSNGIYVHKI-------------CIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 618
            QS   +NPW+LHLQKL LELKCPLC                   C+  + +FGSECP C+++Y D ++R  P +E++V+IYRSLDA    ++ Q+    G + L Q P S    S +    KL +     NSSSG    L+  +      N S  +    N+       P  V+DK     G+ GSV  A     N   P  D  V       +K  ++D+NQ  QLSP    S GD  D+  D                                            RD+KR KK   S S+ G    G +                                H +    V G +  F NG  V  +             CI+W PQVYY G+ ++NL +ELAR +KLKC+ CGLKGA LGC+ KSC+RSYHAPCA++I+ CRWD++++L+ C  H +VKFP E+SK +K    K  S+   +AP+Q+NFWA S  G K WV CGSALS EEK  L KF S     +S+ W  NVTHVIA+ D++GA TRTLK LMAIL+G+WV+T+DWIKAC E   PVDEE YE +LD+ G   GPK+GRL  L NAPKLFSG++F F GDF   YK+ LQ+LV AAGG+++K++E+L          STTL+VYN+DP Q   +D+  SV+ QR   A++LA + G QV+ H W+LESI++  L PF
Sbjct:    7 QSVSSMNPWVLHLQKLGLELKCPLCLELLKRPFLLPCDHIFCNSCLPKTLQFGSECPLCKAQYGDSDLRCLPLIENMVTIYRSLDAAFNASILQSRSETG-RVLKQCPAS---KSSDSKDMKLLEAHWGNNSSSGQ-SKLMNNDVACAPSNCSGGKGVRKNVAMGNCNVPMHVKDKEY---GVIGSVGGASNDKQNANSPPVDSQVRARGLHESKAFQMDLNQADQLSPRSPPSFGDNKDSENDSNDQGGDDSLQNYKAENLVQLNSDNKRRQERHNTSASETEEGHLRDSKRPKKLNYSPSDLGANNIGHIKPNAPPTENLITSSQLEIPAKSNNSFNACRFCHSSRITAVTGPMLHFVNGKPVEGVEATPSNTIHVHAVCIEWAPQVYYVGETVKNLNAELARGAKLKCSKCGLKGAALGCYLKSCKRSYHAPCAMEITKCRWDYENFLVLCSAHSSVKFPSEKSKAKKHN-QKTSSVLTSVAPQQSNFWAGSCNGAKKWVFCGSALSSEEKYLLVKFGSMIDVPVSKFWASNVTHVIAATDSDGACTRTLKYLMAILNGKWVLTIDWIKACMESMHPVDEENYEIILDSQGSRDGPKNGRLSALNNAPKLFSGLSFCFVGDFVAGYKEGLQSLVIAAGGTLLKSEEELVEQRHDLLSPSTTLIVYNLDPPQGCKLDEEVSVIWQRTNEAQDLAAKVGSQVIGHTWLLESISSYKLQPF 718    
Match NameStatsDescription
A0A1U7X560E-Value: 3.313e-179, PID: 43.81(protein BREAST CANCER SUSCEPTIBILITY 1 homolog {E... [more]
A0A1S4BX85E-Value: 3.737e-177, PID: 43.23(BRCA1-associated RING domain protein 1 {ECO:00003... [more]
A0A1J6JB20E-Value: 6.424e-177, PID: 43.69(Brca1-associated ring domain protein 1 {ECO:00003... [more]
A0A7J0FLF6E-Value: 6.184e-167, PID: 42.92(Breast cancer associated RING 1 {ECO:0000313|EMBL... [more]
A0A2G2Z7B2E-Value: 9.906e-166, PID: 40.52RING-type E3 ubiquitin transferase BRCA1 {ECO:0000... [more]
A0A830B7G4E-Value: 1.337e-165, PID: 41.83(Protein breast cancer susceptibility 1 homolog {E... [more]
A0A2K2BPS8E-Value: 2.472e-164, PID: 39.94(Uncharacterized protein {ECO:0000313|EMBL:PNT5178... [more]
A0A7N2RB46E-Value: 2.546e-164, PID: 40.47(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A6I9THD1E-Value: 3.394e-162, PID: 41.95(BRCA1-associated RING domain protein 1 {ECO:00003... [more]
A0A4U5QEH1E-Value: 2.244e-161, PID: 40.08(Uncharacterized protein {ECO:0000313|EMBL:TKS0733... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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