Resource Type:
Polypeptide
Name:
DCAR_019639
Identifier:
DCAR_019639.mRNA-protein
Sequence:
MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGK
IPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFT
ETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGM
GVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTM
IAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTM
MHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYAS
DASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEG
LQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYL
AIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFPNPESKNEDDG
YILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDL
ETQA*
Sequence Length:
505
Sequence Checksum:
d5a032ae47ced493970b26261cca6f26
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_019639, derives from mRNA, DCAR_019639. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX0 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52078.1}))
HSP 1 Score: 1036.94 bits (2680), Expect = 0.000e+0
Identity = 496/504 (98.41%), Postives = 501/504 (99.40%), Query Frame = 0
Match: Q2VEX0 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52078.1}))
HSP 1 Score: 1036.94 bits (2680), Expect = 0.000e+0
Identity = 496/504 (98.41%), Postives = 501/504 (99.40%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFPNPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVESAIISRELQ PLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGI+WV+VPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIR+PILSC DQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEK+GGEPLFFPNP+SKNEDDGYILAFVHDEKNWESELQIVNA TLELEASIKLPSRVPYGFHGTFISAKDLETQA
Sbjct: 70 MALDAVESAIISRELQLPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIRWVDVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRKPILSCYDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKFGGEPLFFPNPDSKNEDDGYILAFVHDEKNWESELQIVNAATLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 431/505 (85.35%), Postives = 470/505 (93.07%), Query Frame = 0
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0
Identity = 431/505 (85.35%), Postives = 470/505 (93.07%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVE+ I +RE +HPLPKT DP++QIAGNFAPVPEQPV+ L V+GKIPECI+GVYVRNGANPH EP AGHH FDGDGMVHAVQFK G+ASYACRFTETERL+QER+LG+P FPKAIGELHGHSGIARLALFYARG+FGL+DH G GVANAGLVYFN+RLLAMSEDDLPYHV + SGDL+T+GRYNFDGQLD+TMIAHPKIDP+T EL ALSYNVIQKPYLKYFR S DG KS+DVDI+L+DPTMMHDFAITENFVVIPDQQVVFK+SEMIQGGSPVVYDKNKVSRFGVLDKYA D SGIKWVEVPDCFCFHLWNAWE++E+DE+VVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKS R+PI+S +DQVNLEAGMVNKN LGRKTQFAYLAIAEPWPKVSGFAKVDL +GQV KFFYGD KYGGEPLF P NP S+NEDDGYILAFVHDEK W+SELQIVNA+TLELEA+++LPSRVPYGFHGTFISAKDLE+QA
Sbjct: 84 MALDAVENVIAAREKEHPLPKTADPQVQIAGNFAPVPEQPVRHRLPVTGKIPECISGVYVRNGANPHLEPTAGHHFFDGDGMVHAVQFKEGAASYACRFTETERLIQERNLGKPVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVEITSSGDLKTVGRYNFDGQLDTTMIAHPKIDPDTKELIALSYNVIQKPYLKYFRVSPDGVKSDDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKNKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDEESDEIVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSTRKPIMSSEDQVNLEAGMVNKNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFTGQVQKFFYGDHKYGGEPLFLPKNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVQLPSRVPYGFHGTFISAKDLESQA 588
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B7G9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001478.1}))
HSP 1 Score: 910.598 bits (2352), Expect = 0.000e+0
Identity = 436/504 (86.51%), Postives = 474/504 (94.05%), Query Frame = 0
Match: A0A6L5B7G9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001478.1}))
HSP 1 Score: 910.598 bits (2352), Expect = 0.000e+0
Identity = 436/504 (86.51%), Postives = 474/504 (94.05%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQ 503
MALDAVE+ +ISRE+QH LPKTTDP+IQIAGNFAPVPE P+ NL ++GKIPECI GVYVRNGANPHF+P AGHHLFDGDGMVHAV+FKNG+ASYACRFTETERLVQE LGRPAFPKAIGELHGHSG+ARLALFY RG+FGL+DH HGMGVANAGLVYFN++LLAMSEDDLPYH+++ PSGDL+T+ RY+FD QLDSTMIAHPKIDPET+ELFALSYNVIQKPYLKYFRFS DG+KS+DVDIQLS+PTMMHDFAITE FVVIPDQQVVFK+ EMIQGGSPVVYDKNKVSRFG+LDKYASDAS IKWVEVP+CFCFHLWNAWE++ET+EVVVIGSCMTPADSIFNE D+GLQSVLSEIRLNLKTGKS RRPILS D+QVNLEAGMVNKN LGRKTQFAYLAIAEPWPKVSGFAKVDL SGQV KFFYGDEK+GGEPLF P +P S+NEDDGYILAFVHDEK W+SELQI+NAVTLELEASIKLPSRVPYGFHGTFISAKDL TQ
Sbjct: 1 MALDAVETTLISREIQHQLPKTTDPKIQIAGNFAPVPEHPISHNLPITGKIPECIKGVYVRNGANPHFQPTAGHHLFDGDGMVHAVKFKNGTASYACRFTETERLVQEHKLGRPAFPKAIGELHGHSGLARLALFYTRGLFGLIDHSHGMGVANAGLVYFNNKLLAMSEDDLPYHLQITPSGDLKTVERYDFDNQLDSTMIAHPKIDPETNELFALSYNVIQKPYLKYFRFSPDGTKSKDVDIQLSEPTMMHDFAITEKFVVIPDQQVVFKIFEMIQGGSPVVYDKNKVSRFGILDKYASDASSIKWVEVPECFCFHLWNAWEDEETEEVVVIGSCMTPADSIFNESDQGLQSVLSEIRLNLKTGKSTRRPILSSDEQVNLEAGMVNKNKLGRKTQFAYLAIAEPWPKVSGFAKVDLLSGQVKKFFYGDEKFGGEPLFLPRDPNSENEDDGYILAFVHDEKMWKSELQIINAVTLELEASIKLPSRVPYGFHGTFISAKDLATQ 504
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 423/505 (83.76%), Postives = 463/505 (91.68%), Query Frame = 0
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 423/505 (83.76%), Postives = 463/505 (91.68%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVE+ IIS+E HPLPKT DP++QI+GNFAPV EQPV+ +L V+GKIPECI+GVYVRNGANPHFEP GHH FDGDGMVHAV+FK+G ASYACR+TETERL+QER+LGR FPKAIGELHGHSGIARLALFYARG+FGL+DH G GVANAGLVYFN+RLLAMSEDDLPYHV++ P GDL T+ RY+FDGQLDSTMIAHPKIDPET+EL AL+YNVIQKPYLKYFR S DG KS DVDI+L+DPTMMHDFAITENFVVIPDQQVVFK+SEMIQGGSPVVYDK KVSRFGVLDKYA D SGIKWVEVPDCFCFHLWNAWE+KE+DE+VVIGSCMTPADSIFNECDEGL+SVLSEIRLNLKTGKS RR I+S +DQVNLEAGMVN N LGRKTQFAYLAIAEPWPKVSGFAKVDL +G++ KFFYGD KYGGEPLF P NP S+NEDDGYILAFVHDEK W+SELQIVNA+TLELEA++KLPSRVPYGFHGTFIS KDLE QA
Sbjct: 84 MALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNINKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFISEKDLEKQA 588
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W5QL26 ((9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|EMBL:AFO85470.1}))
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 414/506 (81.82%), Postives = 460/506 (90.91%), Query Frame = 0
Match: W5QL26 ((9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|EMBL:AFO85470.1}))
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 414/506 (81.82%), Postives = 460/506 (90.91%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSC-DDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVES + EL+HPLPKT DP +QI+GNFAPVPE PV Q+L V+GKIP+C+NGVYVRNGANP FEP AGHH FDGDGMVHAVQFKNGSASYACRFTETERLVQE++LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH +G GVANAGLVYFN+RLLAMSEDDLPYHVRV +GDLET GR++FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS DV+I + DPTMMHDFAITE FVVIPDQQVVFKMSEMI+GGSPVVYDKNKVSRFG+LDKYA D SG+KWVEVPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS R+ ++ ++QVNLEAGMVN+N LGRKTQ+AYLAIAEPWPKVSGFAKVDL +G++NKFFYGD KYGGEPLF P +P SK+EDDGYILAFVHDEK W+SELQIVNA+TL+LEA++KLPSRVPYGFHGTFI+AKDL QA
Sbjct: 102 MALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDELVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKALIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 607
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7EBR7 ((9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:AIY62759.1}))
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 414/506 (81.82%), Postives = 460/506 (90.91%), Query Frame = 0
Match: A0A0A7EBR7 ((9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:AIY62759.1}))
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 414/506 (81.82%), Postives = 460/506 (90.91%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSC-DDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVES + EL+HPLPKT DP +QI+GNFAPVPE PV Q+L V+GKIP+C+NGVYVRNGANP FEP AGHH FDGDGMVHAVQFKNGSASYACRFTETERLVQE++LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH +G GVANAGLVYFN+RLLAMSEDDLPYHVRV +GDLET GR++FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS DV+I + DPTMMHDFAITE FVVIPDQQVVFKMSEMI+GGSPVVYDKNKVSRFG+LDKYA D SG+KWVEVPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS R+ ++ ++QVNLEAGMVN+N LGRKTQ+AYLAIAEPWPKVSGFAKVDL +G++NKFFYGD KYGGEPLF P +P SK+EDDGYILAFVHDEK W+SELQIVNA+TL+LEA++KLPSRVPYGFHGTFI+AKDL QA
Sbjct: 103 MALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDELVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKALIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 608
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 885.945 bits (2288), Expect = 0.000e+0
Identity = 414/506 (81.82%), Postives = 460/506 (90.91%), Query Frame = 0
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 885.945 bits (2288), Expect = 0.000e+0
Identity = 414/506 (81.82%), Postives = 460/506 (90.91%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSC-DDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVES + EL+HPLPKT DP +QI+GNFAPVPE PV Q+L V+GKIP+C+NGVYVRNGANP FEP AGHH FDGDGMVHAV+FKNGSASYACRFTETERLVQE++LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH +G GVANAGLVYFN+RLLAMSEDDLPYHVRV +GDLET GR++FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS DV+I + DPTMMHDFAITE FVVIPDQQVVFKMSEMI+GGSPVVYDKNKVSRFG+LDKYA D SG+KWVEVPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS R+ I+ ++QVNLEAGMVN+N LGRKTQ+AYLAIAEPWPKVSGFAKVDL +G++NKFFYGD KYGGEPLF P +P SK+EDDGYILAFVHDEK W+SELQIVNA+TL+LEA++KLPSRVPYGFHGTFI+AKDL QA
Sbjct: 102 MALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVEFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKAIIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 607
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R3TVA1 ((9-cis-epoxycarotenoid dioxygenase-3 {ECO:0000313|EMBL:AVQ04673.1}))
HSP 1 Score: 885.56 bits (2287), Expect = 0.000e+0
Identity = 418/506 (82.61%), Postives = 459/506 (90.71%), Query Frame = 0
Match: A0A2R3TVA1 ((9-cis-epoxycarotenoid dioxygenase-3 {ECO:0000313|EMBL:AVQ04673.1}))
HSP 1 Score: 885.56 bits (2287), Expect = 0.000e+0
Identity = 418/506 (82.61%), Postives = 459/506 (90.71%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSC-DDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MA DAVESA+ +REL+HPLPKT DP +QIAGNFAPVPEQPV+ L V+GKIP I GVYVRNGANP FEP AGHH FDGDGM+HAVQFK GSASYACRFTET+RLVQE SLGRP FPKAIGELHGHSGIARL LFYARGMFGLLDH G GVANAGLVYFN+RLLAMSEDDLPYHVRV PSGDL+T+ RY+FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYF FS +G KS+DV+I + PTMMHDFAITENFVVIPDQQVVFKMSEMI+GGSPVVYDK+KVSRFGVL+KYA DASGIKWVEVPDCFCFHLWNAWEE E+DE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS RRPI+S +DQVNLEAGMVN+N LGRKT++AYLAIAEPWPKVSGFAKVDL +G+V K+ YGDEKYGGEPLF P +P S+ EDDG++LAFVHDEKNWESEL+IVNA+TL+LEAS+KLPSRVPYGFHGTFISAKDL QA
Sbjct: 110 MAFDAVESALTARELEHPLPKTADPRVQIAGNFAPVPEQPVRHELPVTGKIPNSIQGVYVRNGANPLFEPAAGHHFFDGDGMIHAVQFKKGSASYACRFTETQRLVQELSLGRPVFPKAIGELHGHSGIARLMLFYARGMFGLLDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTVERYSFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFVFSRNGEKSKDVEIPVPQPTMMHDFAITENFVVIPDQQVVFKMSEMIRGGSPVVYDKDKVSRFGVLNKYAEDASGIKWVEVPDCFCFHLWNAWEEPESDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRRPIISVPEDQVNLEAGMVNRNKLGRKTRYAYLAIAEPWPKVSGFAKVDLFTGEVKKYIYGDEKYGGEPLFLPRDPNSEAEDDGFVLAFVHDEKNWESELRIVNAMTLQLEASVKLPSRVPYGFHGTFISAKDLANQA 615
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3G2LDH0 ((9-cis-epoxycarotenoid dioxygenase {ECO:0000313|EMBL:AYN70308.1}))
HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 416/505 (82.38%), Postives = 460/505 (91.09%), Query Frame = 0
Match: A0A3G2LDH0 ((9-cis-epoxycarotenoid dioxygenase {ECO:0000313|EMBL:AYN70308.1}))
HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 416/505 (82.38%), Postives = 460/505 (91.09%), Query Frame = 0
Query: 1 MALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
MALDAVE A++S E QHPLPKT DP IQIAGNFAPVPEQPV++NLSVSGKIP+CI GVYVRNGANP FEP AGHHLFDGDGMVHAVQ K+GSASYACRFTET+RLVQE+ LGRP FPKAIGELHGHSGIARL LFYARG+ GL+DH++G GVANAGLVYFN RLLAMSEDDLPYHVRV PSGDL+T GRYNF GQL STMIAHPK+DP + ELFALSY+V+QKPYLKYFRFS G KS DV+I L++PTMMHDFAITENFVVIPDQQVVFK+ EMI+GGSPV+YDK+K+SRFG+LDK A DASGI+WVE PDCFCFHLWNAWEE E+DEVVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS RRPILS DQVNLEAGMVN+NMLGRKTQFAYLA+AEPWPKVSGFAKVDLS+G++ KF YG+ KYGGEPLF P +P S+ EDDGY+LAFVHDEK W+SEL IV+A+TL+LEAS+KLPSRVPYGFHGTFI+AKDLE QA
Sbjct: 68 MALDAVEGALVSNERQHPLPKTADPRIQIAGNFAPVPEQPVRKNLSVSGKIPKCIEGVYVRNGANPLFEPVAGHHLFDGDGMVHAVQIKDGSASYACRFTETQRLVQEKELGRPVFPKAIGELHGHSGIARLLLFYARGLCGLVDHQNGTGVANAGLVYFNGRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFGGQLKSTMIAHPKVDPVSGELFALSYDVVQKPYLKYFRFSPTGKKSPDVEIPLAEPTMMHDFAITENFVVIPDQQVVFKLPEMIRGGSPVMYDKSKMSRFGILDKNAKDASGIRWVEAPDCFCFHLWNAWEEPESDEVVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRRPILSNSDQVNLEAGMVNRNMLGRKTQFAYLAVAEPWPKVSGFAKVDLSTGEMKKFIYGENKYGGEPLFLPRDPNSEKEDDGYVLAFVHDEKTWKSELIIVDAMTLKLEASVKLPSRVPYGFHGTFINAKDLEKQA 572
BLAST of DCAR_019639 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R4SC59 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AVZ45847.1}) (1.13.11.51 {ECO:0000313|EMBL:AVZ45847.1}))
HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 417/503 (82.90%), Postives = 456/503 (90.66%), Query Frame = 0
Match: A0A2R4SC59 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AVZ45847.1}) (1.13.11.51 {ECO:0000313|EMBL:AVZ45847.1}))
HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 417/503 (82.90%), Postives = 456/503 (90.66%), Query Frame = 0
Query: 3 LDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 504
LDAVE+ +++RE +HPLPKT DP +QI+GNFAPVPEQPV+ +L V+GKIPECI GVYVRNGANP FEP AGHH FDGDGMVHAV+ + G+ASYACRFTET+R VQER LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH HG GVANAGLVYFN RLLAMSEDDLPYH+RV PSGDLET+GRYNFD QL++TMIAHPK+DP + ELFALSYNVIQKPYLKYFRFS G KS D++I LS+ TMMHDFAITE FVVIPDQQVVFK+ EMI+GGSPVVYDKNKVSRFG+LDKYA+D+SGIKWVE PDCFCFHLWNAWEE ETDEVVVIGSCMTP DSIFNECDEGLQSVLSEIRLNLKTGKS RRPI+S +QVNLEAGMVN+N LGRKTQFAYLAIAEPWPKVSGFAKVDL SG+VNKF YGD+KYGGEPLF P +P S+NEDDGYILAFVHDEK W+SELQIVNA TLELEASIKLPSRVPYGFHGTF+SAKDL QA
Sbjct: 104 LDAVETGLVAREKEHPLPKTADPGVQISGNFAPVPEQPVRHHLPVTGKIPECIEGVYVRNGANPLFEPVAGHHFFDGDGMVHAVELRGGAASYACRFTETQRFVQERDLGRPVFPKAIGELHGHSGIARLLLFYARGLFGLVDHCHGTGVANAGLVYFNGRLLAMSEDDLPYHIRVTPSGDLETVGRYNFDDQLETTMIAHPKLDPISGELFALSYNVIQKPYLKYFRFSPSGEKSPDIEIPLSESTMMHDFAITERFVVIPDQQVVFKLPEMIRGGSPVVYDKNKVSRFGILDKYATDSSGIKWVEAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNECDEGLQSVLSEIRLNLKTGKSTRRPIMSESNQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFSGEVNKFMYGDDKYGGEPLFLPRDPNSENEDDGYILAFVHDEKAWKSELQIVNATTLELEASIKLPSRVPYGFHGTFMSAKDLAKQA 606
| Match Name | Stats | Description |
|---|---|---|
| Q2VEX0 | E-Value: 0.000e+0, PID: 98.41 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| Q2VEW9 | E-Value: 0.000e+0, PID: 85.35 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| A0A6L5B7G9 | E-Value: 0.000e+0, PID: 86.51 | (Uncharacterized protein {ECO:0000313|EMBL:KAF1001... [more] |
| Q2VEW8 | E-Value: 0.000e+0, PID: 83.76 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| W5QL26 | E-Value: 0.000e+0, PID: 81.82 | (9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|E... [more] |
| A0A0A7EBR7 | E-Value: 0.000e+0, PID: 81.82 | (9-cis epoxycarotenoid dioxygenase {ECO:0000313|EM... [more] |
| A0A0A7DW45 | E-Value: 0.000e+0, PID: 81.82 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
| A0A2R3TVA1 | E-Value: 0.000e+0, PID: 82.61 | (9-cis-epoxycarotenoid dioxygenase-3 {ECO:0000313|... [more] |
| A0A3G2LDH0 | E-Value: 0.000e+0, PID: 82.38 | (9-cis-epoxycarotenoid dioxygenase {ECO:0000313|EM... [more] |
| A0A2R4SC59 | E-Value: 0.000e+0, PID: 82.90 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |