Resource Type:
Polypeptide
Name:
DCAR_008874
Identifier:
DCAR_008874.mRNA-protein
Sequence:
MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSNSG
NLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRS
ASFNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRV
VREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQ
STITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVR
CLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELE
QMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMA
LSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGT
MQNPQTSGFSSSHFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRL
LQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNR
VATTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELA
QDIAQEFSEHGLFSDLEESMAYGGWKTGL*
Sequence Length:
580
Sequence Checksum:
b825ced0688ab7e2ca6751167eedb03d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_008874, derives from mRNA, DCAR_008874. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AG60 ((Putative transcriptional regulator SLK2 {ECO:0000313|EMBL:MPA55699.1}) (1.1.3.15 {ECO:0000313|EMBL:MPA55699.1}))
HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 324/494 (65.59%), Postives = 380/494 (76.92%), Query Frame = 0
Match: A0A5B7AG60 ((Putative transcriptional regulator SLK2 {ECO:0000313|EMBL:MPA55699.1}) (1.1.3.15 {ECO:0000313|EMBL:MPA55699.1}))
HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 324/494 (65.59%), Postives = 380/494 (76.92%), Query Frame = 0
Query: 84 VTDANSGLSVGPNLQRSASFNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSSHFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWK 576
+ A SG + N + GVIDELL+LD+PRECR SSG+MMLEYGKAVQESVYEQLRVVREGQLR+IFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQ I ESGSDGVSQQD Q SNM++TA RQ K+LE QSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCR+ K GP+E LK +PR AS AK Q+QKMQE+EQ+A I GL TDR TLNKL+A + GLN+Q+ ++ MVGR ALSGS QAA+AL++YQN+LMRQNS NSNSNS QQEA+SS +N NQ +S +FQGS ++L GT+QN SGFS+S L QR+LN G LQQNH Q Q SQ LQQ +IQ+LLQD+N+ GGV QQQ L G +AN S DGLG+G+ +S +AA N + P P+RSNSFK S SDSSA GNNG +++A D+ QNL LS+E+ QDIA +F+E+G F SDLE+SM Y GWK
Sbjct: 41 ICGAKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDMPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQRAIAESGSDGVSQQDLQTNSNMIMTAQRQLDKTLELQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCREHKVGPIEGLKNYPRHASAAKLQMQKMQEMEQLAGIQGLPTDRNTLNKLMALHPGLNSQMVNDHHMVGRGALSGSAQAALALTSYQNLLMRQNSMNSNSNSFQQEASSSFNNSNQNSSSAFQGSTALLPGTLQNLAASGFSNSR-LSQQQRSLNGIGLLQQNHAQPSQGSQALQQHVIQQLLQDMNTTTG-GGV--QQQSLGGQNANGSVARDGLGFGNTSSAATAASGNGQGSVMGPTPSRSNSFKAASHSDSSAGGGNNGFNRKAPDLSQNLHLSEEMVQDIAHDFTENGFFNSDLEDSMGY-GWK 529
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ATT5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533768.1}))
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 314/470 (66.81%), Postives = 372/470 (79.15%), Query Frame = 0
Match: A0A5J5ATT5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533768.1}))
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 314/470 (66.81%), Postives = 372/470 (79.15%), Query Frame = 0
Query: 111 GVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSS---HFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWK 576
GVIDELL+LD+PRECR SG+MMLEYGKAVQESVYEQLRVVREGQLR+IFTPDLKILSWEFCAR HEELLPRRLVAPQVNQ LQVAQKCQSTI ESGSDGVSQQD Q SNM+VTA RQ A++LE QSLNDLGFSKRYVRCLQISEVVNSMKDLMDFC +QK GP+E LK +P+ A+ AK Q+QKMQE+EQ+A I GL TDR TL+KL+ GLN+Q+ N+ +VGR LSGS QAA+A++NYQ++LMRQNS NSNSN QEA+SS +N NQ S +FQG A +L G +QN +SGFS+S Q QR+LNVNG LQQNH Q Q SQ LQQ MIQ+LLQD+ NN+ GGV QQQ LAG + N S D +G+GSNTS +AA +N P P+RSNSFK VS SDSSAA GN+G +Q+A D+PQ+L L +++ QDIA++F+E+G F SDL+++M Y GWK
Sbjct: 35 GVIDELLFLDMPRECRSPSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCARRHEELLPRRLVAPQVNQFLQVAQKCQSTIAESGSDGVSQQDLQTNSNMVVTAWRQLARTLELQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCGEQKVGPIEGLKNYPQHATAAKLQMQKMQEMEQLAGIQGLPTDRNTLSKLMTVYPGLNSQMGNNHHIVGRGTLSGSAQAALAMTNYQSLLMRQNSMNSNSNPLHQEASSSFNNSNQNPSSTFQGPAGLLQGMLQNLPSSGFSNSQFPQQQQLQQRSLNVNGLLQQNHPQPSQGSQTLQQHMIQQLLQDM-KNNSGGGV--QQQSLAGQNVNGSVRRDTIGFGSNTSTATAAPINGPGNIMGPTPSRSNSFKAVSNSDSSAAGGNSGFNQKAPDLPQDLHLPEDMVQDIARDFTENGFFNSDLDDNMGY-GWK 500
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AJM8 ((Putative transcriptional regulator SLK2 {ECO:0000313|EMBL:MPA55701.1}) (1.1.3.15 {ECO:0000313|EMBL:MPA55701.1}))
HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 321/479 (67.01%), Postives = 375/479 (78.29%), Query Frame = 0
HSP 2 Score: 135.961 bits (341), Expect = 7.762e-31
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 0
Match: A0A5B7AJM8 ((Putative transcriptional regulator SLK2 {ECO:0000313|EMBL:MPA55701.1}) (1.1.3.15 {ECO:0000313|EMBL:MPA55701.1}))
HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 321/479 (67.01%), Postives = 375/479 (78.29%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSSHF----LQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWK 576
N + GVIDELL+LD+PRECR SSG+MMLEYGKAVQESVYEQLRVVREGQLR+IFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQ I ESGSDGVSQQD Q SNM++TA RQ K+LE QSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCR+ K GP+E LK +PR AS AK Q+QKMQE+EQ+A I GL TDR TLNKL+A + GLN+Q+ ++ MVGR ALSGS QAA+AL++YQN+LMRQNS NSNSNS QQEA+SS +N NQ +S +FQGS ++L GT+QN SGFS+S Q QR+LN G LQQNH Q Q SQ LQQ +IQ+LLQD+N+ GGV QQQ L G +AN S DGLG+G+ +S +AA N + P P+RSNSFK S SDSSA GNNG +++A D+ QNL LS+E+ QDIA +F+E+G F SDLE+SM Y GWK
Sbjct: 383 LNEIKFGSGVIDELLFLDMPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQRAIAESGSDGVSQQDLQTNSNMIMTAQRQLDKTLELQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCREHKVGPIEGLKNYPRHASAAKLQMQKMQEMEQLAGIQGLPTDRNTLNKLMALHPGLNSQMVNDHHMVGRGALSGSAQAALALTSYQNLLMRQNSMNSNSNSFQQEASSSFNNSNQNSSSAFQGSTALLPGTLQNLAASGFSNSRLSQQQQQQQQRSLNGIGLLQQNHAQPSQGSQALQQHVIQQLLQDMNTTTG-GGV--QQQSLGGQNANGSVARDGLGFGNTSSAATAASGNGQGSVMGPTPSRSNSFKAASHSDSSAGGGNNGFNRKAPDLSQNLHLSEEMVQDIAHDFTENGFFNSDLEDSMGY-GWK 857
HSP 2 Score: 135.961 bits (341), Expect = 7.762e-31
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
M PSRVAGGL +SS++SGI FQGD QS VGNSHLSS + +++ G RSN+GP SGDVSNT+LNSVA+SGPSVGASSLVTDANSGLS GP+LQRSAS NT+SY+R
Sbjct: 1 MMPSRVAGGLT---HSSSSSGICFQGDGQSQAVGNSHLSSSFGNSSNSIPGTARSNLGPISGDVSNTILNSVASSGPSVGASSLVTDANSGLSGGPHLQRSASINTESYLR 108
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AG29 ((Putative SEUSS-like 2 {ECO:0000313|EMBL:MPA55700.1}) (1.1.3.15 {ECO:0000313|EMBL:MPA55700.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 320/497 (64.39%), Postives = 377/497 (75.86%), Query Frame = 0
HSP 2 Score: 134.42 bits (337), Expect = 2.579e-30
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 0
Match: A0A5B7AG29 ((Putative SEUSS-like 2 {ECO:0000313|EMBL:MPA55700.1}) (1.1.3.15 {ECO:0000313|EMBL:MPA55700.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 320/497 (64.39%), Postives = 377/497 (75.86%), Query Frame = 0
Query: 84 VTDANSGLSVGPNLQRSASFNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSS---HFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWK 576
+ A SG + N + GVIDELL+LD+PRECR SSG+MMLEYGKAVQESVYEQLRVVREGQLR+IFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQ I ESGSDGVSQQD Q SNM+V A RQ +++LE QSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCR+ K GP+E LK +P+ A+ AK Q+Q+M++L GL TDR TLNKL+AQ+ G+N+Q+ ++QMVGR ALSGS QAA+ALS+YQN+LMRQNS NSNSNS QEA+ S +N NQ S +FQG ++L GT+QN +SGFS+S Q QR+LN NG LQQNH Q Q SQ LQQ MIQ+LLQD+ NN GGV QQQ AG +AN S G DG+G+GSN S +AA VN + P P+RSNSFK S DSSAA GNNG +Q+A D+ QNLQLSDE+ QDIA + +E+G F SDLE++M+Y WK
Sbjct: 364 ICGAKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDMPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQRAIAESGSDGVSQQDLQTNSNMVVAAWRQLSRTLELQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCREHKAGPIEGLKNYPQHATAAKLQMQEMEQL-------GLPTDRNTLNKLMAQHPGMNSQMGNSHQMVGRGALSGSAQAALALSSYQNLLMRQNSMNSNSNSLHQEASPSFNNSNQNPSSTFQGPTALLPGTLQNLPSSGFSNSQLPQQQQMQQRSLNGNGLLQQNHPQPSQGSQALQQHMIQQLLQDMK-NNTGGGV--QQQSHAGQNANGSVGRDGMGFGSNPSAATAASVNGPGSIMGPTPSRSNSFKAASNIDSSAAGGNNGFNQKAPDLSQNLQLSDEMVQDIAHDLTENGFFNSDLEDNMSY-CWK 849
HSP 2 Score: 134.42 bits (337), Expect = 2.579e-30
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
M PSRVAGGL +SS++SG+ FQGD QS VGNSHLSS + +++ G RSN+GP SGDVSNT+LNSVA+SGPSVGASSLVTDANSGLS GP+LQRSAS NT+SY+R
Sbjct: 1 MMPSRVAGGLT---HSSSSSGLCFQGDGQSQAVGNSHLSSSFGNSSNSIPGTARSNLGPISGDVSNTILNSVASSGPSVGASSLVTDANSGLSGGPHLQRSASINTESYLR 108
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BBV1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539880.1}))
HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0
Identity = 317/475 (66.74%), Postives = 369/475 (77.68%), Query Frame = 0
HSP 2 Score: 127.487 bits (319), Expect = 4.673e-28
Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 0
Match: A0A5J5BBV1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539880.1}))
HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0
Identity = 317/475 (66.74%), Postives = 369/475 (77.68%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSSHFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWK 576
N + GVIDELL+LDLPRECR SG+MMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCAR HEELLPRRLVAPQVNQLLQVAQKCQ I ESGSDGVSQQD Q SNM+V A RQ ++LE QSLNDLGFSKRYVRCLQISEVVNSMKD+MDFCR+ K GP+E LK +PR + AK Q+QKMQE+EQ+A I GL TDR TLN+L+ + GLN+Q+ ++ M GR ALSG QAA+AL++YQNMLMRQNS NSNSNS QQEA+SS +N NQ +SP+FQGS + L GT+QN SGFS+S Q Q +LN G QQNH Q Q SQ LQQ MIQ+LLQD+ NN TGG PQQ L+G +AN S DGLGYG+N S +AA N + P P+R+NSFK S SDSSAA GNNG +Q+ D+PQNL LS+E+ QDIA +F+E+G F SDLE++M+Y GWK
Sbjct: 381 LNEIKFGSGVIDELLFLDLPRECRFPSGIMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARRHEELLPRRLVAPQVNQLLQVAQKCQRAIAESGSDGVSQQDLQTNSNMIVAAQRQLDRTLELQSLNDLGFSKRYVRCLQISEVVNSMKDVMDFCREHKIGPIEGLKNYPRHGTAAKLQMQKMQEMEQLAGIQGLPTDRNTLNQLMTLHPGLNSQMGNDHHMAGRGALSGPAQAALALNSYQNMLMRQNSMNSNSNSLQQEASSSFNNPNQNSSPTFQGSTAQLPGTLQNLAASGFSNSRLPQQQQHSLNGIGLQQQNHAQPSQGSQALQQHMIQQLLQDM--NNKTGGGVPQQS-LSGQNANGSVARDGLGYGNNNSAATAASGNGQGSVMGPTPSRNNSFKAASHSDSSAAGGNNGFNQKESDVPQNLHLSEEMVQDIAHDFTENGFFNSDLEDNMSY-GWK 851
HSP 2 Score: 127.487 bits (319), Expect = 4.673e-28
Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
M PSR AGGL +SS++SG+FFQGD QS +GNS LSS + +++ G RSN+GP SGDVSN++LNSV +SGPSVGASSLVTDANSGLS GP+LQRSAS NT+SYMR
Sbjct: 1 MVPSRGAGGLT---HSSSSSGLFFQGDVQSQALGNSRLSSSFGNSSNSIPGTGRSNLGPVSGDVSNSVLNSVVSSGPSVGASSLVTDANSGLSGGPHLQRSASINTESYMR 108
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K1YD61 ((Uncharacterized protein {ECO:0000313|EMBL:PNT10970.1}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 311/481 (64.66%), Postives = 370/481 (76.92%), Query Frame = 0
Match: A0A2K1YD61 ((Uncharacterized protein {ECO:0000313|EMBL:PNT10970.1}))
HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 311/481 (64.66%), Postives = 370/481 (76.92%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSS-----SHFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATT-NNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWK 576
N + GVIDELL+LDLPRE RL SG+MMLEY KAVQESVYEQLRVVREGQLR+IFTPDLKILSWEFCAR HEELLPRR+VAPQVNQLLQVAQKCQSTI ESGSDGVSQQD Q SNM++TA RQ AKSLE QSLNDLGFSKRYVRCLQISEVVNSMKDL+DFCR+QK GP+E LK +PR A+ AK Q+QKMQE+EQ+AS+ GL TDR T+NKL+A + G+NN +N NNQMVGR ALSGS QAA+AL+NYQN+LMRQNS NSNS S QQEA S SN NQ S +FQG+A+ + G+MQN SGFSS Q QR+L+ N LQQ+ +S +Q LQ QMI +LLQ++ SNN+ GGV QQ ++ S N GLG+GSN SM +A + V+ + P P++SNSFK + SDSSAA GN+G +Q+ D+PQNL L D++ DIA EF+E+G F SDL+++M Y GWK
Sbjct: 263 LNEIKFGSGVIDELLFLDLPREFRLHSGIMMLEYAKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCARRHEELLPRRVVAPQVNQLLQVAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKAGPIEGLKSYPRHATAAKLQMQKMQEMEQLASVQGLPTDRNTINKLMALHPGINNHVNSNNQMVGRGALSGSAQAALALTNYQNLLMRQNSMNSNSCSLQQEAASPFSNSNQSPSSNFQGAANFIQGSMQNLPVSGFSSPHPPPQQPQQLQQRSLSSNSLLQQSLPRSSHGNQTLQPQMIHQLLQEM-SNNSGGGV--QQHSISRQSGNGGVARMGLGFGSN-SMATAPTASTVSVSAGGPAPSQSNSFKAPANSDSSAAGGNSGFNQKVPDLPQNLHLQDDIVSDIAHEFTENGFFNSDLDDNMGY-GWK 738
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5KPY6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB5532423.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 312/491 (63.54%), Postives = 368/491 (74.95%), Query Frame = 0
HSP 2 Score: 122.479 bits (306), Expect = 2.040e-26
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 0
Match: A0A5N5KPY6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB5532423.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 312/491 (63.54%), Postives = 368/491 (74.95%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASING----------LQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSSH----FLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVA-TTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWKT 577
N + GVIDELL+LDLPRE RL SG+MMLEY KAVQESVYEQLRVVREGQLR+IFT DLKILSWEFCAR HEELLPRR+VAPQVNQLLQVAQKCQSTI+ESGSDGVSQQD Q SNM++TA RQ AKSLE QSLNDLGFSKRYVRCLQISEVVNSMKDL+DFCR+QK GP+E LK +PR A+ AK QLQKMQE+EQ AS+ G L TDR TLNKL+A + G NN +N NNQM GR ALSGS QAA+AL+NYQN+LMRQNS NSNS S QQEA S SN NQ S +FQG+A+ + G+MQN SGFSS H Q QR+L+ N LQQN +S +Q LQ QMIQ+LLQ+++SN+ G QQ ++G S N +GLG+GSN + +A + V+ +T P P RSNSFK + SDSSAAVGN+G +Q+ D+PQNL L D + D+A EF+E+G F SDL+++M Y GWK
Sbjct: 380 LNEIKFGSGVIDELLFLDLPREFRLPSGIMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRVVAPQVNQLLQVAQKCQSTISESGSDGVSQQDLQANSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKAGPIEGLKSYPRHATAAKLQLQKMQEMEQFASVQGLPTDRNGVQSLPTDRNTLNKLMALHPGANNHVNSNNQMAGRGALSGSAQAALALTNYQNLLMRQNSMNSNSCSLQQEAASPFSNSNQSPSSNFQGAANFIPGSMQNLSASGFSSPHLPQQPQQLQQRSLSSNSLLQQNLSRSSHGNQTLQPQMIQQLLQEMSSNSGAG---VQQHSISGQSGNDGVARNGLGFGSNC-LATAPTASAVSVSTGGPAPNRSNSFKAPANSDSSAAVGNSGFNQKVPDLPQNLHLQDVIVSDMAHEFTENGFFNSDLDDNMGY-GWKA 865
HSP 2 Score: 122.479 bits (306), Expect = 2.040e-26
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
MAPSRVAG LA SS++SGIFFQGD QS + NSHLSS + +++ G R N+GP SGD++N + NSVA SGPSVGASSLVTDANS LS GP+LQRSAS NT+SYMR
Sbjct: 1 MAPSRVAGALA---QSSSSSGIFFQGDGQSQGLVNSHLSSSFGNSSNSIPGTGRPNLGPVSGDMNNAVFNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMR 108
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V6A988 ((Uncharacterized protein {ECO:0000313|EMBL:TKS04486.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 310/482 (64.32%), Postives = 369/482 (76.56%), Query Frame = 0
HSP 2 Score: 119.013 bits (297), Expect = 2.680e-25
Identity = 72/111 (64.86%), Postives = 85/111 (76.58%), Query Frame = 0
Match: A0A4V6A988 ((Uncharacterized protein {ECO:0000313|EMBL:TKS04486.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 310/482 (64.32%), Postives = 369/482 (76.56%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASINGLQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSS-----SHFLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVATT-NNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWKT 577
N + GVIDELL+LDLPRE RL SG+MMLEY KAVQESVYEQLRVVREGQLR+IFTP+LKILSWEFCAR HEELLPRR+VAPQVNQLLQVAQKCQSTI ESGSDGVSQQD Q SNM++TA RQ AKSLE QSLNDLGFSKRYVRCLQISEVVNSMKDL+DFCR+QK GP+E LK +PR A+ AK Q+QKMQE+EQ+AS GL TDR TLNKL+A + G+NN +N NNQMVGR ALSGS QAA+AL+NYQN+LMRQNS NSNS S QQEA S SN NQ S +FQG A+ + G+MQN SGFSS Q QR+L+ N LQQ+ +S +Q LQ QMI +LLQ++ SNN+ GGV QQ ++ S N +GLG+GSN S+ +A + V+ + P P++SNSFK + SDSSAA GN+G +Q+ D+PQNL L D++ DIA EF+E+G F SDL+++M Y GWK
Sbjct: 381 LNEIKFGSGVIDELLFLDLPREFRLPSGLMMLEYAKAVQESVYEQLRVVREGQLRIIFTPELKILSWEFCARRHEELLPRRVVAPQVNQLLQVAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKAGPIEGLKSYPRHATAAKLQMQKMQEMEQLASAQGLPTDRNTLNKLMALHPGINNHVNSNNQMVGRGALSGSAQAALALTNYQNLLMRQNSMNSNSCSLQQEAASPFSNSNQSPSSNFQGGANFIPGSMQNLPVSGFSSPHPPPQQPQQLQQRSLSSNSLLQQSLPRSSHGNQTLQPQMIHQLLQEM-SNNSGGGV--QQHSISRQSGNGGLARNGLGFGSN-SLATAPTASTVSVSAGGPAPSQSNSFKAPANSDSSAAGGNSGFNQKVPDLPQNLHLQDDIVSDIAHEFTENGFFNSDLDDNMGY-GWKA 857
HSP 2 Score: 119.013 bits (297), Expect = 2.680e-25
Identity = 72/111 (64.86%), Postives = 85/111 (76.58%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
M PSRVAG LA SS++SGIFFQGD QS + NS LSS + +++ G R N+GP SGD++N +LNSVA SGPSVGASSLVTDANS LS GP+LQRSAS NT+SYMR
Sbjct: 1 MVPSRVAGALA---QSSSSSGIFFQGDGQSQGLVNSRLSSSFGNSSNSIPGTGRPNLGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMR 108
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A837AV31 ((Transcriptional regulator SLK {ECO:0000313|EMBL:KAG5234534.1}))
HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 314/491 (63.95%), Postives = 372/491 (75.76%), Query Frame = 0
HSP 2 Score: 122.479 bits (306), Expect = 1.758e-26
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 0
Match: A0A837AV31 ((Transcriptional regulator SLK {ECO:0000313|EMBL:KAG5234534.1}))
HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 314/491 (63.95%), Postives = 372/491 (75.76%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASING----------LQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSSH----FLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVA-TTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWKT 577
N + GVIDELL+LDLPRE RL SG+MMLEY KAVQESVYEQLRVVREGQLR+IFT DLKILSWEFCAR HEELLPRR+VAPQVNQLLQVAQKCQSTI+ESGSDGVSQQD Q SNM++TA RQ AKSLE QSLNDLGFSKRYVRCLQISEVVNSMKDL+DFCR+QK GP+E LK +PR A+ AK QLQKMQE+EQ AS+ G L TDR TLNKL+A + G NN +N NNQM GR ALSGS QAA+AL+NYQN+LMRQNS NSNS S QQEA S SN NQ S +FQG+A+ + G+MQN SGFSS H Q QR+L+ N LQQN +S +Q LQ QMIQ+LLQ+++SN+ GGV QQ ++G S N +GLG+GSN + +A+ + V+ +T P P+RSNSFK + SDSSAAVGN+G +Q+ D+ QNL L D +A D+A EF+E+G F SDL+++M Y GWK
Sbjct: 383 LNEIKFGSGVIDELLFLDLPRELRLPSGIMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRVVAPQVNQLLQVAQKCQSTISESGSDGVSQQDLQANSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKAGPIEGLKSYPRHATAAKLQLQKMQEMEQFASVQGLPTDRNGVQSLPTDRNTLNKLMALHPGANNHVNSNNQMAGRGALSGSAQAALALTNYQNLLMRQNSMNSNSCSLQQEAASPFSNSNQSPSSNFQGAANFIPGSMQNLSASGFSSPHLPQQPQQLQQRSLSSNSLLQQNLSRSSHGNQTLQPQMIQQLLQEMSSNSG-GGV--QQHSISGQSGNDGVARNGLGFGSNR-LATASTASAVSVSTGGPAPSRSNSFKAPANSDSSAAVGNSGFNQKLQDMSQNLHLQDVIASDMAHEFTENGFFNSDLDDNMGY-GWKA 868
HSP 2 Score: 122.479 bits (306), Expect = 1.758e-26
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
MAPSRVAG LA SS++SGIFFQGD QS + NSHLSS + +++ G R N+GP SGD++N + NSVA SGPSVGASSLVTDANS LS GP+LQRSAS NT+SYMR
Sbjct: 1 MAPSRVAGALA---QSSSSSGIFFQGDGQSQGLVNSHLSSSFGNSSNSIPGTGRPNLGPVSGDMNNAVFNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMR 108
BLAST of DCAR_008874 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835JP41 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9671979.1}))
HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 314/491 (63.95%), Postives = 368/491 (74.95%), Query Frame = 0
HSP 2 Score: 123.635 bits (309), Expect = 8.066e-27
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 0
Match: A0A835JP41 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9671979.1}))
HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 314/491 (63.95%), Postives = 368/491 (74.95%), Query Frame = 0
Query: 103 FNTDSYMRGVIDELLYLDLPRECRLSSGVMMLEYGKAVQESVYEQLRVVREGQLRVIFTPDLKILSWEFCARHHEELLPRRLVAPQVNQLLQVAQKCQSTITESGSDGVSQQDSQNTSNMMVTAARQFAKSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLMDFCRDQKDGPMESLKKFPRLASPAKFQLQKMQELEQMASING----------LQTDRGTLNKLVAQNGGLNNQINCNNQMVGRAALSGSPQAAMALSNYQNMLMRQNSFNSNSNSAQQEATSSVSNVNQKASPSFQGSASVLSGTMQNPQTSGFSSSH----FLQSHQRALNVNGGLQQNHLQSPQNSQGLQQQMIQRLLQDINSNNNTGGVQPQQQPLAGNSANVSAGSDGLGYGSNTSMGSAAQVNRVA-TTNNPMPTRSNSFKGVSASDSSAAVGNNGNSQRACDIPQNLQLSDELAQDIAQEFSEHGLF-SDLEESMAYGGWKT 577
N + GVIDELL+LDLPRE RL SG+MMLEY KAVQESVYEQLRVVREGQLR+IFT DLKILSWEFCAR HEELLPRR+VAPQVNQLL VAQKCQSTI+ESGSDGVSQQD Q SNM++TA RQ AKSLE QSLNDLGFSKRYVRCLQISEVVNSMKDL+DFCR+QK GP+E LK +PR A+ AK QLQKMQE+EQ AS+ G L TDR TLNKL+A + G NN +N NNQM GR ALSGS QAA+AL+NYQN+LMRQNS NSNS S QQEA S SN NQ S +FQG+A+ + G+MQN SGFSS H Q QR+L+ N LQQN +S +Q LQ QMIQ+LLQ+++SN+ GGV QQ ++G S N +GLG+GSN + +A + V+ +T P P+RSNSFK + SDSSAAV NNG +Q+ D+ QNL L D + DIA EF+E+G F SDLE++M Y GWK
Sbjct: 409 LNEIKFGSGVIDELLFLDLPRESRLPSGIMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRVVAPQVNQLLHVAQKCQSTISESGSDGVSQQDLQANSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKAGPIEGLKSYPRHAT-AKLQLQKMQEMEQFASVQGLPTDRNGAQSLTTDRNTLNKLMALHPGANNHVNSNNQMAGRGALSGSAQAALALTNYQNLLMRQNSMNSNSCSLQQEAASPFSNSNQSPSSNFQGAANFIPGSMQNLSVSGFSSPHLPQQPQQLQQRSLSSNSLLQQNLPRSSHGNQTLQPQMIQQLLQEMSSNSG-GGV--QQHSISGQSGNDGVARNGLGFGSN-HLATAPTASTVSISTGGPAPSRSNSFKAPANSDSSAAVNNNGFNQKVPDLHQNLHLQDVIVNDIAHEFTENGFFNSDLEDNMGY-GWKA 893
HSP 2 Score: 123.635 bits (309), Expect = 8.066e-27
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 0
Query: 1 MAPSRVAGGLAGLANSSTNSGIFFQGDRQSHVVGNSHLSSFGNSINSN-SGNLRSNMGPNSGDVSNTLLNSVAASGPSVGASSLVTDANSGLSVGPNLQRSASFNTDSYMR 110
MAPSRVAG LA SS++SGIFFQGD QS + NSHLSS + +++ G R N+GP SGD++N +LNSVA SGPSVGASSLVTDANS LS GP+LQRSAS NT+SYMR
Sbjct: 18 MAPSRVAGALA---QSSSSSGIFFQGDGQSQGLVNSHLSSSFGNSSNSIPGTGRPNLGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMR 125
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AG60 | E-Value: 0.000e+0, PID: 65.59 | (Putative transcriptional regulator SLK2 {ECO:0000... [more] |
| A0A5J5ATT5 | E-Value: 0.000e+0, PID: 66.81 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8533... [more] |
| A0A5B7AJM8 | E-Value: 7.762e-31, PID: 67.01 | (Putative transcriptional regulator SLK2 {ECO:0000... [more] |
| A0A5B7AG29 | E-Value: 2.579e-30, PID: 64.39 | (Putative SEUSS-like 2 {ECO:0000313|EMBL:MPA55700.... [more] |
| A0A5J5BBV1 | E-Value: 4.673e-28, PID: 66.74 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8539... [more] |
| A0A2K1YD61 | E-Value: 0.000e+0, PID: 64.66 | (Uncharacterized protein {ECO:0000313|EMBL:PNT1097... [more] |
| A0A5N5KPY6 | E-Value: 2.040e-26, PID: 63.54 | (Uncharacterized protein {ECO:0000313|EMBL:KAB5532... [more] |
| A0A4V6A988 | E-Value: 2.680e-25, PID: 64.32 | (Uncharacterized protein {ECO:0000313|EMBL:TKS0448... [more] |
| A0A837AV31 | E-Value: 1.758e-26, PID: 63.95 | (Transcriptional regulator SLK {ECO:0000313|EMBL:K... [more] |
| A0A835JP41 | E-Value: 8.066e-27, PID: 63.95 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9671... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |