Resource Type:
Polypeptide
Name:
DCAR_020544
Identifier:
DCAR_020544.mRNA-protein
Sequence:
MKVMDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVN
WGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGP
AGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTT
WSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVK
VVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI
VAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDR
IFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGP
LPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKG
ALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFD
LEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMV
NNLIKDRE*
Sequence Length:
509
Sequence Checksum:
5eff231b1dff5d3586f4ed5df6de9cda
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_020544, derives from mRNA, DCAR_020544. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX7 ((Putative lycopene beta cyclase {ECO:0000313|EMBL:ABB52071.1}))
HSP 1 Score: 1049.65 bits (2713), Expect = 0.000e+0
Identity = 507/508 (99.80%), Postives = 508/508 (100.00%), Query Frame = 0
Match: Q2VEX7 ((Putative lycopene beta cyclase {ECO:0000313|EMBL:ABB52071.1}))
HSP 1 Score: 1049.65 bits (2713), Expect = 0.000e+0
Identity = 507/508 (99.80%), Postives = 508/508 (100.00%), Query Frame = 0
Query: 1 MKVMDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MKVMDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLIC+DGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE
Sbjct: 1 MKVMDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICDDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZKL5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8518042.1}))
HSP 1 Score: 926.006 bits (2392), Expect = 0.000e+0
Identity = 442/505 (87.52%), Postives = 471/505 (93.27%), Query Frame = 0
Match: A0A5J4ZKL5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8518042.1}))
HSP 1 Score: 926.006 bits (2392), Expect = 0.000e+0
Identity = 442/505 (87.52%), Postives = 471/505 (93.27%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLKTHNKLEF +P HGF +KV LS K +N ELRFG R+S V W KNG VKASSSALLELV ETKKENL+F+LP+YDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFE+MDLLDCLDTTWS A+V+IDDQ+TK LGRPYGRVNRKQLKSKMMQKCI NGVKFHQAKV+KV+HEE+KSLLICNDGVT+QA VVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDVNKM+FMDWRDSHLN N ELKERNS+IPTFLYAMPFSS RIFLEETSLVARPGL M DIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VAN+IVQYL G+ + LGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDL GTRRFF+AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS ASNTSRIEIM KGT+PLVNM+NNL++DR+
Sbjct: 1 MDTLLKTHNKLEFLHPHHGFAEKVSNLSSSKPQNLELRFGRRKSYVKWSKNGCVKASSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFESMDLLDCLDTTWSGAVVFIDDQSTKNLGRPYGRVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVNKMVFMDWRDSHLNNNMELKERNSRIPTFLYAMPFSSQRIFLEETSLVARPGLRMEDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYL-GADRNLLGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLQGTRRFFNAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSQASNTSRIEIMGKGTLPLVNMINNLLQDRD 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZHK6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8518035.1}))
HSP 1 Score: 924.465 bits (2388), Expect = 0.000e+0
Identity = 441/505 (87.33%), Postives = 470/505 (93.07%), Query Frame = 0
Match: A0A5J4ZHK6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8518035.1}))
HSP 1 Score: 924.465 bits (2388), Expect = 0.000e+0
Identity = 441/505 (87.33%), Postives = 470/505 (93.07%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLKTHNKLEF +P HGF +KV LS K +N ELRFG R+S V W KNG VKASSSALLELV ETKKENL+F+LP+YDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFE+MDLLDCLDTTWS A+V+IDDQ+TK LGRPYGRVNRKQLK KMMQKCI NGVKFHQAKV+KV+HEE+KSLLICNDGVT+QA VVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDVNKM+FMDWRDSHLN N ELKERNS+IPTFLYAMPFSS RIFLEETSLVARPGL M DIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VAN+IVQYL G+ + LGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDL GTRRFF+AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS ASNTSRIEIM KGT+PLVNM+NNL++DR+
Sbjct: 1 MDTLLKTHNKLEFLHPHHGFAEKVSNLSSSKPQNLELRFGRRKSYVKWSKNGCVKASSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFESMDLLDCLDTTWSGAVVFIDDQSTKNLGRPYGRVNRKQLKLKMMQKCILNGVKFHQAKVIKVIHEESKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVNKMVFMDWRDSHLNNNMELKERNSRIPTFLYAMPFSSQRIFLEETSLVARPGLQMEDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYL-GADRNLLGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLQGTRRFFNAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSQASNTSRIEIMGKGTLPLVNMINNLLQDRD 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438DKL3 ((Lycopene beta cyclase, chloroplastic {ECO:0000313|EMBL:RVW36011.1}))
HSP 1 Score: 923.694 bits (2386), Expect = 0.000e+0
Identity = 435/505 (86.14%), Postives = 474/505 (93.86%), Query Frame = 0
Match: A0A438DKL3 ((Lycopene beta cyclase, chloroplastic {ECO:0000313|EMBL:RVW36011.1}))
HSP 1 Score: 923.694 bits (2386), Expect = 0.000e+0
Identity = 435/505 (86.14%), Postives = 474/505 (93.86%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLKTHNKLEF +P+HGF +K+G L+ K +NQE RFG ++SN+ WG+NG VKASSSALLELV ETKKENLEF+LP+YDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+V+IDD + K+LGRPY RVNRKQLKSKMMQKCI NGVKFHQAKV+KV+HEE+KSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDV+KM+FMDWRDSHLN N ELK RNS+IPTFLYAMPFSS+RIFLEETSLVARPG+ M DIQERMVARLRHLGIKVKSIEEDERC+IPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VAN+IVQYL GS + GNELS+EVW+DLWPIERRRQREFFCFGMDILLKLDL GTRRFF AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS+ASNTSRIEIMAKGT+PL+NM+NNLI+D++
Sbjct: 1 MDTLLKTHNKLEFLHPLHGFAEKLGNLTFPKLQNQEFRFGPKKSNLKWGRNGCVKASSSALLELVPETKKENLEFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDHSKKDLGRPYARVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNNNMELKNRNSRIPTFLYAMPFSSNRIFLEETSLVARPGVPMEDIQERMVARLRHLGIKVKSIEEDERCIIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYL-GSDRSFFGNELSSEVWRDLWPIERRRQREFFCFGMDILLKLDLQGTRRFFDAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSHASNTSRIEIMAKGTLPLINMINNLIQDKD 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZQ95 ((Uncharacterized protein {ECO:0000313|EMBL:MPA46717.1}))
HSP 1 Score: 923.694 bits (2386), Expect = 0.000e+0
Identity = 439/505 (86.93%), Postives = 474/505 (93.86%), Query Frame = 0
Match: A0A5B6ZQ95 ((Uncharacterized protein {ECO:0000313|EMBL:MPA46717.1}))
HSP 1 Score: 923.694 bits (2386), Expect = 0.000e+0
Identity = 439/505 (86.93%), Postives = 474/505 (93.86%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLK HNKLEF +P+HGF +KV TLS K +N ELR+G RRS V W KNG VKASSSALLELV ETKKENL+F+LP+YDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+V+I+D++TK+LGRPYGRVNRKQLKSKMM+KCI NGVKFHQAKV+KV+HEE+KSLLICNDGVT+QA +VLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFD+NKM+FMDWRDSHLN N ELKERNS+IPTFLYAMPFSS RIFLEETSLVARPGL M DIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VAN+IV+YL GS + LGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDL GTRRFF+AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS+ASNTSRIEIMAKGT+PLVNM+NNL++D E
Sbjct: 1 MDTLLKIHNKLEFLHPLHGFAEKVSTLSFSKPQNLELRYGRRRSYVKWSKNGCVKASSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFINDKSTKDLGRPYGRVNRKQLKSKMMKKCILNGVKFHQAKVIKVIHEESKSLLICNDGVTVQATIVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDINKMVFMDWRDSHLNNNMELKERNSRIPTFLYAMPFSSQRIFLEETSLVARPGLCMEDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVRYL-GSDRNLLGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLQGTRRFFNAFFDLEPRYWHGFLSSRLFLPELLFFGLSLFSHASNTSRIEIMAKGTLPLVNMINNLLQDEE 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I7FM98 ((Lycopene beta-cyclase 2 {ECO:0000313|EMBL:AFP28799.1}))
HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 433/505 (85.74%), Postives = 472/505 (93.47%), Query Frame = 0
Match: I7FM98 ((Lycopene beta-cyclase 2 {ECO:0000313|EMBL:AFP28799.1}))
HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 433/505 (85.74%), Postives = 472/505 (93.47%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLKTHNKLEF +P+HGF +K+G L+ K +NQE RFG ++SN+ WG+NG VKASSSALLELV ETKKENLEF+LP+YDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+V+IDD + K+LGRPY RVNRKQLKSKMMQKCI NGVKFHQAKV+KV+HEE+KSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDV+KM+FMDWRDSHLN N ELK RN +IPTFLYAMPFSS+RIFLEETSLVARPG+ M DIQERMVARLRHLGIKVKSIEEDERC+IPMGGPLPVLPQRVVGIGGTAGMVHPSTGY VARTLAAAP+VAN+IVQYL GS + GNELS+EVW+DLWPIERRRQREFFCFGMDILLKLDL GTRRFF AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS+ASNTSRIEIMAKGT+PL+NM+NNLI+D++
Sbjct: 1 MDTLLKTHNKLEFLHPLHGFAEKLGNLTFPKLQNQEFRFGPKKSNLKWGRNGCVKASSSALLELVPETKKENLEFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDHSKKDLGRPYARVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNNNMELKNRNGRIPTFLYAMPFSSNRIFLEETSLVARPGVPMEDIQERMVARLRHLGIKVKSIEEDERCIIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYTVARTLAAAPIVANSIVQYL-GSDRSFFGNELSSEVWRDLWPIERRRQREFFCFGMDILLKLDLQGTRRFFDAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSHASNTSRIEIMAKGTLPLINMINNLIQDKD 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5AR21 ((Uncharacterized protein {ECO:0000313|EMBL:CAN69313.1}))
HSP 1 Score: 917.146 bits (2369), Expect = 0.000e+0
Identity = 433/505 (85.74%), Postives = 472/505 (93.47%), Query Frame = 0
Match: A5AR21 ((Uncharacterized protein {ECO:0000313|EMBL:CAN69313.1}))
HSP 1 Score: 917.146 bits (2369), Expect = 0.000e+0
Identity = 433/505 (85.74%), Postives = 472/505 (93.47%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLKTHNKLEF +P+HGF +K+G L+ K +NQE RFG ++SN+ W +NG VKASSSALLELV ETKKENLEF+LP+YDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+V+IDD + K+LGRPY RVNRK LKSKMMQKCI NGVKFHQAKV+KV+HEE+KSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDV+KM+FMDWRDSHLN N ELK RNS+IPTFLYAMPFSS+RIFLEETSLVARPG+ M DIQERMVARLRHLGIKVKSIEEDERC+IPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VAN+IVQYL GS + GNELS+EVW+DLWPIERRRQREFFCFGMDILLKLDL GTRRFF AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS+ASNTSRIEIMAKGT+PL+NM+NNLI+D++
Sbjct: 1 MDTLLKTHNKLEFLHPLHGFAEKLGNLTFPKLQNQEFRFGPKKSNLKWVRNGCVKASSSALLELVPETKKENLEFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDHSKKDLGRPYARVNRKLLKSKMMQKCILNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNNNMELKNRNSRIPTFLYAMPFSSNRIFLEETSLVARPGVPMEDIQERMVARLRHLGIKVKSIEEDERCIIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYL-GSDRSFFGNELSSEVWRDLWPIERRRQREFFCFGMDILLKLDLQGTRRFFDAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSHASNTSRIEIMAKGTLPLINMINNLIQDKD 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RH09 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8098681.1}))
HSP 1 Score: 910.983 bits (2353), Expect = 0.000e+0
Identity = 431/504 (85.52%), Postives = 471/504 (93.45%), Query Frame = 0
Match: A0A5N6RH09 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8098681.1}))
HSP 1 Score: 910.983 bits (2353), Expect = 0.000e+0
Identity = 431/504 (85.52%), Postives = 471/504 (93.45%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDR 507
MDTLLKTHNKL F +P++GF +KV S K +NQ+ RFG+++S++ WG+NG VKA SSALLELV ETKKE+L+F+LPLYD S GLVVDLAVVGGGPAGLAVAQQVSEAGL+V +IDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+V+IDDQ+ K L RPYGRVNRKQLKSKM+QKCISNGVKFHQAKV+KV+HEE+KSLLICNDGVT+QAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDV+KM+FMDWRDSHLNG+ +LKERNSKIPTFLYAMPFS++RIFLEETSLVARPG+ M +IQERMVARLRHLGIKVKSIEEDE CVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVAN+IVQYLG S +G GNELS+EVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFF AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS+ASNTSRIEIM KGTVPLV M+NNLI+DR
Sbjct: 1 MDTLLKTHNKLGFLHPLNGFSEKVSNSSSSKLQNQDFRFGNKKSHLKWGRNGFVKARSSALLELVPETKKESLDFELPLYDSSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDQSKKSLDRPYGRVNRKQLKSKMLQKCISNGVKFHQAKVIKVIHEESKSLLICNDGVTVQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNGDMKLKERNSKIPTFLYAMPFSTNRIFLEETSLVARPGVPMEEIQERMVARLRHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANSIVQYLGSSDRGLSGNELSSEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSHASNTSRIEIMGKGTVPLVRMINNLIQDR 504
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9F1K9 ((Uncharacterized protein {ECO:0000313|EMBL:SPC80985.1}))
HSP 1 Score: 909.827 bits (2350), Expect = 0.000e+0
Identity = 436/504 (86.51%), Postives = 471/504 (93.45%), Query Frame = 0
Match: A0A2N9F1K9 ((Uncharacterized protein {ECO:0000313|EMBL:SPC80985.1}))
HSP 1 Score: 909.827 bits (2350), Expect = 0.000e+0
Identity = 436/504 (86.51%), Postives = 471/504 (93.45%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSCLKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTK-ELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKD 506
MDTLLKT NKLEFFNP+HGF +KV S K +NQELRFGS+RS++ WG++G VKASSSALLELV ETKKE+L+F+LPLYDPS GLVVDLAVVGGGPAGLAVAQQVSEAGL+V +IDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+V++DDQ+ K +L RPYGRVNRKQLKSKM+QKCI+NGVKFHQAKV+KV+HEE KSLLICNDGVT+QA+VVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDV+KM+FMDWRDSHLN N ELKERNS+IPTFLYAMPFSSDRIFLEETSLVARPGL M DIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VANAIV+YL GS +G GN+LSAEVWKDLWPI+RRRQREFFCFGMDILLKLDLPGTRRFF AFFDLEP YWHGFLSSRLFLPEL FGLSLFS+ASN SRIEIMAKGTVPL NM+ NLIKD
Sbjct: 1 MDTLLKTPNKLEFFNPLHGFSEKVSNSSSSKLQNQELRFGSKRSHMRWGRSGCVKASSSALLELVPETKKESLDFELPLYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFVDDQSKKKDLDRPYGRVNRKQLKSKMLQKCITNGVKFHQAKVIKVIHEEFKSLLICNDGVTVQASVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNNNVELKERNSRIPTFLYAMPFSSDRIFLEETSLVARPGLPMEDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYL-GSDEGLPGNDLSAEVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELIVFGLSLFSHASNMSRIEIMAKGTVPLANMIKNLIKD 503
BLAST of DCAR_020544 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4BGA8 ((lycopene beta cyclase, chloroplastic/chromoplastic-like {ECO:0000313|RefSeq:XP_015898141.1, ECO:0000313|RefSeq:XP_015900637.1}))
HSP 1 Score: 905.975 bits (2340), Expect = 0.000e+0
Identity = 432/506 (85.38%), Postives = 470/506 (92.89%), Query Frame = 0
Match: A0A6P4BGA8 ((lycopene beta cyclase, chloroplastic/chromoplastic-like {ECO:0000313|RefSeq:XP_015898141.1, ECO:0000313|RefSeq:XP_015900637.1}))
HSP 1 Score: 905.975 bits (2340), Expect = 0.000e+0
Identity = 432/506 (85.38%), Postives = 470/506 (92.89%), Query Frame = 0
Query: 4 MDTLLKTHNKLEFFNPIHGFPDKVGTLSC-LKFRNQELRFGSRRSNVNWGKNGSVKASSSALLELVQETKKENLEFDLPLYDPSNGLVVDLAVVGGGPAGLAVAQQVSEAGLAVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAIVYIDDQTTKELGRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVVKVVHEEAKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVEEHPFDVNKMIFMDWRDSHLNGNTELKERNSKIPTFLYAMPFSSDRIFLEETSLVARPGLAMGDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIVQYLGGSKKGALGNELSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFSAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSNASNTSRIEIMAKGTVPLVNMVNNLIKDRE 508
MDTLLKTHNKLEF +P+HGF ++V S + +NQELRFG ++S++ G+ VKASSSALLELV ETKKENLEF+LPLYDPSNGLV+DLAVVGGGPAGLAVAQQVSEAGL+V SIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWS A+VYIDDQT K+LGRPYGRVNRKQLKSKM+Q+CISNGVKFHQ+KVVKV+HEE+KSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEVEEHPFDV+KM+FMDWRDSHLN N LKERNS+IPTFLYAMPFSS RIFLEETSLVARPGL+ DIQERMVARL+HLGI VKSIEEDE CVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VAN+IV+YL GS + GNELSA+VWKDLWPI+RRRQREFFCFGMDILLKLDL TRRFF AFFDLEPRYWHGFLSSRLFLPEL FFGLSLFS+ASNTSRIEIMAKGT+PLVNM+NNLI+DR+
Sbjct: 1 MDTLLKTHNKLEFLHPLHGFSERVSNYSNPSRLQNQELRFGPKKSHLKLGRTAFVKASSSALLELVPETKKENLEFELPLYDPSNGLVLDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDDQTKKDLGRPYGRVNRKQLKSKMLQRCISNGVKFHQSKVVKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNNNVGLKERNSRIPTFLYAMPFSSSRIFLEETSLVARPGLSFKDIQERMVARLKHLGINVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVKYL-GSDRSLPGNELSAQVWKDLWPIQRRRQREFFCFGMDILLKLDLEATRRFFDAFFDLEPRYWHGFLSSRLFLPELIFFGLSLFSHASNTSRIEIMAKGTLPLVNMINNLIRDRD 505
| Match Name | Stats | Description |
|---|---|---|
| Q2VEX7 | E-Value: 0.000e+0, PID: 99.80 | (Putative lycopene beta cyclase {ECO:0000313|EMBL:... [more] |
| A0A5J4ZKL5 | E-Value: 0.000e+0, PID: 87.52 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8518... [more] |
| A0A5J4ZHK6 | E-Value: 0.000e+0, PID: 87.33 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8518... [more] |
| A0A438DKL3 | E-Value: 0.000e+0, PID: 86.14 | (Lycopene beta cyclase, chloroplastic {ECO:0000313... [more] |
| A0A5B6ZQ95 | E-Value: 0.000e+0, PID: 86.93 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4671... [more] |
| I7FM98 | E-Value: 0.000e+0, PID: 85.74 | (Lycopene beta-cyclase 2 {ECO:0000313|EMBL:AFP2879... [more] |
| A5AR21 | E-Value: 0.000e+0, PID: 85.74 | (Uncharacterized protein {ECO:0000313|EMBL:CAN6931... [more] |
| A0A5N6RH09 | E-Value: 0.000e+0, PID: 85.52 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8098... [more] |
| A0A2N9F1K9 | E-Value: 0.000e+0, PID: 86.51 | (Uncharacterized protein {ECO:0000313|EMBL:SPC8098... [more] |
| A0A6P4BGA8 | E-Value: 0.000e+0, PID: 85.38 | (lycopene beta cyclase, chloroplastic/chromoplasti... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |