MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLI
EPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAI
AVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFH
FNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRD
IKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFT
HGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKL
VDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDK
ERWKLPFEEKEEEEDEFWGFEDLEYDECNSSSTSLQDDCPLVLGDAI*
| Relationships |
|---|
| The polypeptide, DCAR_009917, derives from mRNA, DCAR_009917. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A103U2R6 ((Concanavalin A-like lectin/glucanase, subgroup {ECO:0000313|EMBL:KVH27900.1}))
HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 284/389 (73.01%), Postives = 317/389 (81.49%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSSSTS--LQD 387
MRYIRTGSFK+ F R+S +EC + + ++ NG+ E + P TWK F F EI+ ATNGF S+N+VGKGGYAEVY+G LE+G IAVKRLT++S DERKEKEFL+EIGTLGHVNHPNVSSLLGCC DNGLYLIF F+ KGSVASLLHDEN MDW +RYKIA+GTA GLHYLH+VCPRRIIHRDIK SN+LVT DFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYF HGVVDEKTDVFAFGVFLLEI+SGKK VDGSHQSLH WAKPILNQG EK+VD RL AYD Q +RLAFAASLCIRASS RPTMSEVL+VM +E EIDK RWK+P +EK EE DEFWGFEDLE++ C+SS+ S LQD
Sbjct: 1 MRYIRTGSFKRLFSMKRQSLEDLPKEC--IFMKQEEAYNNGE-------TESFKKP--TWKCFSFEEIYVATNGFCSENMVGKGGYAEVYKGVLEDGQTIAVKRLTQISCDERKEKEFLTEIGTLGHVNHPNVSSLLGCCIDNGLYLIFQFSSKGSVASLLHDENLSIMDWNTRYKIAIGTARGLHYLHKVCPRRIIHRDIKASNVLVTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEILSGKKSVDGSHQSLHGWAKPILNQGEVEKIVDPRLEGAYDFSQLSRLAFAASLCIRASSTWRPTMSEVLEVMFEE-EIDKNRWKMP-DEKLEEHDEFWGFEDLEFESCDSSTFSVFLQD 376
Match: A0A2J6LJH7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 285/392 (72.70%), Postives = 315/392 (80.36%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSS-----STSLQD 387
MRYIRTGSFK+ F R S +EC V NG+ E + P TWK F F EI+ ATNGFSS+N+VGKGGYAEVY+G LE+G IAVKRLT+ S DERKEKEFL+EIGTLGHVNHPNVSSLLGCC D+GLYLIF F+ KGSVASLLHDEN P MDW +RYKIA+G+A GLHYLH+VCPRRIIHRDIK SN+LVT DFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYF HGVVDEKTDVFAFGVFLLEI+SGKK VDGSHQSLH WA+PILNQG EK+VDSRL YD Q NR+AFAASLCIRASS RPTMSEVL+VM++E EIDK +WK+P EEK EE DEFWGFEDLE++ C+SS S SLQD
Sbjct: 1 MRYIRTGSFKRLFSMKRHSLEDLPKEC---IFVKQDSFNNGE-------TESFKKP--TWKCFSFEEIYVATNGFSSENMVGKGGYAEVYKGVLEDGQTIAVKRLTQTSCDERKEKEFLTEIGTLGHVNHPNVSSLLGCCIDSGLYLIFQFSSKGSVASLLHDENLPVMDWNTRYKIAIGSAKGLHYLHKVCPRRIIHRDIKASNVLVTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEILSGKKSVDGSHQSLHGWARPILNQGEVEKIVDSRLEGKYDYLQLNRIAFAASLCIRASSTWRPTMSEVLEVMIEE-EIDKSKWKMPDEEK-EEHDEFWGFEDLEFESCDSSRESTFSASLQD 378
Match: A0A5B6YQW8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 288/388 (74.23%), Postives = 325/388 (83.76%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSS-STSLQD 387
MRYIR GSFK+ F SI++ RSFDE+ + + +N+ +++ L E Q P TWK F + EIF ATNGFSSDNLVGKGGYAEVYRG LE+G AIAVKRLTK SNDERKEKEFL+EIG LGHV HPNV+ LLGCC DNGLYLIF F+ +GSVAS+LHDEN TMDWK+RYKIAVGTA GLHYLH+ CPRRIIHRDIKT+NIL+TA+FEPQISDFGLAKWLPSQWTHHSI PIEGTFGHLAPEYF HG+VDEKTD+FAFGVFLLE++SGKKPVDGSHQSLHSWAKPILNQG EKLVD RL +YDV Q +RLAFAASLCIRASS RPTM+EVL+VMV E E+DKERWK+P E EE+++EFWGFEDLE EC+SS STS D
Sbjct: 1 MRYIRPGSFKRLF-SIKR-RSFDEKLPKESYSTEEDKNETCEIV---PLTESPQRP--TWKCFSYEEIFDATNGFSSDNLVGKGGYAEVYRGILEDGQAIAVKRLTKASNDERKEKEFLTEIGALGHVCHPNVTLLLGCCIDNGLYLIFQFSSRGSVASVLHDENLQTMDWKTRYKIAVGTARGLHYLHKGCPRRIIHRDIKTTNILLTAEFEPQISDFGLAKWLPSQWTHHSIIPIEGTFGHLAPEYFMHGIVDEKTDIFAFGVFLLEMISGKKPVDGSHQSLHSWAKPILNQGEIEKLVDPRLGGSYDVTQLSRLAFAASLCIRASSTWRPTMTEVLEVMV-ENEMDKERWKMPGE--EEKQEEFWGFEDLEC-ECDSSFSTSPHD 377
Match: A0A6S7P6M9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0
Identity = 284/392 (72.45%), Postives = 316/392 (80.61%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSS-----STSLQD 387
M+YIRTGSFK+ F R S +EC ++ Q++ N + F + TWK F F EI+ ATNGFSS+N+VGKGGYAEVY+G LE+G IAVKRLT+ S DERKEKEFL+EIGTLGHVNHPNVSSLLGCC D+GLYLIF F+ KGSVASLLHDEN P MDW +RYKIA+G+A GLHYLH+VCPRRIIHRDIK SNILVT DFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYF HGVVDEKTDVFAFGVFLLEI+SGKK VDGSHQSLH WA+PILNQG EK+VDSRL YD Q +RLAFAASLCIRASS RPTMSEVL+VM +E EIDK RWK+P EEK EE DEFWGFEDLE++ C+SS S SLQD
Sbjct: 1 MKYIRTGSFKRLFSMKRHSLEDLPKEC----ILMKQDSFNNGETESFK--------KPTWKCFSFEEIYVATNGFSSENMVGKGGYAEVYKGVLEDGQTIAVKRLTQTSCDERKEKEFLTEIGTLGHVNHPNVSSLLGCCIDSGLYLIFQFSSKGSVASLLHDENLPVMDWNTRYKIAIGSAKGLHYLHKVCPRRIIHRDIKASNILVTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEILSGKKSVDGSHQSLHGWARPILNQGEVEKIVDSRLEGKYDYLQLSRLAFAASLCIRASSTWRPTMSEVLEVMFEE-EIDKNRWKMPDEEK-EEHDEFWGFEDLEFESCDSSRESTFSASLQD 378
Match: A0A5B6YQ83 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 290/389 (74.55%), Postives = 321/389 (82.52%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQ-ENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSS-STSLQD 387
MRYIRTGSFK+ F SI++ RSF + V SD E N + +K + EPSQ R TWK + EI ATN FSSDNLVGKGGYAEVYRG LE+G AIAVKRLTK +DERKEKEFL+EIGTL HV HPNV+SLLGCC D+GLYLIF F+ +GSVASLLHDEN PTMDWK+RYKIAVGTA GLHYLH+ CPRRIIHRDIK +NIL+TAD EPQISDFGLAKWLPSQWTH SI PIEGTFGHLAPEYF HG+VDEKTDVFAFGVF+LEI+SGKKPVDGSHQSLHSWAKPILNQG EKLVD RL +YDV Q +RLAFAASLCIRASS RPTMSEVL+VMV E E+DKERWK+P E EE+++EFWGFEDLE EC+SS STS D
Sbjct: 1 MRYIRTGSFKRLF-SIKR-RSFGGE----VPKESDSTEEDNNETVKIVPISEPSQ--RLTWKCLSYEEISDATNDFSSDNLVGKGGYAEVYRGRLEDGQAIAVKRLTKACSDERKEKEFLTEIGTLSHVCHPNVTSLLGCCIDSGLYLIFQFSSRGSVASLLHDENLPTMDWKTRYKIAVGTARGLHYLHKGCPRRIIHRDIKATNILLTADLEPQISDFGLAKWLPSQWTHRSIIPIEGTFGHLAPEYFMHGIVDEKTDVFAFGVFVLEIISGKKPVDGSHQSLHSWAKPILNQGEIEKLVDPRLGGSYDVTQLSRLAFAASLCIRASSTWRPTMSEVLEVMV-ENEMDKERWKMPGE--EEKQEEFWGFEDLEC-ECDSSFSTSPHD 377
Match: A0A251UPX7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 558.14 bits (1437), Expect = 0.000e+0
Identity = 277/389 (71.21%), Postives = 315/389 (80.98%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYD--ECNSSSTSLQD 387
MRYIRTGSFK+ F R+S ++C + QE+ F E + TWK F F EI+ ATNGF S+N+VGKGGYAEVY+G LE+G AIAVKRLT++S DERKEKEFL+EIGTLGHVNHPNVSSLLGCC DNGLYLIF F+ KGSVASLLHDE+ P MDW +RYKIA+GTA GLHYLH+VCPRRIIHRDIK SN+LVT DFEPQISDFGLAKWLPSQW+HHSIAPIEGTFGHLAPEYF HGVVDEKTDVFAFGVFLLEI+SGKK VDGSHQSLH WAKPILN+G EK+VD RL YD+ Q NRLAFAASLCIRASS RPTMSE+L VMV E E+DK WK+P +E+ EE+D+FWGFEDLE++ + ++SS SLQD
Sbjct: 1 MRYIRTGSFKRLFSMKRQSLEDLPKDC----IFMKQES--------FKDAETESCKKPTWKCFSFEEIYVATNGFCSENMVGKGGYAEVYKGVLEDGQAIAVKRLTQISCDERKEKEFLTEIGTLGHVNHPNVSSLLGCCIDNGLYLIFQFSSKGSVASLLHDEDLPVMDWNTRYKIAIGTAQGLHYLHKVCPRRIIHRDIKASNVLVTKDFEPQISDFGLAKWLPSQWSHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEILSGKKSVDGSHQSLHGWAKPILNEGEVEKIVDPRLEGEYDLSQLNRLAFAASLCIRASSTWRPTMSEILDVMVSE-ELDKSPWKMP-DEETEEQDDFWGFEDLEFEFYDSSTSSPSLQD 375
Match: A0A5N6M2K7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 277/390 (71.03%), Postives = 313/390 (80.26%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFW-GFEDLEYDECNS--SSTSLQD 387
MRYIRTGS K+ F R+S +EC ++ Q++ N + F + TWK F F EI+ ATNGF S+N+ GKGGYAEVY+G LE+G AIAVKRLT++S DERKEKEFL+EIGTLGHVNHPNVSSLLGCC DNGLYLIF F+ KGSVASLLHDEN P MDW +RYKIA+GTA GLHYLH+VCPRRIIHRDIK SN+LVT DFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYF HGVVDEKTDVFAFGVFLLEI+SGKK VDGSHQSLH WAKPILNQG EK+VD RL YD+ Q NRL FAASLCIRASS RPTMSE+L V+ +E E+DK +WK+P +E EE+DE W GFEDLE++ C+S SS SLQD
Sbjct: 1 MRYIRTGSLKRLFSMKRQSLEDLPKEC----ILMKQDSFNNGETESFK--------KPTWKCFSFEEIYVATNGFCSENMAGKGGYAEVYKGVLEDGQAIAVKRLTQMSCDERKEKEFLTEIGTLGHVNHPNVSSLLGCCLDNGLYLIFQFSSKGSVASLLHDENLPVMDWNTRYKIAIGTARGLHYLHKVCPRRIIHRDIKASNVLVTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEILSGKKSVDGSHQSLHGWAKPILNQGEVEKIVDPRLEGEYDLSQLNRLGFAASLCIRASSTWRPTMSEILDVLFEE-ELDKNQWKIPDDESAEEQDELWGGFEDLEFEFCDSSASSPSLQD 377
Match: A0A5B6YPS2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 273/356 (76.69%), Postives = 305/356 (85.67%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLP 356
MRYIRTGSFK+FF SI++ RSFDE+ + + +N+ +++ L E Q P TWK F + EIF ATNGFSSDNLVGKGGYAEVYRG LE+G AIAVKRLTK SNDERKEKEFL+EIG LGHV HPNV+ LLGCC DNGLYLIF F+ +GSVAS+LHDEN TMDWK+RYKIAVGTA GLHYLH+ CPRRIIHRDIKT+NIL+TA+FEPQISDFGLAKWLPSQWTHHSI PIEGTFGHLAPEYF HG+VDEKTD+FAFGVFLLE++SGKKPVDGSHQSLHSWAKPILNQG EKLVD RL AYDV QFNR+AF+ASLCIRASS RPTMSEVL+VMV EGE+DKERWK+P
Sbjct: 1 MRYIRTGSFKRFF-SIKR-RSFDEKLPKESYSTEEDKNETCEIV---PLTESPQRP--TWKCFSYEEIFDATNGFSSDNLVGKGGYAEVYRGRLEDGQAIAVKRLTKASNDERKEKEFLTEIGALGHVCHPNVTLLLGCCIDNGLYLIFQFSSRGSVASVLHDENLQTMDWKTRYKIAVGTARGLHYLHKGCPRRIIHRDIKTTNILLTAEFEPQISDFGLAKWLPSQWTHHSIIPIEGTFGHLAPEYFMHGIVDEKTDIFAFGVFLLEMISGKKPVDGSHQSLHSWAKPILNQGEIEKLVDPRLGGAYDVTQFNRVAFSASLCIRASSTWRPTMSEVLEVMV-EGEMDKERWKMP 348
Match: M5XRW5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 276/385 (71.69%), Postives = 312/385 (81.04%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPSQSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSSSTSL 385
M+YIRT S K+ F K RS +E SL + +N K+ E SP+ TWK F + EI ATNGFSS+NLVGKGGYAEVYRG L++G IAVKRLTK DERKEKEFL+EIGT+GHV HPNV SL+GCC DNGLYLIFHF+ KGSVASLLHDE+ P MDWK+RYKI++GTA GLHYLH+ C RRIIHRDIK++NIL+T DFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEY+ HG+VDEKTDVFAFGV LLE++SG+KPVDGSHQSLHSWAKPILNQG EKLVD RLR AYDV + RLAFA SLCIRAS RPTM+EVL+VM EG+IDKERWK+P EEK E+DEFWGFEDLEY ECN+SS S+
Sbjct: 1 MKYIRTNSLKRLFS--LKWRSLEEA----TSLNGSKGEENNGSFKNVE--EAELSPKPTWKCFSYEEISDATNGFSSENLVGKGGYAEVYRGILKDGEEIAVKRLTKAVTDERKEKEFLNEIGTIGHVCHPNVLSLVGCCIDNGLYLIFHFSSKGSVASLLHDEDLPPMDWKTRYKISIGTARGLHYLHKGCQRRIIHRDIKSTNILLTPDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVILLELISGRKPVDGSHQSLHSWAKPILNQGEIEKLVDPRLRGAYDVTELKRLAFAGSLCIRASPTWRPTMTEVLEVMGSEGDIDKERWKMPEEEK--EQDEFWGFEDLEY-ECNNSSFSI 374
Match: A0A5A7R3H5 ((Protein kinase family protein {ECO:0000313|EMBL:GER52019.1}))
HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 268/384 (69.79%), Postives = 311/384 (80.99%), Query Frame = 0
Query: 1 MRYIRTGSFKKFFHSIRKSRSFDEQECQRVSLVSDQENKNGDLIKDFSLIEPS-QSPRCTWKSFCFNEIFRATNGFSSDNLVGKGGYAEVYRGELENGVAIAVKRLTKLSNDERKEKEFLSEIGTLGHVNHPNVSSLLGCCTDNGLYLIFHFNPKGSVASLLHDENSPTMDWKSRYKIAVGTALGLHYLHEVCPRRIIHRDIKTSNILVTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYFTHGVVDEKTDVFAFGVFLLEIMSGKKPVDGSHQSLHSWAKPILNQGNNEKLVDSRLRDAYDVKQFNRLAFAASLCIRASSVGRPTMSEVLKVMVKEGEIDKERWKLPFEEKEEEEDEFWGFEDLEYDECNSSST 383
MRYIRT SFK+ F K SFDE + + S E I+P+ Q + TWK F + EIF ATNGFSSDN+VGKGGYAEVYRG LE+G AIAVKRLTK +NDERKEKEFL+EIGTLGHV+HPNV+SLLGCC DNGLYLIF F+ +GSVASLLHDE P MDWK+R+KIA+G A GLHYLH+ CPRRIIHRDIK SNIL+ ADFEPQISDFGLAKWLPSQW+HHSIAPIEGTFGHLAPEYF HGVVDEKTDVFAFGVFLLEI+SGKKPVDGSHQSLH WAKPIL +G+ ++++D +L + YD + +RLAF ASLCIRAS + RPTMSEVL+V+ E EID+ +WK+P E+EE+ED FWGFEDLEYD C+ S++
Sbjct: 1 MRYIRTASFKRLFS--LKRHSFDEDLHKDIEYSSSSEE-----------IKPNGQFQKPTWKCFSYEEIFSATNGFSSDNMVGKGGYAEVYRGVLEDGQAIAVKRLTKTANDERKEKEFLTEIGTLGHVSHPNVTSLLGCCIDNGLYLIFQFSSRGSVASLLHDEKMPPMDWKTRFKIALGAAKGLHYLHKTCPRRIIHRDIKASNILLAADFEPQISDFGLAKWLPSQWSHHSIAPIEGTFGHLAPEYFMHGVVDEKTDVFAFGVFLLEILSGKKPVDGSHQSLHKWAKPILEKGDAKQVIDPQLGEDYDSNELDRLAFVASLCIRASPIWRPTMSEVLEVIKGEEEIDRVKWKMP--EEEEDEDNFWGFEDLEYDTCSFSNS 369
| Match Name | Stats | Description |
|---|---|---|
| A0A103U2R6 | E-Value: 0.000e+0, PID: 73.01 | (Concanavalin A-like lectin/glucanase, subgroup {E... [more] |
| A0A2J6LJH7 | E-Value: 0.000e+0, PID: 72.70 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B6YQW8 | E-Value: 0.000e+0, PID: 74.23 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6S7P6M9 | E-Value: 0.000e+0, PID: 72.45 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B6YQ83 | E-Value: 0.000e+0, PID: 74.55 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A251UPX7 | E-Value: 0.000e+0, PID: 71.21 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5N6M2K7 | E-Value: 0.000e+0, PID: 71.03 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B6YPS2 | E-Value: 0.000e+0, PID: 76.69 | Protein kinase domain-containing protein {ECO:0000... [more] |
| M5XRW5 | E-Value: 0.000e+0, PID: 71.69 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5A7R3H5 | E-Value: 0.000e+0, PID: 69.79 | (Protein kinase family protein {ECO:0000313|EMBL:G... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |