DCAR_009054

Resource Type: 
Polypeptide
Name: 
DCAR_009054
Identifier: 
DCAR_009054.mRNA-protein
Sequence: 
MTSSPNASSWLPWIWALETLAYNHADSSLLIDLMKLIPDNVVDNGGNVAK
ESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHEL
SESEMLRLDVDTGLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCSDGV
TKRLPEGSNCDAAENPKVRDLSSGKRGINDLTTANEGMVSACRELIVYNA
YPDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDG
SNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDIL
LETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLG
FAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFKNRLRNSD
ISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCD
LSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCK
AYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVP
DSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQH
IPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQ
IFEKHRTAIDLKDKWRNMCKASPVV*
Sequence Length: 
676
Sequence Checksum: 
7edbfbcba51ea9c4be66eac7285351ed
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_009054, derives from mRNA, DCAR_009054.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H3N9 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})

HSP 1 Score: 256.914 bits (655), Expect = 1.193e-72
Identity = 241/794 (30.35%), Postives = 352/794 (44.33%), Query Frame = 0
 
Query:    7 ASSWLPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDS------LKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDTGL-------PKCTLRKLKDMILKDSHLLPSYLKERSGLL------------------------KCSDGVTKR------LPEGSNCDAA--ENPKVRDLSSGKRGINDLTTANEGMVSACRELIVYNAY-PDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNL-------------------------------DSEPWAKSFHG---DMPSENVDDNHR--REILSSDDIDHDENDDSI--------AREDIL---LETQNSDS---QDSLANVNGTKEQL----------------------CMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISG---RGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETI--GSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            +SS LPW+W +E LA +   D+S+LIDL+K  P  + D+ G  A+E   LRILE F   + G   G S      ++ DS+      ++ +  E S  N ++   EML+ DV   +       PK TL++LKD IL+ +H + + LKE+SGL                         K SD  T         P   N D    E+   RDL   KR  +DL T N+   S    + + N   P +  A K K D  CT + + G  S     N   ED+S      + R+GS L                               D+ P   S  G    +P     D+ +   E+ +S+    DE   SI        A++D++   ++  +SDS   QD   +V   K                         CM C  G QLLVCSS +C  VVH+RCL  AP+FD   +FYCPFCAY  A+S+Y + KK+ +L +  L +F   +N  R + +     R ++N +R  +  +   + N   N V+ VN  Q    +  K      +S           GN++ ++   T+  G+    Q   E+       D  +C+    +   +K LA   K Q+VLQQP        +  QK A         P++D        ND +T ++                     S  ++++E+   YP++PQ RRKK+PW+ AEE  LKEGV RF+S  +RT+PWKRILEFG  +F+K RT+IDLKDKWRN+CK SP
Sbjct:    4 SSSTLPWLWVIEALASFKEVDASILIDLVKRTP-AISDDLGKSAREMVSLRILESFFAQQTGSTKGVSSAPDSKIEFDSSYRCEDVVRQILHEISASNLKMDGPEMLKWDVQNFIKHKRACFPKSTLQQLKDAILEGNHRILASLKEKSGLSIGNQSENRITVDDDDLNAVPGRLEKSSDSATMEAGGNLTAPTAENLDGLLREDSPNRDLLPSKRDRSDLDTENQSAKSNEDLINMDNGCDPRLHNAKKLKRDAACTSEAV-GQKSVPIIGNELSEDSSRRDGENTVREGSELAILSQVGGSEENRFSENNHDQRTNPQISCNNDTVPLGTSGDGPDCGLPVNGAKDDGKDCAEMGTSNAAPPDETHQSICVDEARDNAKDDMVHNPIQEMSSDSDGYQDEKVDVAMEKRTFLNSQCTFSVDSLATADCTELTLCMKCNEGGQLLVCSSSTCPLVVHQRCLSSAPSFDDSGKFYCPFCAYSHAISKYFEVKKKASLARKDLAAFIGLENGHRANKLCKRFLRPEQNQLRRDDNVNGNNQTNYNGNHVNEVNSSQYRENVEAKQQAEPSVSG--------FNGNLSCREGGVTVNDGTLAETQQIDERSGSKLHEDNPSCRDA-EIVDVTKILAGDGKQQEVLQQP------ITDSTQKAAC-------PPNADAEESSEEEND-KTSSN--------------------YSRSLRRKEKKYTYPAIPQLRRKKLPWTAAEEVILKEGVNRFSSVQDRTIPWKRILEFGVDVFQKGRTSIDLKDKWRNICKGSP 752    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AGL5 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})

HSP 1 Score: 224.557 bits (571), Expect = 1.503e-60
Identity = 157/446 (35.20%), Postives = 223/446 (50.00%), Query Frame = 0
 
Query:  249 DGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISGR--GDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSV----SC-DLSSRVGERDVTC-GGNMA----DKQNAETIGSSVYCQSTKE--------QVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKA 671
            +G+  D   W K    D   ++++ N   E+ S+ D  +DE  D   ++   L +Q + SQDSLA  + T+  LCM C    QLLVCS+ SC  VVHE CLG A  FD    FYCPFCAY RA+ +Y + KK+ +L +  L +F    N  +   +S R    RNH+R     D   E    EN V++VN  Q    + +K       SC +++   GE+ +T   G +     D Q  E +G    CQS +         QV      D  +C+    +H   +  A V   Q VLQQP        +   K A +       P+ D        ND  T ++                     S+  +K+E+   YP++PQ RRKKVPW+  EEE LKEGVRRF+S ++R++PWK+ILEFG+ +F+K RT IDLKDKWRN+C++
Sbjct:  413 NGAPPDGSHWEK--FADKAKDDMEHNGELEMSSNSDEYNDEKIDVAMKKHSFLSSQCAQSQDSLATADLTELNLCMKCNKSGQLLVCSTSSCPLVVHENCLGSAAIFDDGGNFYCPFCAYSRAILKYLEVKKKASLARKELAAFIGLGNEHQPKKLSKRLRSGRNHLRQDGGVDGNNEAKEFENHVNKVNNPQWRTNIEDKRQAEPLASCVNVNLPCGEQGITVINGPLCALPEDNQEGEKMGQDQECQSARVLEGQDIEIQVDHRNGGDNSSCRDTEIVHARERH-AEVGVQQDVLQQP------ITDSPHKAACQ-------PNIDAEESSEEDNDNSTASNY--------------------SIRFRKREKQYTYPAIPQLRRKKVPWTQVEEEILKEGVRRFSSIHDRSIPWKKILEFGSNVFQKGRTTIDLKDKWRNICRS 822    

HSP 2 Score: 113.62 bits (283), Expect = 2.056e-23
Identity = 109/326 (33.44%), Postives = 152/326 (46.63%), Query Frame = 0
 
Query:    1 MTSSPNASSWLPWIWALETLAYN-HADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGSLK---LLRKEC---SGRNHELSESEMLRLDVD-------TGLPKCTLRKLKDMILKDSHLLPSYLKERSGL---------LKCSDG----VTKRLPEGSNCDA---------------------AENPKVRDLSSGKRGINDLTTANEGMVSAC---RELIVYNAYPDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNLDSEPWAKSFHGDMPSENVDDNH 275
            M + P+++S LPWIW +ETLA +   D+S LIDL++  P+ +VD+ G  A+E   LRILE     R     G S   +S  G   S +   +LR+ C   S  N ++  +EML  DV+         LPKC L++LKD ILK S+ + + LKERSGL         +   DG    +  RL +GS  D                       E+   + L   KR  +DL T N  +V+     R  + Y   P + AA K K D  CT Q I G +S   H N  +ED+SG I   +GR+G +L +            SE   D H
Sbjct:    1 MAAKPSSASTLPWIWVIETLASSAQVDASCLIDLIERTPE-IVDDLGRNAREMVSLRILESLFVERNRLTSGVSSTPNSKIGFDQSERCEDVLRRICCEISASNLKIDGTEMLNWDVEPFIMHKRACLPKCVLQQLKDEILKGSNPILASLKERSGLAIRDQYEDRILVDDGDLNAIAGRL-QGSGTDGQIVAAQGNIISSTTENQDGILQEDSPDKKLLPSKRDRSDLATEN--LVTQFHKDRICMDYGHDPHLHAAKKIKQDVTCTSQAI-GQNSVPLHGNELLEDSSGRIGQLNGREGCDLATGSQVGGLEESRFSEGDHDKH 321    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LKV1 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090} (Fragment))

HSP 1 Score: 222.246 bits (565), Expect = 9.244e-60
Identity = 164/450 (36.44%), Postives = 227/450 (50.44%), Query Frame = 0
 
Query:  254 DSEPWAKSFH-GDMPSENVDD---NHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISGR---GDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREK-------SSVSCDLS------SRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPEL-------DVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            +S P +   H  D+P +  D+   N RRE+ S  D   DE  D   ++   L +Q S SQDSLA  + T+  LCM C  G QLLVCS  +C  VVH+ CLG AP+FD   +FYCPFCAY  A+SEY + KK+ AL +N L  F   +N  R    + R    ++N     E ++  T+ N  EN V++VN  Q    + +K       S V+ DL       +RV   D T G     ++    +GS     S  E+ Q++ E        D   C+   S H  +K     E  ++VLQQP             IA    + +++P  D        ND  T   R                  ++     KQE+   YP++PQ RRKKV W+ AEEE LK+G+R+F+S ++R +PWKRILEFG+ +F+K RT IDLKDKWRN+CK SP
Sbjct:  394 NSVPLSDGTHLKDIPDDAKDEREHNPRREMSSDSDGYQDEKIDVALKKRNFLSSQCSISQDSLATADCTELNLCMKCNKGGQLLVCSGSACPLVVHQSCLGSAPSFDNSGKFYCPFCAYSHAISEYLEIKKKAALARNELAVFIGLENGHRGDKHTKRFLVPEQNQFILDENANGNTQANCNENHVNKVNSTQHRGDIXDKKQMEPSVSKVNDDLPCQEEGVTRVD--DATLGALPDGERGGGKLGSQCQSGSALEE-QQIEEGGGCDRGDDNSTCRDRESGH-ETKGHGEDEMQKEVLQQP-------------IANPNRRAARLPKVDVGESSEEENDKATSNYR------------------IKRRNRGKQEKQYTYPAIPQLRRKKVSWTSAEEEILKDGMRKFSSIHDRNIPWKRILEFGSDVFQKGRTTIDLKDKWRNICKGSP 808    

HSP 2 Score: 90.8929 bits (224), Expect = 3.020e-16
Identity = 63/160 (39.38%), Postives = 90/160 (56.25%), Query Frame = 0
 
Query:    9 SWLPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF----PGSRKGECCGDS-LKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCSDGVTKRLP 155
            S LPWIW +E LA +   D+S+L+DL+K  P+ + D+ G  A+E   LRILE F     GS+ G+   DS ++LD +      L+ +  E S  N  + E EML+ DV T        LPKCTL +LK+ IL+ +H + + L E SG L  S+    R+P
Sbjct:    6 STLPWIWVIEALASFKQVDASILLDLVKRTPE-ISDDLGENAREMVSLRILESFFARQSGSKNGDSAIDSKIELDPSKQCEDVLRDIVHETSASNLRMDEPEMLKWDVQTFIMHKRASLPKCTLLQLKNAILEGNHPILASLTESSG-LSLSNQSGNRIP 163    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LRH5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7144792.1}))

HSP 1 Score: 215.698 bits (548), Expect = 1.963e-57
Identity = 171/485 (35.26%), Postives = 245/485 (50.52%), Query Frame = 0
 
Query:  215 FCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISGR---GDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREK-------SSVSCDLS------SRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPEL-------DVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            + TQQ   G++S     N  + +TS  + L    DG++L   P       D   +  + N RRE+ S  D   DE  D   ++   L +Q S SQDSLA  + T+  LCM C  G QLLVCS  +C  VVH+ C+G AP+FD   +FYCPFCAY  A+SEY + KK+ A+ +N L  F   +N  R    + R    ++N     E  +  T+ N  EN V++VN  Q    + +K       S V+ DL       +RV   D T G     ++    +GS     S  E+ Q++ E        D   C+   S H  +K     E  ++VLQQP             IA    + +++P          + D    ++ E D +   + + R      RS G  KQ++   YP++PQ RRKKV W+ AEEE LK+G+R+F+S ++R +PWKRILEFG+ +F+K RT IDLKDKWRN+CK SP
Sbjct:  370 YETQQRNHGDESRDKCGNTQI-NTSNSVPLL---DGTHLKDIP-------DDARDEREHNPRREMSSDSDGYQDEKIDVALKKRNFLSSQCSISQDSLATADCTELNLCMKCNKGGQLLVCSGSACPLVVHQSCVGSAPSFDNSGKFYCPFCAYSHAISEYLEIKKKAAVARNELAVFIGLENGHRVDKHTKRFLVPEQNQFILDENENGNTQANCNENHVNKVNNTQHRGDIDDKKQMEPSVSKVNDDLPCQEEGVTRVD--DGTLGALPDGERGGGKLGSQCQSGSALEE-QQIEEGGGCDRGDDNSTCRDRESGHE-TKGHGEDEMRKEVLQQP-------------IANPNRRAARLP----------KVDVGESSEEENDKATSNYRIKR------RSRG--KQKKQYTYPAIPQLRRKKVSWTSAEEEILKDGMRKFSSIHDRNIPWKRILEFGSDVFQKGRTTIDLKDKWRNICKGSP 808    

HSP 2 Score: 88.1965 bits (217), Expect = 2.138e-15
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 0
 
Query:    9 SWLPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF----PGSRKGECCGDS-LKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCSDGVTKRLP 155
            S LPWIW +E LA +   D S+L+DL+K  P+ + D+ G  A+E   LRILE F     GS+ G    DS ++LD +      L+ +  E S  N  + E EML+ DV T        LPKCTL +LK+ IL+ +H + + L E SG L  S+    R+P
Sbjct:    6 STLPWIWVIEALASFKQVDVSILLDLVKRTPE-ISDDLGENAREMVSLRILESFFARQSGSKNGGSAIDSKIELDPSKQCENVLRDIVHETSASNLRMDEPEMLKWDVKTFIMHKRASLPKCTLLQLKNAILEGNHPVLASLTESSG-LSLSNQSGNRIP 163    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZJJ1 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})

HSP 1 Score: 212.231 bits (539), Expect = 3.501e-56
Identity = 148/439 (33.71%), Postives = 230/439 (52.39%), Query Frame = 0
 
Query:  249 DGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF-----KNRLRNSDISGRGDRNHVR-DSEVSDKCTEQNNLENVVSRVNQVQSMMRMREK-----SSVSCDLSSRVGERDVT-CGGNM----ADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKA 671
            +G   D   W K+F  D   +++++N   E+ S  D  +DE  D   ++   L +Q S SQDSLA  + T+  LCM C    QLLVCS+ +C  VVHE CLG A +FD    FYCPFCAY +A+S+Y + KK+ +L +  L +F     +++L+      R +RN +R D    D+  E N   N V++VN  Q    + +K     S++  + +   GE+ V    G +     D +  E +G    CQS +  V     ++VQ    +   +   +   +V   ++  +   GV       +Q ++ + + DS           SH+   +   D E+      + +         S+  +K E+   YP++PQ RRKKVPW+  EE+ LKEGVRRF+S+N+R++PWK+ILEFG  +F+K RT IDLKDKWRN+C++
Sbjct:  411 NGEPPDGSHW-KNF-ADKAKDDMENNRELEMSSDSDEYNDEKIDVSMKKHSFLSSQYSFSQDSLATSDWTELNLCMKCNKSGQLLVCSTSACPLVVHENCLGSAASFDDGGNFYCPFCAYSQAISKYLEVKKKASLARKELAAFIGLGNEHQLKKLPKRLRSERNQLRQDGGDVDRNNETNYNGNYVNKVNNPQCRTNIEDKQQAEPSALRVNDNLPCGEQGVAMINGPLRALPEDNREVEKMGQE--CQSAR--VLGGHHIEVQADHRHGGDNSSCRDAGIVHACERHAEV--GV-------QQNVSGQPIIDS-----------SHKAACQPNVDTEESSEEDNNSIASNY-----SIRFRKPEKRYTYPAIPQLRRKKVPWTQVEEDILKEGVRRFSSENDRSIPWKKILEFGGNVFQKGRTTIDLKDKWRNICRS 818    

HSP 2 Score: 102.449 bits (254), Expect = 7.623e-20
Identity = 101/302 (33.44%), Postives = 134/302 (44.37%), Query Frame = 0
 
Query:    1 MTSSPNASSWLPWIWALETLAYN-HADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGS------LKLLRKECSGRNHELSESEMLRLDVD-------TGLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCS-------------DGVTKRLPEGSNCDAA---------------------ENPKVRDLSSGKRGINDLTTAN-EGMVSACRELIVYNAYPDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNL 253
            M + P ++S L WIW +ETLA +   D+SLL+DL+K  P+ + D+ G+ A E   LRILE     R     G S   +S  G   S       + +  E S  N ++  +EML  D+          LPKC L++LKD ILK SH + + LKERSGL   +             + V  RL +GS  D                       E   VRDL   KR  +DL T N        R  I     P + A  K K D  CT Q I G +S   +E   +ED SG I   +GR G +L
Sbjct:    1 MAAKPYSASTLRWIWVIETLASSTQVDASLLMDLIKRTPE-IFDDLGSNATEMVSLRILESLFAERNRMTIGVSPAPNSKIGFDPSERCEDVFRHIWCEISASNSKIDGTEMLNWDIQPFILHKRACLPKCVLQQLKDAILKGSHPILASLKERSGLAIRNQSEARILVDDVDLNAVAGRL-QGSGTDGPIVAAQGNIISSTSENRDELLQEYSPVRDLLPSKRDRSDLATENLATQFHEDRISIDSGLDPHLHAVKKIKQDVTCTHQAI-GQNSVPLNE--PLEDPSGRIGQLNGRKGCDL 297    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7C9AI95 ((Uncharacterized protein {ECO:0000313|EMBL:MBA4667936.1}))

HSP 1 Score: 201.445 bits (511), Expect = 4.506e-53
Identity = 204/721 (28.29%), Postives = 319/721 (44.24%), Query Frame = 0
 
Query:   11 LPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGS------LKLLRKECSGRNHELSESEMLRLDV-------DTGLPKCTLRKLKDMILKDSHLLPSYLKERSGLL-----KCSDGV---TKRLPEGSNCDAAEN-PKVRDLSSGKRGIND------LTTAN--EGMVSACRELI---------VYNAYPDVKAATKRKWDTFCTQQ----VIEGND---SASFHENRHVEDTSGGIVLYSGRDGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNAL-LSFKNRLR-----NSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVT-CGGNMA--DKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASPVV 675
            LPW W +ETLA      ++LL +L+   P  +    G  A+E+  LR LE F GS  G          S AG   S      L+ +  E SG + +   S+ L+ DV          LP+CTL  LK MI++ +H  PS LKE           CS+GV   +  L    NCD  +  P   +  S K G +D      L   N    M     + +         + N  P VK     K D   +Q+      +G D   + +  +NR   D +      S  +G NL          GD+    V  +++++    ++  H +  D IAR+ +   +  S   D    +  ++  LCM C  G  LL+C + +C    H+ CLG + TFD + +FYCPFCAY RA+SEY+ +K++ +L +  L L    ++      +S  +  GD N  R +E  +K TE  N +NVV+ V   + +   + K      L +   E   T    N++  D+Q AE I      Q  ++  + + +    N    +S H   +     +K   + ++       T ++  ++ +  V    + DSD              ++ E+  +N   + P     PLR +           P+  + RRKKVPW+  EE  LKEGV++F   +++ +PWK ILEFG  +F+K R A+DLKDKWRN+ + SP V
Sbjct:   10 LPWCWVIETLAGSQQVGAALLHELLSRAPP-LAGKSGKEAREAVALRCLEEFFGSPTGSIDDHPASRTSKAGFDASDSCEDVLQRIVHESSGSDLQKDASDELKCDVRAFIELKKATLPRCTLGLLKRMIIEGTH--PS-LKELGEFTCQNQSICSNGVDPASTVLTVNENCDDGQAMPAEENRDSAKNGTSDQLEQASLPNGNSPHSMAGTSNDQVQDGDDTAHSLDNQQPPVKKPKLDKQDGLQSQRQPSIPCDGGDMSNAVADAKNRQCLDATQNCNGTS--NGENL----------GDLRKTGVCYDNQQQTSHDNNGPHSKETD-IARKMLAFLSSQSILPDDSPVMTESEVNLCMKCNKGGDLLICDASTCPLAFHDGCLGCSATFDDQGKFYCPFCAYSRAISEYAKAKEKVSLARKELSLFIGGKISCCAEPDSTTASGGDANQQRRNEHINKKTEPRNDDNVVTEVVNRRQLRSSKNKQPEVPPLPANAAENAFTPAAQNLSPRDRQGAEVIA-----QLARDTTRLLNQGQDHNTDGGSSSHASDRITETRQKSSYLKRKKE----ATRHQAAELHVD-VNSESISDSDGL------------SEDEKKWTNTSILSP----TPLREV-----------PATNRSRRKKVPWTAEEEAILKEGVQKFIQGDSKAIPWKDILEFGGSVFQKGRRAVDLKDKWRNIMRGSPKV 676    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SHX1 ((uncharacterized protein LOC113691459 isoform X3 {ECO:0000313|RefSeq:XP_027065401.1}))

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-50
Identity = 145/443 (32.73%), Postives = 213/443 (48.08%), Query Frame = 0
 
Query:  261 SFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFK------NRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPN--------GVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPH-VLPRELA-------------KPLRSLGVQ--KQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            SF G    +++  N   ++ S  D   DE  D   ++D LL +Q + SQDS A    T+ + C+ C    QLLVCSS +CQ  VH  CL  A  FD K +FYCPFCAY RA+SEY   K++ +  +  L SF        + + +   GR  RN +R +E        NN E+ V++V+                         D  CG  M +K  +E                  P L   +C + +S H G K ++  +++   L   N           L+    EQ +    V  S V    K   ++ RN+   GA+ ++ VS  P   LP+E               K +RS  ++  +  ++  YP++PQ RRK +PW+ AEEE LKEGV+R +S ++R++PWK+ILEFG  +F++ RT IDLKDKWRN+CK  P
Sbjct:  424 SFGGSGSKDDMQHNPDFDMTSDSDDYRDEKMDIALKKDALLSSQCTYSQDSFA----TQAKYCVKCNKEGQLLVCSSDTCQLAVHSSCLPSAAHFDGKGKFYCPFCAYSRAISEYMQVKRKASFARKDLASFIGVQTVCQQKKATMKLGRESRNELRKNE-------GNNSEDFVNKVS-------------------------DSHCGVKMGNKHQSE------------------PPL---SCSSDHS-HSGEKVVSPSDRMPNTLVSGNLERKYMEPQCQLLGVQVEQPVVAHPVHGSDV--DRKKAHMADRNEGNAGAEGKK-VSEIPESALPQEPVCGPISESSEEDNEKSVRSYSIRLRRPIKNYTYPAIPQLRRKILPWTKAEEEKLKEGVQRLSSPHDRSIPWKQILEFGGDVFQRGRTTIDLKDKWRNICKGGP 805    

HSP 2 Score: 41.9726 bits (97), Expect = 4.032e-1
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0
 
Query:  104 EMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGL---LKCSDGV 150
            EML  DV +        LPK  L+KLKD IL+ SH + S LKERSGL    +C+D +
Sbjct:   12 EMLNGDVQSFIVHKRASLPKPALQKLKDAILEGSHSILSSLKERSGLTVTTQCNDDI 68    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SGY8 ((uncharacterized protein LOC113691459 isoform X2 {ECO:0000313|RefSeq:XP_027065399.1, ECO:0000313|RefSeq:XP_027065400.1}))

HSP 1 Score: 196.052 bits (497), Expect = 3.108e-50
Identity = 145/443 (32.73%), Postives = 213/443 (48.08%), Query Frame = 0
 
Query:  261 SFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFK------NRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPN--------GVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPH-VLPRELA-------------KPLRSLGVQ--KQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            SF G    +++  N   ++ S  D   DE  D   ++D LL +Q + SQDS A    T+ + C+ C    QLLVCSS +CQ  VH  CL  A  FD K +FYCPFCAY RA+SEY   K++ +  +  L SF        + + +   GR  RN +R +E        NN E+ V++V+                         D  CG  M +K  +E                  P L   +C + +S H G K ++  +++   L   N           L+    EQ +    V  S V    K   ++ RN+   GA+ ++ VS  P   LP+E               K +RS  ++  +  ++  YP++PQ RRK +PW+ AEEE LKEGV+R +S ++R++PWK+ILEFG  +F++ RT IDLKDKWRN+CK  P
Sbjct:  522 SFGGSGSKDDMQHNPDFDMTSDSDDYRDEKMDIALKKDALLSSQCTYSQDSFA----TQAKYCVKCNKEGQLLVCSSDTCQLAVHSSCLPSAAHFDGKGKFYCPFCAYSRAISEYMQVKRKASFARKDLASFIGVQTVCQQKKATMKLGRESRNELRKNE-------GNNSEDFVNKVS-------------------------DSHCGVKMGNKHQSE------------------PPL---SCSSDHS-HSGEKVVSPSDRMPNTLVSGNLERKYMEPQCQLLGVQVEQPVVAHPVHGSDV--DRKKAHMADRNEGNAGAEGKK-VSEIPESALPQEPVCGPISESSEEDNEKSVRSYSIRLRRPIKNYTYPAIPQLRRKILPWTKAEEEKLKEGVQRLSSPHDRSIPWKQILEFGGDVFQRGRTTIDLKDKWRNICKGGP 903    

HSP 2 Score: 70.8626 bits (172), Expect = 5.701e-10
Identity = 58/167 (34.73%), Postives = 80/167 (47.90%), Query Frame = 0
 
Query:    1 MTSSPNASSWLPWIWALETLAYN-HADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF------PGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGL---LKCSDGV 150
            M S     S + W W +E L+ +  AD+SLLID++K  P+   D  G   +E   LRILE           +     G  L+LD +      L+ +  E S  +      EML  DV +        LPK  L+KLKD IL+ SH + S LKERSGL    +C+D +
Sbjct:    1 MASEIPVPSTMAWSWVIEALSRSKQADTSLLIDIIKKAPEVSDDELGKNCREVVSLRILESLIVKGNQNKDKDAATVGQKLELDPSNNCEDVLRQI-SEMSAMDLTAVAPEMLNGDVQSFIVHKRASLPKPALQKLKDAILEGSHSILSSLKERSGLTVTTQCNDDI 166    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SIN0 ((uncharacterized protein LOC113691459 isoform X1 {ECO:0000313|RefSeq:XP_027065397.1}))

HSP 1 Score: 195.667 bits (496), Expect = 3.457e-50
Identity = 145/443 (32.73%), Postives = 213/443 (48.08%), Query Frame = 0
 
Query:  261 SFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFK------NRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPN--------GVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPH-VLPRELA-------------KPLRSLGVQ--KQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            SF G    +++  N   ++ S  D   DE  D   ++D LL +Q + SQDS A    T+ + C+ C    QLLVCSS +CQ  VH  CL  A  FD K +FYCPFCAY RA+SEY   K++ +  +  L SF        + + +   GR  RN +R +E        NN E+ V++V+                         D  CG  M +K  +E                  P L   +C + +S H G K ++  +++   L   N           L+    EQ +    V  S V    K   ++ RN+   GA+ ++ VS  P   LP+E               K +RS  ++  +  ++  YP++PQ RRK +PW+ AEEE LKEGV+R +S ++R++PWK+ILEFG  +F++ RT IDLKDKWRN+CK  P
Sbjct:  531 SFGGSGSKDDMQHNPDFDMTSDSDDYRDEKMDIALKKDALLSSQCTYSQDSFA----TQAKYCVKCNKEGQLLVCSSDTCQLAVHSSCLPSAAHFDGKGKFYCPFCAYSRAISEYMQVKRKASFARKDLASFIGVQTVCQQKKATMKLGRESRNELRKNE-------GNNSEDFVNKVS-------------------------DSHCGVKMGNKHQSE------------------PPL---SCSSDHS-HSGEKVVSPSDRMPNTLVSGNLERKYMEPQCQLLGVQVEQPVVAHPVHGSDV--DRKKAHMADRNEGNAGAEGKK-VSEIPESALPQEPVCGPISESSEEDNEKSVRSYSIRLRRPIKNYTYPAIPQLRRKILPWTKAEEEKLKEGVQRLSSPHDRSIPWKQILEFGGDVFQRGRTTIDLKDKWRNICKGGP 912    

HSP 2 Score: 62.7734 bits (151), Expect = 1.618e-7
Identity = 58/176 (32.95%), Postives = 80/176 (45.45%), Query Frame = 0
 
Query:    1 MTSSPNASSWLPWIWALETLAYN-HADSSLLI---------DLMKLIPDNVVDNGGNVAKESAFLRILEGF------PGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGL---LKCSDGV 150
            M S     S + W W +E L+ +  AD+SLLI         D++K  P+   D  G   +E   LRILE           +     G  L+LD +      L+ +  E S  +      EML  DV +        LPK  L+KLKD IL+ SH + S LKERSGL    +C+D +
Sbjct:    1 MASEIPVPSTMAWSWVIEALSRSKQADTSLLIELCWHLCDSDIIKKAPEVSDDELGKNCREVVSLRILESLIVKGNQNKDKDAATVGQKLELDPSNNCEDVLRQI-SEMSAMDLTAVAPEMLNGDVQSFIVHKRASLPKPALQKLKDAILEGSHSILSSLKERSGLTVTTQCNDDI 175    
BLAST of DCAR_009054 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TUF4 ((uncharacterized protein LOC105168847 isoform X1 {ECO:0000313|RefSeq:XP_011087312.1}))

HSP 1 Score: 195.667 bits (496), Expect = 4.453e-50
Identity = 140/419 (33.41%), Postives = 212/419 (50.60%), Query Frame = 0
 
Query:  269 ENVDDNHRREILSSD-DIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF------KNRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLE--NVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQN--AETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLH---GGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673
            +NVD+      +SSD D  +DE  +   ++   L +Q + SQDSLA  +  +  LCM C  G +LLVCSS SC  V+HE C G   TFD K +FYCPFCAY +A+S+Y + KK+ +L +    +F      K +   S  S R  ++H+   E  D   E N L   +VV +V+  Q   R+  + +   +            GG   D  N  A T+        T  Q  + P++  +N +A  ++    G S       + +   +Q +       N   K  ++   ++ +P  +K    SH  D     + E + S+      R          V+KQE+   YP++PQ RRK++PW+ AEEE LK+G+R + S  ++ +PWK+ILEFGA +FE+ RT +DLKDKWRNMCK +P
Sbjct:  545 QNVDEAVEDVNISSDSDGYYDERSNIDTKKRRFLSSQCTYSQDSLATTDWRELNLCMKCNKGGKLLVCSSNSCPLVIHESCFGSDATFDTKGKFYCPFCAYSQAISKYMEVKKKVSLARKDFATFICLGSPKEKKEPSQRSCRLKQDHL---EQDDDFPESNELNKGDVVEKVSNCQHRKRLEFEQAGPSEHPGNSPH----FGGKAVDSTNRLARTLSKDKQGGETTRQESQSPKVHGRNQRAARAIRKSRGESTSFQASRRPEVNEKQKHA------NTRSKKEVQCPPETDLPYENKSSPSSHSTDSEEIPEEENEDSSVSKYFIR----------VRKQEKQCSYPAIPQLRRKRLPWTSAEEETLKKGMRLYCSPYDKIIPWKKILEFGANVFEQSRTTMDLKDKWRNMCKGTP 940    

HSP 2 Score: 69.3218 bits (168), Expect = 1.772e-9
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 0
 
Query:    8 SSWLPWIWALETLAY-NHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF-----PGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVD-------TGLPKCTLRKLKDMILKDSHLLPSYLKERSGL 143
            +S LP IW +ETLA+ N  D+SLL+DL++  P+ + D  GN A+ES  LRILE F     P +         ++L+ +      L+L+  E    + + +  E+++ D+        + L K  L++LKD IL  S+   + LK +SGL
Sbjct:   22 TSPLPRIWVIETLAHSNRVDTSLLLDLLEKTPE-ISDEFGNNARESVSLRILESFIVQGGPANPVSSASSKKIRLNPSDRCEDVLRLILTEMPPPHPKRAGPEIMKWDLQPFIEHKRSTLAKSALQQLKDAILTGSYCFLASLKGQSGL 169    
Match NameStatsDescription
A0A7J7H3N9E-Value: 1.193e-72, PID: 30.35Myb-like domain-containing protein {ECO:0000259|PR... [more]
A0A5B7AGL5E-Value: 1.503e-60, PID: 35.20Myb-like domain-containing protein {ECO:0000259|PR... [more]
A0A6A4LKV1E-Value: 9.244e-60, PID: 36.44Myb-like domain-containing protein {ECO:0000259|PR... [more]
A0A834LRH5E-Value: 1.963e-57, PID: 35.26(Uncharacterized protein {ECO:0000313|EMBL:KAF7144... [more]
A0A5J4ZJJ1E-Value: 3.501e-56, PID: 33.71Myb-like domain-containing protein {ECO:0000259|PR... [more]
A0A7C9AI95E-Value: 4.506e-53, PID: 28.29(Uncharacterized protein {ECO:0000313|EMBL:MBA4667... [more]
A0A6P6SHX1E-Value: 2.074e-50, PID: 32.73(uncharacterized protein LOC113691459 isoform X3 {... [more]
A0A6P6SGY8E-Value: 3.108e-50, PID: 32.73(uncharacterized protein LOC113691459 isoform X2 {... [more]
A0A6P6SIN0E-Value: 3.457e-50, PID: 32.73(uncharacterized protein LOC113691459 isoform X1 {... [more]
A0A6I9TUF4E-Value: 4.453e-50, PID: 33.41(uncharacterized protein LOC105168847 isoform X1 {... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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