Resource Type:
Polypeptide
Name:
DCAR_024551
Identifier:
DCAR_024551.mRNA-protein
Sequence:
MGCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRG
GFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHV
YKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYC
ADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEY
LHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRA
RPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGD
VVTALTYLASQAYDPNASVSQSSRVGSSTPRSRDRRSTHDAVDSPGHNGS
PTTHKNSPDFRKRDLMTNSRNGETSGGSGRRWAVDDLEYTESQRDSPVSA
GRTREPRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE*
Sequence Length:
445
Sequence Checksum:
6ff2c38dea3a2446a27257aeb4fe2a87
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_024551, derives from mRNA, DCAR_024551. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z5P4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 676.396 bits (1744), Expect = 0.000e+0
Identity = 360/512 (70.31%), Postives = 388/512 (75.78%), Query Frame = 0
Match: A0A5B6Z5P4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 676.396 bits (1744), Expect = 0.000e+0
Identity = 360/512 (70.31%), Postives = 388/512 (75.78%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP------GHNGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTREP-RNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS +G NG +EV KKDS KEGSA QS+ ++RV SD +KSR G D KKE +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEF+PLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ +QS+RVG STPR++ DRR+ + +DSP G +GSP+THKNSPDFRKRD L T + G +TSGGSGR+W VDDLE ES+RDSPVS GR RE RNRDLDRERAVAEAKVWGEN RE+K+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEG-NGVKEVAKKDSVKEGSAAQSHRVSRVSSDKSKSRSGSDNKKEPAVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFLPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGHYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAATAQSNRVGPSTPRNKDDRRNAANGLDSPDEPGRGGRHGSPSTHKNSPDFRKRDSARELSTGAELGRSQTSGGSGRKWGVDDLERQESERDSPVSTGRARETHRNRDLDRERAVAEAKVWGENWRERKRANAMGSFDGTNE 513
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059B5Z1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 355/507 (70.02%), Postives = 387/507 (76.33%), Query Frame = 0
Match: A0A059B5Z1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 355/507 (70.02%), Postives = 387/507 (76.33%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP-GHNGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS+ + +G +EV KKDS KE S S+H++RV SD TKSR G DPKKE+P+PKD PT HIAAQTFTFRELAAATKNF PE LLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EG+HPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ +QS+RVG STPR + DRR T + +DSP G+ GSP+TH+NSPDFRKRD L T + G ET GGSGR+W +DD E +S RDSP SAGR RE PRNRDLDRERAVAEAKVWGEN RE+K+ GA+ SFD+TNE
Sbjct: 3 GCFPCFGSSKGNDGSGVKEVSKKDSAKEASTAHSHHVSRVSSDKTKSRNGSDPKKEVPMPKDGPTAHIAAQTFTFRELAAATKNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNSRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSASAQSNRVGPSTPRMKDDRRGTAEGLDSPDGYRGSPSTHRNSPDFRKRDQVRQLTTGAELGRSETGGGSGRKWGLDDFERVDSHRDSPGSAGRGRETPRNRDLDRERAVAEAKVWGENWRERKRAGAVGSFDSTNE 509
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RCT3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0
Identity = 359/511 (70.25%), Postives = 384/511 (75.15%), Query Frame = 0
Match: A0A5N6RCT3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0
Identity = 359/511 (70.25%), Postives = 384/511 (75.15%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRD-RRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNG-----ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS + ++G +EV KKDS KEGSA QS+H+ RV SD +KSR G DPKKE +PKD PT HIAAQTFTFRELA ATKNF PECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLP +K+PLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL E YHPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ SQ++RVG STPRSRD RRS D +DSP G NGSP+ +KNSPDFRKRD +S + ET GGSGR+ VD+LE ESQRDSPVS GR RE PRNRDLDRERAVAEAKVWGEN REKK+ M SFDATNE
Sbjct: 3 GCFPCFGSSNKE-ESGVKEVAKKDSVKEGSAGQSHHVIRVSSDKSKSRSGSDPKKEPAIPKDGPTAHIAAQTFTFRELATATKNFRPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPQDKKPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEVYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSAASQNNRVGPSTPRSRDERRSLGDGLDSPDQPGRGGWNGSPSAYKNSPDFRKRDARESSSSAALARIETGGGSGRKLGVDELERHESQRDSPVSTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANVMGSFDATNE 512
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AC98 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 358/512 (69.92%), Postives = 384/512 (75.00%), Query Frame = 0
Match: A0A5J5AC98 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 358/512 (69.92%), Postives = 384/512 (75.00%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSPGH------NGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCF SS +G NG +EV KKDS KEGS QS+H +RV SD +KSR G DPKKE +PK T HIAAQTFTFRELAAAT+NF PECLLGEGGFG VYKGRLESTGQVVAVKQLDR+GLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHD+ANPPVIYRDLKSSNILL +GYHPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ +QSSRVG STPR++ DRR+ + +DSPG +GSP+THKNSPDFRKRD L T + G ETSGGSGR+W VD LE ESQRDSPVS GRTRE PRNRDLDRERAVAEAKVWGEN R KK+ A SFD TNE
Sbjct: 3 GCFPCFRSSNKEG-NGVKEVAKKDSVKEGSVAQSHHGSRVSSDKSKSRSGSDPKKEPAVPKVGSTAHIAAQTFTFRELAAATRNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRDGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDRANPPVIYRDLKSSNILLDDGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGHYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAATTQSSRVGPSTPRNKDDRRTMANGMDSPGEPGSSGRHGSPSTHKNSPDFRKRDSERKLSTGAELGRSETSGGSGRKWGVDGLECQESQRDSPVSTGRTRETPRNRDLDRERAVAEAKVWGENWRGKKRANATGSFDGTNE 513
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RHH8 ((Serine/threonine-protein kinase PBS1 {ECO:0000313|EMBL:EXB74832.1}))
HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 358/508 (70.47%), Postives = 382/508 (75.20%), Query Frame = 0
Match: W9RHH8 ((Serine/threonine-protein kinase PBS1 {ECO:0000313|EMBL:EXB74832.1}))
HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 358/508 (70.47%), Postives = 382/508 (75.20%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSPG--HNGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS +DG +G +EV KKDS KEGS QS+H+TRV S+ +KSR G DPKKE +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ S+RVG STPRSR DRRS + +DSP NGSP+TH+NSPDFRKRDL+ G ET GGSGR+W +DDL+ +SQRDSP SAGR RE PR RDLDRER VAEAKVWGEN KK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNNDG-SGVKEVNKKDSVKEGSTAQSHHVTRVSSEKSKSRSGSDPKKESTIPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAPPYSNRVGPSTPRSRDDRRSMAEGLDSPDGRRNGSPSTHRNSPDFRKRDLVRELNTGGELGRIETGGGSGRKWGLDDLDRPDSQRDSPASAGRARETPRTRDLDREREVAEAKVWGENW--KKRATAMGSFDGTNE 507
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3N7FK27 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 355/514 (69.07%), Postives = 381/514 (74.12%), Query Frame = 0
Match: A0A3N7FK27 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 355/514 (69.07%), Postives = 381/514 (74.12%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGE---QEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRAR------------------------------PLFKDRRKFPKMADP-------------------------LLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNG-----ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS +G +G +E+ KDS KEGSA QS+H+ RV SD +KSR G DPKKE +PKD PT +IAAQ FTFRELAAATKNF PECLLGEGGFG VYKGR+ESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTR L R+ DP LLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA V+QS+RVG STPR+R DRR D +DSP G NGSP+T+KNSPD+RKRD + G +GGSGR+W +DD + +SQRDSPVS R RE PRNRDLDRERAVAEAKVWGEN REK++ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEGSSGVGLVKELNNKDSLKEGSAGQSHHVGRVSSDKSKSRSGSDPKKEQSIPKDGPTANIAAQIFTFRELAAATKNFRPECLLGEGGFGRVYKGRIESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPGKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRDPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNA-VNQSNRVGPSTPRNRDDRRGMADGLDSPDEHGRGGRNGSPSTYKNSPDYRKRDHVREFSTGAELGRSETGGSGRKWGLDDSDQQDSQRDSPVSTSRARETPRNRDLDRERAVAEAKVWGENWREKRRANAMGSFDGTNE 515
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5ERU2 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PON88269.1}))
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 356/513 (69.40%), Postives = 377/513 (73.49%), Query Frame = 0
Match: A0A2P5ERU2 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PON88269.1}))
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 356/513 (69.40%), Postives = 377/513 (73.49%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLF-----------------------------------------KDRRKFPKMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSPGH------NGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAM-DSFDATNE 444
GCFPCFGSS +G G +EV KKDS KEGS QS+H+T V SD +KSR G DPKKE +PKD PT HIAAQTF FRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHH NLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTR + + A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ S+RVG STP +R DRRS + +DSP NGSP+TH+NSPDFRKRDL G ET GGSGR+W +DDLE +SQRDSP SAGR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEGSGGVKEVTKKDSVKEGSTAQSHHVTGVSSDKSKSRSGSDPKKEPVIPKDGPTAHIAAQTFAFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAQGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAA---SNRVGPSTPWNRDDRRSMGEGLDSPDEHGRGRRNGSPSTHRNSPDFRKRDLARELSTGAELSRIETGGGSGRKWGLDDLERPDSQRDSPASAGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGGSFDGTNE 512
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4B2U1 ((serine/threonine-protein kinase PBL27 {ECO:0000313|RefSeq:XP_015892703.1}))
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 357/512 (69.73%), Postives = 383/512 (74.80%), Query Frame = 0
Match: A0A6P4B2U1 ((serine/threonine-protein kinase PBL27 {ECO:0000313|RefSeq:XP_015892703.1}))
HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 357/512 (69.73%), Postives = 383/512 (74.80%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP------GHNGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCF SS+ +G + ++ V KDS KEGSA QS+H+TRV SD +KSR G D KKE P+PKD PT HIAAQTFTFRELAAATKNF PE LLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP++EPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA S S+RVG STPR+R DRR+ D +DSP G +GSP TH+NSPDFR+RD L T + G ET GGSGR+W VD+ E ESQRDSP+S GR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFRSSKKEGSDVKE--VTKDSVKEGSATQSHHVTRVSSDKSKSRSGSDSKKEPPIPKDGPTAHIAAQTFTFRELAAATKNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDREPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNNRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAVSSHSNRVGPSTPRNRDDRRNMADGLDSPDEHGRGGRHGSPATHRNSPDFRRRDPARELSTGAELGRIETGGGSGRKWGVDESEQHESQRDSPLSTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDGTNE 512
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5W054 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 354/506 (69.96%), Postives = 377/506 (74.51%), Query Frame = 0
Match: A0A6J5W054 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 354/506 (69.96%), Postives = 377/506 (74.51%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLF----------------KDRRKFPKMADPLLQGR---------------------------------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRD-RRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNGETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS +G +G +EV KKDS KEGSA QS+H+TRV SD KSR G D KKE +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHD P +KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EG+HPKLSDFGLAKLGPVGDKTHVSTR + D F + L+ GR YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ S+RVG STPR +D RR+ D +DSP G +GSP+THKNSPD+R+RD ET GSGRRW +D LE ESQRDSPVSAGR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEG-SGVKEVTKKDSVKEGSAAQSHHVTRVSSDK-KSRNGSDHKKEPAIPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDFPSDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSASGHSNRVGPSTPRHKDERRNMADGLDSPDEPGRGGRHGSPSTHKNSPDYRRRDTGVELGRIETGTGSGRRWGLDGLERQESQRDSPVSAGRARENPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDGTNE 506
BLAST of DCAR_024551 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AU58 ((serine/threonine-protein kinase PBL27 {ECO:0000313|RefSeq:XP_021290717.1}))
HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 355/512 (69.34%), Postives = 384/512 (75.00%), Query Frame = 0
Match: A0A6J1AU58 ((serine/threonine-protein kinase PBL27 {ECO:0000313|RefSeq:XP_021290717.1}))
HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 355/512 (69.34%), Postives = 384/512 (75.00%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNG---EQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRARPLFK-----------------------------------DRRKFP------KMADPLLQGR--------------YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP---GHNGSPTTHKNSPDFRK----RDLMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 444
GCFPCFGSS +G NG +E+ KKDS KEGS QS+H+ RV SD +KSR G DPKKE +PKD T +IAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTR + D + P A PL + R YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA +QS+RVG STPR + DRRS D +DSP G +GSP+TH+NSPD+RK R++ T + G ET GGSGR+W +DD E ESQRDSP++A R RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TN+
Sbjct: 3 GCFPCFGSSNKEGSNGGGTVKELSKKDSTKEGSVGQSHHVNRVSSDKSKSRSGSDPKKEPTVPKDGATENIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAPSNQSNRVGPSTPRLKDDRRSMGDGLDSPDERGQHGSPSTHRNSPDYRKRNHAREMSTGTELGRSETGGGSGRKWGLDDSERQESQRDSPLNAVRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDGTND 514
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6Z5P4 | E-Value: 0.000e+0, PID: 70.31 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A059B5Z1 | E-Value: 0.000e+0, PID: 70.02 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5N6RCT3 | E-Value: 0.000e+0, PID: 70.25 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5J5AC98 | E-Value: 0.000e+0, PID: 69.92 | Protein kinase domain-containing protein {ECO:0000... [more] |
| W9RHH8 | E-Value: 0.000e+0, PID: 70.47 | (Serine/threonine-protein kinase PBS1 {ECO:0000313... [more] |
| A0A3N7FK27 | E-Value: 0.000e+0, PID: 69.07 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2P5ERU2 | E-Value: 0.000e+0, PID: 69.40 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A6P4B2U1 | E-Value: 0.000e+0, PID: 69.73 | (serine/threonine-protein kinase PBL27 {ECO:000031... [more] |
| A0A6J5W054 | E-Value: 0.000e+0, PID: 69.96 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6J1AU58 | E-Value: 0.000e+0, PID: 69.34 | (serine/threonine-protein kinase PBL27 {ECO:000031... [more] |
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| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |