Resource Type:
Polypeptide
Name:
DCAR_013799
Identifier:
DCAR_013799.mRNA-protein
Sequence:
MAASATSASTWAKPKIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKY
QTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSH
PLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPH
FEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFP
KAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAM
SEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALT
YNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQ
VVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFH
LWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKS
TRRAIISPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDL
FNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSEL
QIVNAMTLELEATVKLPSRVPYGFHGTFPRFTRGIDHIFVPGNLRAVINT
NLLCHRSVLIVLVFICNDFMGSFEAAACSLGCR*
Sequence Length:
634
Sequence Checksum:
e8f3627aae2ac70f332806e40649ce21
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_013799, derives from mRNA, DCAR_013799. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 1203.35 bits (3112), Expect = 0.000e+0
Identity = 576/578 (99.65%), Postives = 576/578 (99.65%), Query Frame = 0
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 1203.35 bits (3112), Expect = 0.000e+0
Identity = 576/578 (99.65%), Postives = 576/578 (99.65%), Query Frame = 0
Query: 1 MAASATSASTWAKPKIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MAASATSASTWAKP IYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVN NKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF
Sbjct: 1 MAASATSASTWAKPNIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNINKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 1058.9 bits (2737), Expect = 0.000e+0
Identity = 506/577 (87.69%), Postives = 541/577 (93.76%), Query Frame = 0
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 1058.9 bits (2737), Expect = 0.000e+0
Identity = 506/577 (87.69%), Postives = 541/577 (93.76%), Query Frame = 0
Query: 9 STWAKPKIYSS--QRD-----SPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
+TWAKPKI +S QR+ + RK NVNC++QS PSILHFPKQS YQTP +PTTI QPKHQDSSSS +WNFLQKAASMALDAVEN+I ++E+ HPLPKTADPQVQI+GNFAPV EQPV+H LPVTGKIPECISGVYVRNGANPH EPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERLIQERNLG+ VFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHV+IT GDL+TV RY+FDGQLD+TMIAHPKIDP+T ELIAL+YNVIQKPYLKYFRVSPDGVKS DVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDK KVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWED+ESDEIVVIGSCMTPADSIFNECDEGL+SVLSEIRLNLKTGKSTR+ I+S EDQVNLEAGMVN+NKLGRKTQFAYLAIAEPWPKVSGFAKVDLF G+++KFFYGD+KYGGEPLFLP+NPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATV+LPSRVPYGFHGTF
Sbjct: 5 ATWAKPKILTSCPQREVKSQKAYRKNNVNCSLQS-PSILHFPKQSPHIYQTPCVPTTIAQPKHQDSSSSN--QWNFLQKAASMALDAVENVIAAREKEHPLPKTADPQVQIAGNFAPVPEQPVRHRLPVTGKIPECISGVYVRNGANPHLEPTAGHHFFDGDGMVHAVQFKEGAASYACRFTETERLIQERNLGKPVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVEITSSGDLKTVGRYNFDGQLDTTMIAHPKIDPDTKELIALSYNVIQKPYLKYFRVSPDGVKSDDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKNKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDEESDEIVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSTRKPIMSSEDQVNLEAGMVNKNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFTGQVQKFFYGDHKYGGEPLFLPKNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVQLPSRVPYGFHGTF 578
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 949.888 bits (2454), Expect = 0.000e+0
Identity = 459/599 (76.63%), Postives = 514/599 (85.81%), Query Frame = 0
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 949.888 bits (2454), Expect = 0.000e+0
Identity = 459/599 (76.63%), Postives = 514/599 (85.81%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN-----------VNCAIQSSPSILHFPKQSKQKYQTP---SIPTT-----IVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MA S+ + +TW KPKI S R+ +N + C++Q+ P ILHFPKQ YQTP +IPT+ I PK ++ SSS++P WN +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV LPVTGKIP+C++GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARG+FGLVDHS GTGVANAGLVYFNNRLLAMSEDDLPYHV++T GDL T R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDK KVSRFG+LDKYAKDGSG+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGLESVLSEIRLNLKTGKSTR+AII + E+QVNLEAGMVNRNKLGRKTQ+AYLAIAEPWPKVSGFAKVDLF GEI KFFYGDNKYGGEPLFLPR+PNS++EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF
Sbjct: 1 MATSSPATNTWIKPKISMPSSREFGHSSNSISLLKNKPNKITCSLQAPP-ILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSP-WNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVEFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKAIIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTF 597
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Y7N0 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_009797946.1}))
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 458/601 (76.21%), Postives = 517/601 (86.02%), Query Frame = 0
Match: A0A1U7Y7N0 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_009797946.1}))
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 458/601 (76.21%), Postives = 517/601 (86.02%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-------YSSQRDS-----PRKT--NVNCAIQSSPSILHFPKQSKQKYQTP-------SIPTTIVQPKHQDSSSSAT-PKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISP-EDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MA++ +++TW KPKI YSS S P + ++N ++Q+ P ILHFPKQS YQTP S PTTI PK +++SSS T P+WN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E PV H LPVTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFGLVDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+TV R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAIT+ +V+IPDQQVVFK+SEMI+GGSPVVYDK KVSRFGVLDKYAKDG G+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTRRAII EDQVNLEAGMVNRNKLGRKT+FAYLAIAEPWPKVSGFAKVDLF GE++KF YGDNK+GGEPLFLPR+PNS+ EDDGYILAF H+EK WKSELQIVNAMT++LEATVKLP+RVPYGFHGTF
Sbjct: 1 MASTTPASNTWIKPKISMPRDLAYSSNSISLVNKQPNRQLPSINSSLQAPP-ILHFPKQSPN-YQTPKTSTISTSKPTTISYPKQENNSSSTTHPQWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPENPVSHSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPTGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITDKYVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGVLDKYAKDGEGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRAIIQKEEDQVNLEAGMVNRNKLGRKTRFAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKFGGEPLFLPRDPNSKAEDDGYILAFAHNEKEWKSELQIVNAMTMKLEATVKLPTRVPYGFHGTF 599
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0N7CTG4 ((9-cis-epoxycarotenoid dioxygenase 3-2 {ECO:0000313|EMBL:AKO22634.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016510306.1}))
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 458/601 (76.21%), Postives = 517/601 (86.02%), Query Frame = 0
Match: A0A0N7CTG4 ((9-cis-epoxycarotenoid dioxygenase 3-2 {ECO:0000313|EMBL:AKO22634.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016510306.1}))
HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 458/601 (76.21%), Postives = 517/601 (86.02%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-------YSSQRDS-----PRKT--NVNCAIQSSPSILHFPKQSKQKYQTP-------SIPTTIVQPKHQDSSSSAT-PKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISP-EDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MA++ +++TW KPKI YSS S P + ++N ++Q+ P ILHFPKQS YQTP S PTTI PK +++SSS T P+WN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E PV H LPVTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFGLVDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+TV R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAIT+ +V+IPDQQVVFK+SEMI+GGSPVVYDK KVSRFGVLDKYAKDG G+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTRRAII EDQVNLEAGMVNRNKLGRKT+FAYLAIAEPWPKVSGFAKVDLF GE++KF YGDNK+GGEPLFLPR+PNS+ EDDGYILAF H+EK WKSELQIVNAMT++LEATVKLP+RVPYGFHGTF
Sbjct: 1 MASTTPASNTWIKPKISMPRDLAYSSNSISLVNKQPNRQLPSINSSLQAPP-ILHFPKQSPN-YQTPKTSTISTSKPTTISYPKQENNSSSTTHPQWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPENPVSHSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPTGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITDKYVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGVLDKYAKDGEGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRAIIQKEEDQVNLEAGMVNRNKLGRKTRFAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKFGGEPLFLPRDPNSKAEDDGYILAFAHNEKEWKSELQIVNAMTMKLEATVKLPTRVPYGFHGTF 599
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W5QL26 ((9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|EMBL:AFO85470.1}))
HSP 1 Score: 944.88 bits (2441), Expect = 0.000e+0
Identity = 456/599 (76.13%), Postives = 513/599 (85.64%), Query Frame = 0
Match: W5QL26 ((9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|EMBL:AFO85470.1}))
HSP 1 Score: 944.88 bits (2441), Expect = 0.000e+0
Identity = 456/599 (76.13%), Postives = 513/599 (85.64%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN-----------VNCAIQSSPSILHFPKQSKQKYQTP---SIPTT-----IVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MA S+ + +TW KPKI S R+ +N + C++Q+ P ILHFPKQ YQTP +IPT+ I PK ++ SSS++P N +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV LPVTGKIP+C++GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARG+FGLVDHS GTGVANAGLVYFNNRLLAMSEDDLPYHV++T GDL T R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDK KVSRFG+LDKYAKDGSG+KWVEVPDCFCFHLWNAWE+ E+DE+VVIGSCMTP DSIFNECDEGLESVLSEIRLNLKTGKSTR+A+I + E+QVNLEAGMVNRNKLGRKTQ+AYLAIAEPWPKVSGFAKVDLF GEI KFFYGDNKYGGEPLFLPR+PNS++EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF
Sbjct: 1 MATSSPATNTWIKPKISMPSSREFGHSSNSISLLKNKPNKITCSLQAPP-ILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSP-LNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDELVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKALIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTF 597
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7DVZ4 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87531.1}))
HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 458/599 (76.46%), Postives = 509/599 (84.97%), Query Frame = 0
Match: A0A0A7DVZ4 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87531.1}))
HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 458/599 (76.46%), Postives = 509/599 (84.97%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN-----------VNCAIQSSPSILHFPKQSKQKYQTP---SIPTT-----IVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MA S+ + +TW KPKI S R+ +N + C++Q+ P ILHFPKQ YQTP +IPT+ I PK ++ SSS++P WN +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV LPVTGKIP+C++GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL QE+ LGR VFPKAIGELHGHSGIARL LFYARG+FGLVDHS GTGVANAGLVYFNNRLLAMSEDDLPYHV++T GDL T R FDGQL STMI HPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI GGSPVVYDK KVSRFG+LDKYAKDGSG+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGLESVLSEIRLNLKTGKSTR+AII + E+QVNLEAGMVNRNKLGRKTQ+AYLAIAEPWPKVSGFAKVDLF GEI KFFYGDNKYGGEPLFLPR+PNS++EDDGYILAFVHDEK WKSELQIVNAMTL LEATVKLPSRVPYGFHGTF
Sbjct: 1 MATSSPATNTWIKPKISMPSSREFGHSSNSISLLKNKPNKITCSLQAPP-ILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSP-WNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLTQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRVDFDGQLKSTMIVHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMILGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKAIIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLRLEATVKLPSRVPYGFHGTF 597
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8F8J6 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016552564.1}))
HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0
Identity = 453/597 (75.88%), Postives = 508/597 (85.09%), Query Frame = 0
Match: A0A1U8F8J6 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016552564.1}))
HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0
Identity = 453/597 (75.88%), Postives = 508/597 (85.09%), Query Frame = 0
Query: 7 SASTWAKPKI---------YSS--------QRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSI-------PTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
+ +TW KPK+ +SS QR P N+NC++Q+ P +LHFPKQS YQTP PTT QPK +++++++T KWN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E+PV L VTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FKDG ASYACR+TETER +QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFG+VDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+T RY F+GQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S DG KS DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDKEKVSRFGVLDKYAKDGSG+KW+EVPDCFCFHLWNAWED++ DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTR+ II + E+QVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDL GE+ KF YGDNKYGGEPLFLPR+ +S+ EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF
Sbjct: 2 ATNTWIKPKLSMPSSKEFGFSSNSFPLIKNQRQIP---NINCSLQAPP-LLHFPKQSTTTYQTPKTNTISTPKPTTTSQPKQENNTNTSTCKWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPEKPVTQSLQVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKDGSASYACRFTETERFVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGIVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRYDFNGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKDGEKSDDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKEKVSRFGVLDKYAKDGSGLKWIEVPDCFCFHLWNAWEDEDCDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKTIIQNEEEQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLLTGEVHKFIYGDNKYGGEPLFLPRDSSSQAEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTF 594
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WEP9 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|EMBL:PHT43711.1}))
HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0
Identity = 453/597 (75.88%), Postives = 508/597 (85.09%), Query Frame = 0
Match: A0A2G2WEP9 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|EMBL:PHT43711.1}))
HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0
Identity = 453/597 (75.88%), Postives = 508/597 (85.09%), Query Frame = 0
Query: 7 SASTWAKPK---------IYSS--------QRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSI-------PTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
+ +TW KPK ++SS QR P N+NC++Q+ P +LHFPKQS YQTP PTT QPK +++++++T KWN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E+PV L VTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FKDG ASYACR+TETER +QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFG+VDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+T R+ F+GQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S DG KS DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDKEKVSRFGVLDKYAKDGSG+KW+EVPDCFCFHLWNAWED++ DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTR+ II + E+QVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDL GE+ KF YGDNKYGGEPLFLPR+ NS+ EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF
Sbjct: 2 ATNTWIKPKLSMPSSKEFVFSSNSFPLIKNQRQIP---NINCSLQAPP-LLHFPKQSTTTYQTPKTNTISTPKPTTTSQPKQENNTNTSTCKWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPEKPVTQSLQVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKDGSASYACRFTETERFVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGIVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRFDFNGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKDGEKSDDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKEKVSRFGVLDKYAKDGSGLKWIEVPDCFCFHLWNAWEDEDCDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKTIIQNEEEQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLLTGEVHKFIYGDNKYGGEPLFLPRDSNSQAEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTF 594
BLAST of DCAR_013799 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0N7CUA2 ((9-cis-epoxycarotenoid dioxygenase 3-1 {ECO:0000313|EMBL:AKO22633.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016478117.1}))
HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0
Identity = 457/605 (75.54%), Postives = 517/605 (85.45%), Query Frame = 0
Match: A0A0N7CUA2 ((9-cis-epoxycarotenoid dioxygenase 3-1 {ECO:0000313|EMBL:AKO22633.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016478117.1}))
HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0
Identity = 457/605 (75.54%), Postives = 517/605 (85.45%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN---------------VNCAIQSSPSILHFPKQSKQKYQTP-------SIPTTIVQPKHQDSSSSAT---PKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISP-EDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF 578
MA++ +++TW KPK+ S RD +N +N ++Q+ P ILHFPKQS YQTP S PTTI PK + ++SS++ P+WN +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV H LPVTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFGLVDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+TV R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FV+IPDQQVVFK+SEMI+GGSPVVYDK KVSRFGVLDKYAKDG G+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTRRAII EDQVNLEAGMVNRNKLGRKT+FAYLAIAEPWPKVSGFAKVDLF GE++KF YGDNK+GGEPLFLPR+PNS+ EDDGYILAFVH+EK WKSELQIVNAMT++LEATVKLP+RVPYGFHGTF
Sbjct: 1 MASTTPASNTWIKPKLSMPSSRDLAYSSNSISLVKKQPNRQLPSINSSLQAPP-ILHFPKQSPN-YQTPKTTTIPTSKPTTISYPKQESTNSSSSTTSPQWNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVSHSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSRGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPTGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGVLDKYAKDGEGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRAIIQKEEDQVNLEAGMVNRNKLGRKTRFAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKFGGEPLFLPRDPNSKAEDDGYILAFVHNEKEWKSELQIVNAMTMKLEATVKLPTRVPYGFHGTF 603
| Match Name | Stats | Description |
|---|---|---|
| Q2VEW8 | E-Value: 0.000e+0, PID: 99.65 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| Q2VEW9 | E-Value: 0.000e+0, PID: 87.69 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| A0A0A7DW45 | E-Value: 0.000e+0, PID: 76.63 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
| A0A1U7Y7N0 | E-Value: 0.000e+0, PID: 76.21 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A0N7CTG4 | E-Value: 0.000e+0, PID: 76.21 | (9-cis-epoxycarotenoid dioxygenase 3-2 {ECO:000031... [more] |
| W5QL26 | E-Value: 0.000e+0, PID: 76.13 | (9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|E... [more] |
| A0A0A7DVZ4 | E-Value: 0.000e+0, PID: 76.46 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
| A0A1U8F8J6 | E-Value: 0.000e+0, PID: 75.88 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A2G2WEP9 | E-Value: 0.000e+0, PID: 75.88 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A0N7CUA2 | E-Value: 0.000e+0, PID: 75.54 | (9-cis-epoxycarotenoid dioxygenase 3-1 {ECO:000031... [more] |
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| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |