MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSD
MSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY
ESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLV
KDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALA
LALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVA
YALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDY
ITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVA
ACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLE
RSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLT
PGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGP
GKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGE
DLVALQKKIGVIESNTPTGAELSLV*
Relationships |
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The polypeptide, DCAR_025321, derives from mRNA, DCAR_025321. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: Q2VEX8 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1193.72 bits (3087), Expect = 0.000e+0
Identity = 575/575 (100.00%), Postives = 575/575 (100.00%), Query Frame = 0
Query: 1 MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGAELSLV 575 MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGAELSLV Sbjct: 1 MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGAELSLV 575
Match: Q2VER6 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 523/575 (90.96%), Postives = 545/575 (94.78%), Query Frame = 0
Query: 1 MAAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGAELSLV 575 MAAA+SS+YFPAT DS S S RP R +++VRSDL++NVSDMS+NAPKGLFPPEP+ YRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSF DKRGNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVK+HTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNA+ALALSPVVRALVDPDGAM+DIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPD YLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKK+VKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLE+SRQLR AAGLDNLLY+PDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPN +IIERVTKQVL LFPSSQGLEVTWSSVVKI QSLYREGPGKDPFRPDQ+TPV NFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGE+L L+K I I+SNTPT AEL+LV Sbjct: 1 MAAASSSLYFPATFTADSPSFSFSARRPFKPKRM--MLLVRSDLDQNVSDMSSNAPKGLFPPEPQLYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFTDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMKDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDTYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKIVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLEKSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDQIIERVTKQVLTLFPSSQGLEVTWSSVVKIAQSLYREGPGKDPFRPDQKTPVGNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELTTLRKTIASIDSNTPTEAELTLV 573
Match: Q8H0Q6 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1040.02 bits (2688), Expect = 0.000e+0
Identity = 502/577 (87.00%), Postives = 533/577 (92.37%), Query Frame = 0
Query: 2 AAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRV--MVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGA-ELSLV 575 AA T S + TS +L RCR QL +V V+RSDL+++VSDM TNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDK+GNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGE+GELDFRFPVGAPLHGINAFLTTNQLKTYDKARNA+ALALSPVVRALVDPDGAM IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYI +KGGRFHLRWGCREILYEKS++G TY++G+AMSKATQKK+VKADAY+AACDVPGIKRLLPS WREWEFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLERSRQLR AAGLDNLLY+PDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN EII RV+KQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGE+L AL+K + I+S G ELSLV Sbjct: 18 AAGTRSSFHTTTS-------TLLRCRRSRQLTRLKVRKAVIRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKSANGDTYVTGLAMSKATQKKIVKADAYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKVLAAIQSIDNVGVDELSLV 587
Match: A0A2R6RBF8 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1038.48 bits (2684), Expect = 0.000e+0
Identity = 504/579 (87.05%), Postives = 538/579 (92.92%), Query Frame = 0
Query: 4 ATSSIYFPATS--RPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGA-----ELSLV 575 ATSS+ FPATS R D AGI LS R +L++ R VR L++ VSDMS NAPKGLFP EPEHY+GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVKDHTHTFVN+GGEIGELDFRFPVGAPLHGINAFL+TNQLKTYDKARNALALALSPVVRALVDPDGA+RDIR+LD+ISFS+WF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIF+LFATKTEASLLRMLKGSPDVYLSGPIR YIT KGGRFHLRWGCREIL+++S+DG+TY++GIAMSKATQKK+VKADAYVAACDVPGIKRL+P QWRE EFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLERSRQLR AAGL+NLLY+PDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPN EII+RV KQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV NFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGE+LVAL+KK+ ES TGA ELSLV Sbjct: 2 ATSSLCFPATSGLRTDVAGIVLSDRRRGTRLKSQR-FGVRCSLDEKVSDMSVNAPKGLFPLEPEHYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADKNLLVKDHTHTFVNRGGEIGELDFRFPVGAPLHGINAFLSTNQLKTYDKARNALALALSPVVRALVDPDGALRDIRDLDSISFSDWFMSKGGTRASIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILHKRSTDGETYVTGIAMSKATQKKIVKADAYVAACDVPGIKRLVPPQWRELEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLNNLLYTPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNDEIIKRVAKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVNNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEELVALRKKLAATESMALTGASYVTDELSLV 579
Match: U6BQI7 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1037.71 bits (2682), Expect = 0.000e+0
Identity = 500/577 (86.66%), Postives = 533/577 (92.37%), Query Frame = 0
Query: 2 AAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRV--MVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGA-ELSLV 575 AA T S + TS +L RCR QL +V V+RSDL+++VSDM TNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDK+GNHIEMGLHVFFGCYNNLFRLLKKVGA+KNLLVKDHTHTFVNKGGE+GELDFRFPVGAPLHGINAFLTTNQLKTYDKARNA+ALALSPVVRALVDPDGAM IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYI +KGGRFHLRWGCREILYEK+++G TY++G+AMSKATQKK+VKADAY+AACDVPGIKRLLPS WREWEFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLERSRQLR AAGLDNLLY+PDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN EII RV+KQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGE+L AL+K + I+S G ELSLV Sbjct: 18 AAGTRSSFHTTTS-------TLLRCRRSRQLTRLKVRKAVIRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAKKNLLVKDHTHTFVNKGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKAANGDTYVTGLAMSKATQKKIVKADAYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKVLAAIQSIDNVGVDELSLV 587
Match: A0A6S7M8G7 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1037.71 bits (2682), Expect = 0.000e+0
Identity = 496/577 (85.96%), Postives = 532/577 (92.20%), Query Frame = 0
Query: 8 IYFPATSRPDSAG--------ISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIES-NTPTGAELSLV 575 ++FPATS + + R R L +L+TH+ VVRSDL+++VSDM TNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVN+GGE+GELDFRFPVGAPLHGINAFLTTNQL TYDKARNALALALSPVVRALVDPDGAM IRNLDN+SFSEWF+SKGGTRKSIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYI +KGGRFHLRWGCREILY+KS++G TY++G+AMSKATQKK VKAD Y+AACDVPGIKRLLPS WREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQ R A GLDNLLY+PDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN EII RV KQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFLAGSYTKQDYIDSMEGATLSGRQASA++CDAGE+L AL+K++ IE+ +T EL+LV Sbjct: 12 LWFPATSTAGTRNSFPNTDTFLRCRRSRQLTRLKTHK-SVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNRGGELGELDFRFPVGAPLHGINAFLTTNQLNTYDKARNALALALSPVVRALVDPDGAMTQIRNLDNVSFSEWFMSKGGTRKSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYDKSANGDTYVTGLAMSKATQKKTVKADVYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQSRKATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVEKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFVCDAGEELAALRKQLAAIEAMDTIAADELTLV 587
Match: Q9FV46 (Zeta-carotene desaturase, chloroplastic/chromoplastic (1.3.5.6) (9,9'-di-cis-zeta-carotene desaturase) (Carotene 7,8-desaturase) (Precursor))
HSP 1 Score: 1036.94 bits (2680), Expect = 0.000e+0
Identity = 496/575 (86.26%), Postives = 532/575 (92.52%), Query Frame = 0
Query: 10 FPATS--------RPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGA-ELSLV 575 FPATS R + R R L +L+ R VVRSDL+++VSDM TNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDK+GNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVN+GGE+GELDFRFPVGAPLHGINAFLTTNQLKTYDKARNA+ALALSPVVRALVDPDGAM IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYI +KGGRFHLRWGCREILYEKS++G+TY++G+AMSKATQK++VKAD Y+AACDVPGIKRLLPS WREWEFFDNIYKLVGVPVVTVQLRYNGWVTE+QD+ERSRQLR AAGLDNLLY+PDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN EII RV+KQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGE+L AL+K++ I+S G E+SLV Sbjct: 14 FPATSAAGARTSFRTTDTFLRYRRSRQLTRLKV-RKAVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNRGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKSANGETYVTGLAMSKATQKQIVKADVYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDVERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQSIDSIGVDEMSLV 587
Match: Q8RVY5 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1036.56 bits (2679), Expect = 0.000e+0
Identity = 500/577 (86.66%), Postives = 532/577 (92.20%), Query Frame = 0
Query: 2 AAATSSIYFPATSRPDSAGISLSRCRPLAQLRTHRV--MVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESNTPTGA-ELSLV 575 AA T S + TS +L RCR QL +V V+RSDL+++VSDM TNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELL+QGHEVDIYESR FIGGKVGSFVDK+GNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGE+GELDFRFPVGAPLHGINAFLTTN LKTYDKARNA+ALALSPVVRALVDPDGAM IRNLDNISFSEWF+SKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYI +KGGRFHLRWGCREILYEKS++G TY++G+AMSKATQKK+VKADAY+AACDVPGIKRLLPS WREWEFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLERSRQLR AAGLDNLLY+PDADFSCFADLALASPEDYY+EGQGSLLQCVLTPGDPYMPLPN EII RV+KQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFLAGSYTKQDYIDSMEGATLSGRQASA+ICDAGE+L AL+K + I+S G ELSLV Sbjct: 18 AAGTRSSFHTTTS-------TLLRCRRSRQLTRLKVRKAVIRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLNQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGELGELDFRFPVGAPLHGINAFLTTNHLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYIIEKGGRFHLRWGCREILYEKSANGDTYVTGLAMSKATQKKIVKADAYIAACDVPGIKRLLPSNWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKVLAAIQSIDNVGVDELSLV 587
Match: A0A5B6ZTU2 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1031.94 bits (2667), Expect = 0.000e+0
Identity = 499/584 (85.45%), Postives = 534/584 (91.44%), Query Frame = 0
Query: 4 ATSSIYFPATS-------RPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKIGVIESN-----TPTGAELSLV 575 A+SS FPATS R D+ LS RP+ QL+ R VR+ L+ N+SDMS NAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRL+KKVGA+KNLLVK+H+HTFVNKGGEIGELDFRFP+GAPLHGI AFL+TNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLD+ISFS+WFLSKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPI+ YIT KGGRFHLRWGCREILY+KS+DG TY++GIAMSKATQKK+VKADAYVAACDVPGIKRL+P QWREWEFFDNIYKLVGVPVVTVQLRYNGWVTE+QDLERSRQLR A GLDNLLY+PDADFSCFADLAL SPEDYYLEGQGSLLQCVLTPGDPYMPLPN II+RV KQV ALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFL+GSYTKQDYIDSMEGATLSGRQASA+ICDAGE+LVAL+K++ I+S T T ELSLV Sbjct: 2 ASSSFCFPATSAGTRTTFRTDTTRFFLSGRRPVTQLKAQRSDDVRTSLDTNISDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKEHSHTFVNKGGEIGELDFRFPIGAPLHGIQAFLSTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDSISFSDWFLSKGGTRMSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIKKYITDKGGRFHLRWGCREILYDKSADGDTYVTGIAMSKATQKKIVKADAYVAACDVPGIKRLVPPQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLRQAVGLDNLLYTPDADFSCFADLALTSPEDYYLEGQGSLLQCVLTPGDPYMPLPNEAIIKRVAKQVYALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQASAFICDAGEELVALRKQLAAIDSKGLAEATHTTDELSLV 585
Match: A0A0B4SWS7 (Zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008} (1.3.5.6 {ECO:0000256|RuleBase:RU362008}) (9,9'-di-cis-zeta-carotene desaturase {ECO:0000256|RuleBase:RU362008}))
HSP 1 Score: 1031.17 bits (2665), Expect = 0.000e+0
Identity = 493/564 (87.41%), Postives = 525/564 (93.09%), Query Frame = 0
Query: 4 ATSSIYFPATS--------RPDSAGISLSRCRPLAQLRTHRVMVVRSDLEKNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNALALALSPVVRALVDPDGAMRDIRNLDNISFSEWFLSKGGTRKSIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRDYITQKGGRFHLRWGCREILYEKSSDGQTYISGIAMSKATQKKVVKADAYVAACDVPGIKRLLPSQWREWEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLERSRQLRHAAGLDNLLYSPDADFSCFADLALASPEDYYLEGQGSLLQCVLTPGDPYMPLPNGEIIERVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQRTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEDLVALQKKI 559 A+SS+ FP TS RPD +G LS RP Q ++ R VR L+ NVSDMS NAPKGLFP EPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRL+KKVGA+KNLLVKDHTHTFVNKGGEIGELDFRFP+GAPLHGI AFL+TNQLK YDKARNALALALSPVVRALVDPDGAMRDIRNLD+ISFS+WFLSKGGTR SIQRMWDPVAYALGFIDCDN+SARCMLTIF LFATKTEASLLRMLKGSPD+YLSGPI+ YIT KGGRFHLRWGCREILY++S+DG+TY++GIAMSKATQKK+VKADAYVAACDVPGIKRL+P WREWEFFDNIY+LVGVPVVTVQLRYNGWVTE+QDLERSRQLR AAGLDNLLY+PDADFSCFADLAL+SPEDYYLEGQGSLLQCVLTPGDPYMPLPN EII+RVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQ+TPV+NFFLAGSYTKQDYIDSMEGATLSGRQASAYICD GE+LVAL+KKI Sbjct: 2 ASSSLCFPTTSAAGARTTLRPDVSGFLLSGHRPRTQFKS-RSFDVRCSLDSNVSDMSVNAPKGLFPSEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFVNKGGEIGELDFRFPIGAPLHGIRAFLSTNQLKPYDKARNALALALSPVVRALVDPDGAMRDIRNLDSISFSDWFLSKGGTRASIQRMWDPVAYALGFIDCDNISARCMLTIFGLFATKTEASLLRMLKGSPDIYLSGPIKKYITDKGGRFHLRWGCREILYDRSTDGETYVTGIAMSKATQKKIVKADAYVAACDVPGIKRLVPPTWREWEFFDNIYELVGVPVVTVQLRYNGWVTELQDLERSRQLRQAAGLDNLLYTPDADFSCFADLALSSPEDYYLEGQGSLLQCVLTPGDPYMPLPNDEIIKRVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICDGGEELVALRKKI 564
Match Name | Stats | Description |
---|---|---|
Q2VEX8 | E-Value: 0.000e+0, PID: 100.00 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
Q2VER6 | E-Value: 0.000e+0, PID: 90.96 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
Q8H0Q6 | E-Value: 0.000e+0, PID: 87.00 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
A0A2R6RBF8 | E-Value: 0.000e+0, PID: 87.05 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
U6BQI7 | E-Value: 0.000e+0, PID: 86.66 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
A0A6S7M8G7 | E-Value: 0.000e+0, PID: 85.96 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
Q9FV46 | E-Value: 0.000e+0, PID: 86.26 | Zeta-carotene desaturase, chloroplastic/chromoplas... [more] |
Q8RVY5 | E-Value: 0.000e+0, PID: 86.66 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
A0A5B6ZTU2 | E-Value: 0.000e+0, PID: 85.45 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
A0A0B4SWS7 | E-Value: 0.000e+0, PID: 87.41 | Zeta-carotene desaturase {ECO:0000256|RuleBase:RU3... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |