Resource Type:
Polypeptide
Name:
DCAR_023228
Identifier:
DCAR_023228.mRNA-protein
Sequence:
MVANKMRWPLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIY
GTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYK
EDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKG
MFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYAD
FCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSG
TEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKS
DEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKG
SADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAY
SYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQ
RVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVD
FKTLKRTPKMSAYWFQKMLSRKH*
Sequence Length:
524
Sequence Checksum:
ad7db2f3fbf3ac881efbf67dfa7194e2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_023228, derives from mRNA, DCAR_023228. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7FW21 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g119080.3.1}))
HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 385/495 (77.78%), Postives = 433/495 (87.47%), Query Frame = 0
Match: A0A3Q7FW21 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g119080.3.1}))
HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 385/495 (77.78%), Postives = 433/495 (87.47%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++G ITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLGWFLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKAI YVKE YGNPT+ILAENGMD GN+T+P L DT+R+NYY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L R+
Sbjct: 648 SPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRG-------------ITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAINYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRINYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKRQ 1129
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q8VWL8 ((Beta-mannosidase enzyme {ECO:0000313|EMBL:AAL37714.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 383/495 (77.37%), Postives = 432/495 (87.27%), Query Frame = 0
Match: Q8VWL8 ((Beta-mannosidase enzyme {ECO:0000313|EMBL:AAL37714.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 383/495 (77.37%), Postives = 432/495 (87.27%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
SPE+T LDTGGLSR+SFPK F +GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++G ITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLGWFLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKAI YVKE YGNPT+ILAENGMD GN+T+P L DT+R+NYY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TL+R PKMSAYWF+K+L R+
Sbjct: 31 SPENTILDTGGLSRESFPKGFTFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRG-------------ITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAINYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRINYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLRRYPKMSAYWFKKLLKRQ 512
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IDM7 ((Putative beta-glucosidase 44-like {ECO:0000313|EMBL:JAP30595.1}))
HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 384/506 (75.89%), Postives = 437/506 (86.36%), Query Frame = 0
Match: A0A0V0IDM7 ((Putative beta-glucosidase 44-like {ECO:0000313|EMBL:JAP30595.1}))
HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 384/506 (75.89%), Postives = 437/506 (86.36%), Query Frame = 0
Query: 17 LLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
+L + + SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++G ITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLGWFLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKA+ YVKE YGNPT+ILAENGMD GN+T+P L DT+R++YY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L R+
Sbjct: 18 VLTVHSENDDVSPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRG-------------ITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAVNYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRIDYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKRQ 510
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2C5L0 ((Uncharacterized protein {ECO:0000313|EMBL:TMW99973.1}))
HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 383/495 (77.37%), Postives = 431/495 (87.07%), Query Frame = 0
Match: A0A6N2C5L0 ((Uncharacterized protein {ECO:0000313|EMBL:TMW99973.1}))
HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 383/495 (77.37%), Postives = 431/495 (87.07%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++G ITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRY EKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLGWFLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKAI YVKE YGNPT+ILAENGMD GN+T+P L DT+R+NYY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L +
Sbjct: 31 SPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRG-------------ITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYHEKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAINYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRINYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKHQ 512
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A468 ((Beta-mannosidase {ECO:0000313|EnsemblPlants:PGSC0003DMT400014415}))
HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 383/506 (75.69%), Postives = 437/506 (86.36%), Query Frame = 0
Match: M1A468 ((Beta-mannosidase {ECO:0000313|EnsemblPlants:PGSC0003DMT400014415}))
HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 383/506 (75.69%), Postives = 437/506 (86.36%), Query Frame = 0
Query: 17 LLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
+L + + SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTG+VNWKGVAYY+RLI+YML++G ITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLGWFLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKA+ YVKE YGNPT+ILAENGMD GN+T+P L DT+R++YY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L R+
Sbjct: 18 VLTVHSENDDVSPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGEVNWKGVAYYNRLIDYMLKRG-------------ITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAVNYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRIDYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKRQ 510
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0R0IIZ3 ((Uncharacterized protein {ECO:0000313|EMBL:KRH39108.1, ECO:0000313|EnsemblPlants:KRH39108}))
HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 379/514 (73.74%), Postives = 437/514 (85.02%), Query Frame = 0
Match: A0A0R0IIZ3 ((Uncharacterized protein {ECO:0000313|EMBL:KRH39108.1, ECO:0000313|EnsemblPlants:KRH39108}))
HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 379/514 (73.74%), Postives = 437/514 (85.02%), Query Frame = 0
Query: 9 PLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
PL F + L+A AD E P++ DTGGLSRD+FPK F++GTATSAYQVEG AH+DGRG SIWDVF+++PG+ NN +GEV+VDQYHRYKEDIDLMA LNFDAYRFSISWSRIFPNGTG+VNWKGVAYY+RLINY+L+KG ITPYANL HYDLP AL+ERYNG L RQVVKDFADYA+FCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ YGNCTAG+SGTEPY+ AHNLIL HA+AVQRYR KYQ+ QKGRIGILLDFVWYEPLTR K+D +AAQRARDFH+GWF+HP+VYGEYPKT+QNIV +RLPKFT EEV IVKGS D +GINQYT F++ +K PGYQ DW GF Y KNGVPIGP+A SYWLY VPWG+YK++MY+KERYGNPT+IL+ENGMD PGNVT+P GL DT R+NYY+ Y+ QLKK VD+GANV+GYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF++++++K
Sbjct: 6 PLCFFITLLIAGADAAAE--PQTVRFDTGGLSRDTFPKGFLFGTATSAYQVEGMAHKDGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMASLNFDAYRFSISWSRIFPNGTGQVNWKGVAYYNRLINYLLEKG-------------ITPYANLYHYDLPLALEERYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVAHNLILSHAAAVQRYRAKYQEKQKGRIGILLDFVWYEPLTRSKADNFAAQRARDFHIGWFIHPLVYGEYPKTIQNIVGNRLPKFTSEEVKIVKGSIDFVGINQYTTFFIYDPHQSKPKVPGYQMDWNAGFAYAKNGVPIGPRANSYWLYNVPWGMYKSLMYIKERYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLITKK 504
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BLT5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542787.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 386/499 (77.35%), Postives = 433/499 (86.77%), Query Frame = 0
Match: A0A5J5BLT5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542787.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 386/499 (77.35%), Postives = 433/499 (86.77%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPP--GYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSR-KH 523
S ++ D GGLSR+SFPK F++GTATSAYQVEG A +DGRG SIWDVFL+ PGLEVNN++GEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYY+RLINYML++G ITPYANLNHYDLPQALQ+RY GWL +VVKDFADYADFCFK +GDRVKNW TFNEPRVVAALGYD+G+FAP RCS+ +GNCTAG+S TEPY+ AHNLILCHA+AVQRYR KYQK +KGRIGILLDFVWYEPLTR K+D YAAQRARDFH+GWF+HP+VYGEYP+TMQ IV DRLPKFTKEEV +VKGS D +GINQYT +YM + K+ P GYQ DW GF YE+ GVPIGP+AYSYWLY VPWGLYKA+MY+KERYGNPT+ILAENGMD PGN+T+P GL DT R+NYYRSY+ +LKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF+++L R KH
Sbjct: 26 SMKTVRFDNGGLSRESFPKGFVFGTATSAYQVEGMADKDGRGPSIWDVFLKIPGLEVNNSTGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYNRLINYMLKRG-------------ITPYANLNHYDLPQALQDRYMGWLSPKVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDDGFFAPGRCSKAFGNCTAGNSATEPYIVAHNLILCHAAAVQRYRGKYQKKEKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPLVYGEYPRTMQEIVGDRLPKFTKEEVKMVKGSMDYVGINQYTTYYM-YDPHRKTKPKDQGYQQDWNAGFAYERKGVPIGPRAYSYWLYNVPWGLYKAVMYIKERYGNPTIILAENGMDDPGNLTLPKGLHDTTRINYYRSYLTELKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLLRRNKH 510
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445J2H7 ((Beta-glucosidase 44 isoform A {ECO:0000313|EMBL:RZB92557.1}) (Beta-glucosidase 44 isoform B {ECO:0000313|EMBL:RZB92558.1}))
HSP 1 Score: 815.068 bits (2104), Expect = 0.000e+0
Identity = 378/514 (73.54%), Postives = 437/514 (85.02%), Query Frame = 0
Match: A0A445J2H7 ((Beta-glucosidase 44 isoform A {ECO:0000313|EMBL:RZB92557.1}) (Beta-glucosidase 44 isoform B {ECO:0000313|EMBL:RZB92558.1}))
HSP 1 Score: 815.068 bits (2104), Expect = 0.000e+0
Identity = 378/514 (73.54%), Postives = 437/514 (85.02%), Query Frame = 0
Query: 9 PLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
PL F + L+A AD E P++ DTGGLSRD+FPK F++GTATSAYQVEG AH+DGRG SIWDVF+++PG+ NN +GEV+VDQYHRYKEDIDLMA LNFDAYRFSISWSRIFPNGTG+VNWKGVAYY+RLINY+L+KG ITPYANL HYDLP AL+ERYNG L RQVVKDFADYA+FCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ YGNCTAG+SGTEPY+ AHNLIL HA+AVQRYR KYQ+ QKGRIGILLDFVWYEPLTR K+D +AAQRARDFH+GWF+HP+VYGEYPKT+QNIV +RLPKFT EEV IVKGS D +GINQYT F++ +K PGYQ DW GF Y KNGVPIGP+A SYWLY VPWG+YK+++Y+KERYGNPT+IL+ENGMD PGNVT+P GL DT R+NYY+ Y+ QLKK VD+GANV+GYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF++++++K
Sbjct: 6 PLCFFITLLIAGADAAAE--PQTVRFDTGGLSRDTFPKGFLFGTATSAYQVEGMAHKDGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMASLNFDAYRFSISWSRIFPNGTGQVNWKGVAYYNRLINYLLEKG-------------ITPYANLYHYDLPLALEERYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVAHNLILSHAAAVQRYRAKYQEKQKGRIGILLDFVWYEPLTRSKADNFAAQRARDFHIGWFIHPLVYGEYPKTIQNIVGNRLPKFTSEEVKIVKGSIDFVGINQYTTFFIYDPHQSKPKVPGYQMDWNAGFAYAKNGVPIGPRANSYWLYNVPWGMYKSLIYIKERYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLITKK 504
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BFG0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA67652.1}))
HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0
Identity = 390/528 (73.86%), Postives = 443/528 (83.90%), Query Frame = 0
Match: A0A5B7BFG0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA67652.1}))
HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0
Identity = 390/528 (73.86%), Postives = 443/528 (83.90%), Query Frame = 0
Query: 5 KMRWPLLFLVLYLLAL------ADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPP--GYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSR-KH 523
KMR L F +L L + ++ + S ++ DTGGLSR+ FPK F++GTATSAYQVEG A +DGRG SIWDVFL+ PGLE+NN+SG +TVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFP+GTGKVNWKGVAYY+RLINYML++G ITPYANLNHYDLPQALQ+RY GWL +VVKDFADYADFCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ +GNCTAG+S TEPY+ AHNLILCHA+AVQRYR KYQ+ QKGRIGILLDFVWYEP TR K+D YAAQRARDFH+GWF+HPIVYGEYP+TMQ IV DRLPKFTKEEV +VKGS D +GINQYTA+YM + K+ P GYQ DW VGF Y++ GVPIGP+AYSYWLY VPWGLYKA+MY+KE YGNPT+ILAENGMD PGN+T+P GL DT R+NYYRSY+ +LKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+++L R KH
Sbjct: 47 KMRTRLQFSLLAFLIIQCVANASEYGKDASMKTVRFDTGGLSREGFPKGFVFGTATSAYQVEGMADKDGRGPSIWDVFLKIPGLEINNSSGALTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPDGTGKVNWKGVAYYNRLINYMLKRG-------------ITPYANLNHYDLPQALQDRYMGWLSHKVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTAGNSATEPYIVAHNLILCHAAAVQRYRGKYQEKQKGRIGILLDFVWYEPHTRSKADNYAAQRARDFHVGWFIHPIVYGEYPRTMQEIVGDRLPKFTKEEVKMVKGSMDYVGINQYTAYYM-YDPHKKTKPKDLGYQQDWNVGFAYDRKGVPIGPRAYSYWLYNVPWGLYKAVMYIKEHYGNPTIILAENGMDDPGNLTLPKGLHDTARINYYRSYLTELKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFATLKRYPKMSAYWFKQLLGRNKH 560
BLAST of DCAR_023228 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C6TNP0 ((Uncharacterized protein {ECO:0000313|EMBL:ACU24532.1}))
HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0
Identity = 377/514 (73.35%), Postives = 435/514 (84.63%), Query Frame = 0
Match: C6TNP0 ((Uncharacterized protein {ECO:0000313|EMBL:ACU24532.1}))
HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0
Identity = 377/514 (73.35%), Postives = 435/514 (84.63%), Query Frame = 0
Query: 9 PLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGMFINYLTFVSPFCITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLGWFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 522
PL F + L+A AD E P++ DTGGLSRD+FPK F++GTATSAYQVEG AH+DGRG SIWDVF+++PG+ NN +GEV+VDQYHRYKEDIDLMA LNFDAYRFSISWSRIFPNGTG+VNWKGVAYY+RLINY+L+KG ITPYANL HYDLP AL+ERYNG L RQVVKDFADYA+FCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ YGNCTAG+SGTEPY+ AHNLIL HA+AVQRYR KYQ+ QKGRIGILLDFVWYEP TR K+D +AAQRARDFH+GWF+HP+VYGEYPKT+QNIV +RLPKFT EEV IVKGS D +GINQYT F++ +K PGYQ DW GF Y KNGVPIGP+A SYWLY V WG+YK++MY+KERYGNPT+IL+ENGMD PGNVT+P GL DT R+NYY+ Y+ QLKK VD+GANV+GYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF++++++K
Sbjct: 6 PLCFFITLLIAGADAAAE--PQTVRFDTGGLSRDTFPKGFLFGTATSAYQVEGMAHKDGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMASLNFDAYRFSISWSRIFPNGTGQVNWKGVAYYNRLINYLLEKG-------------ITPYANLYHYDLPLALEERYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVAHNLILSHAAAVQRYRAKYQEKQKGRIGILLDFVWYEPPTRSKADNFAAQRARDFHIGWFIHPLVYGEYPKTIQNIVGNRLPKFTSEEVKIVKGSIDFVGINQYTTFFIYDPHQSKPKVPGYQMDWNAGFAYAKNGVPIGPRANSYWLYNVLWGMYKSLMYIKERYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLITKK 504
| Match Name | Stats | Description |
|---|---|---|
| A0A3Q7FW21 | E-Value: 0.000e+0, PID: 77.78 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| Q8VWL8 | E-Value: 0.000e+0, PID: 77.37 | (Beta-mannosidase enzyme {ECO:0000313|EMBL:AAL3771... [more] |
| A0A0V0IDM7 | E-Value: 0.000e+0, PID: 75.89 | (Putative beta-glucosidase 44-like {ECO:0000313|EM... [more] |
| A0A6N2C5L0 | E-Value: 0.000e+0, PID: 77.37 | (Uncharacterized protein {ECO:0000313|EMBL:TMW9997... [more] |
| M1A468 | E-Value: 0.000e+0, PID: 75.69 | (Beta-mannosidase {ECO:0000313|EnsemblPlants:PGSC0... [more] |
| A0A0R0IIZ3 | E-Value: 0.000e+0, PID: 73.74 | (Uncharacterized protein {ECO:0000313|EMBL:KRH3910... [more] |
| A0A5J5BLT5 | E-Value: 0.000e+0, PID: 77.35 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| A0A445J2H7 | E-Value: 0.000e+0, PID: 73.54 | (Beta-glucosidase 44 isoform A {ECO:0000313|EMBL:R... [more] |
| A0A5B7BFG0 | E-Value: 0.000e+0, PID: 73.86 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6765... [more] |
| C6TNP0 | E-Value: 0.000e+0, PID: 73.35 | (Uncharacterized protein {ECO:0000313|EMBL:ACU2453... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |