Resource Type:
Polypeptide
Name:
XM_017369323.1
Identifier:
XM_017369323.1-protein
Sequence:
MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLY
FKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAK
LRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQET
GAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALA
AKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDL
TWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDS
FKGNPAWKDCHHIGIVLSGGNVDLGTLWDSLC
Sequence Length:
332
Sequence Checksum:
a5da467c4d4613994570f87e974fe627
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017369323.1, derives from mRNA, XM_017369323.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835D1I2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8380262.1}))
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 271/331 (81.87%), Postives = 302/331 (91.24%), Query Frame = 0
Match: A0A835D1I2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8380262.1}))
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 271/331 (81.87%), Postives = 302/331 (91.24%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME ++ E Y DI +I+EAQVRI+ FIH TP+LSSE+LNS AGR+L+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP CKVENV+RYGG +I SEAT+QSRE A++VLQ+TGAVL+HP+ND RIISGQGTISLELL+Q P IDTIIVPISGGGLISGV LAAKSINPNIR+FAAEP GANDAAQSK+AGRIITLPETNTIADGLRA LGDLTWPIVRDLVDDII VEDKEI++AMRLCYEILKVAVEPSGAIGLAAVLSDSF+ NPAWKDC++IGI+LSGGNVDLG LW+SL
Sbjct: 147 METKSQLDSEKYAADILSIREAQVRINSFIHRTPILSSESLNSIAGRRLFFKCECFQKGGAFKFRGACNAIFSLKDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPKCKVENVKRYGGQVIWSEATIQSRESVATKVLQQTGAVLVHPFNDGRIISGQGTISLELLEQVPQIDTIIVPISGGGLISGVTLAAKSINPNIRVFAAEPSGANDAAQSKEAGRIITLPETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDKEIVEAMRLCYEILKVAVEPSGAIGLAAVLSDSFRKNPAWKDCNNIGIILSGGNVDLGVLWESL 477
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YG83 ((Putative serine racemase isoform X1 {ECO:0000313|EMBL:MPA30774.1}) (5.1.1.18 {ECO:0000313|EMBL:MPA30774.1}))
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 277/331 (83.69%), Postives = 303/331 (91.54%), Query Frame = 0
Match: A0A5B6YG83 ((Putative serine racemase isoform X1 {ECO:0000313|EMBL:MPA30774.1}) (5.1.1.18 {ECO:0000313|EMBL:MPA30774.1}))
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 277/331 (83.69%), Postives = 303/331 (91.54%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME ++ GE Y DIS+I+EAQ RI+ FIH+TPVLSSETLNS AGRKL+FKCECFQKGGAFKFRGA NA+ SLD+++AAKGVVTHSSGNHAAAL+LAAKLRGIPAYI+IPKNAP CKVENV RYGG +I SEATMQSRE+ A++VLQETGAVL+HPYND RIISGQGTISLELL+QAP IDTIIVPISGGGLISGVALAAKSINP IR+ AAEPRGANDAAQSK AGRIITLPETNTIADGLRA LGDLTWP+VRDLVDDII VEDKEII+AM+LCYEILKVAVEPSGAIGLAAVLSDSF+ NP+WKDC HIGI+LSGGNVDLG LWDS
Sbjct: 1 METRSQIRGEEYAADISSIREAQARINSFIHSTPVLSSETLNSIAGRKLHFKCECFQKGGAFKFRGACNAIFSLDDERAAKGVVTHSSGNHAAALALAAKLRGIPAYIVIPKNAPKCKVENVMRYGGQVIWSEATMQSREDIATKVLQETGAVLVHPYNDGRIISGQGTISLELLEQAPQIDTIIVPISGGGLISGVALAAKSINPAIRVLAAEPRGANDAAQSKAAGRIITLPETNTIADGLRAFLGDLTWPVVRDLVDDIITVEDKEIIEAMQLCYEILKVAVEPSGAIGLAAVLSDSFRKNPSWKDCGHIGIILSGGNVDLGVLWDSF 331
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200R8U4 ((Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily {ECO:0000313|EMBL:OVA19157.1}))
HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 270/331 (81.57%), Postives = 296/331 (89.43%), Query Frame = 0
Match: A0A200R8U4 ((Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily {ECO:0000313|EMBL:OVA19157.1}))
HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 270/331 (81.57%), Postives = 296/331 (89.43%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
MEV + Y DIS+IKEAQVRI+ FI TPVLSSETLNS AGR+L+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAPNCKVENVRRYGG +I SEATMQSRE A VLQETGAVL+HP+ND RIISGQGTISLELL+Q P IDT+IVPISGGGLISGVALAAKSINP+IR+ AAEPRGANDAAQSK AG+I+TLPETNTIADGLRA LGDLTWPIVRDLVDD+I VEDKEII AM++CYEILKVAVEPSGAIGLAAVLSD+F NPAWKDC++I I+LSGGNVDLG LW+S
Sbjct: 1 MEVKDQLQSGNYAADISSIKEAQVRINSFIQKTPVLSSETLNSIAGRRLFFKCECFQKGGAFKFRGACNAIFSLGDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPNCKVENVRRYGGKVIWSEATMQSRESIAKMVLQETGAVLVHPFNDGRIISGQGTISLELLEQIPQIDTLIVPISGGGLISGVALAAKSINPSIRVLAAEPRGANDAAQSKAAGKIVTLPETNTIADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIGAMKMCYEILKVAVEPSGAIGLAAVLSDTFLKNPAWKDCNNIAIILSGGNVDLGVLWESF 331
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6P735 ((Putative ammonia-lyase, Serine racemase {ECO:0000313|EMBL:PRQ17736.1}) (4.3.1.- {ECO:0000313|EMBL:PRQ17736.1}) (5.1.1.18 {ECO:0000313|EMBL:PRQ17736.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 271/331 (81.87%), Postives = 294/331 (88.82%), Query Frame = 0
Match: A0A2P6P735 ((Putative ammonia-lyase, Serine racemase {ECO:0000313|EMBL:PRQ17736.1}) (4.3.1.- {ECO:0000313|EMBL:PRQ17736.1}) (5.1.1.18 {ECO:0000313|EMBL:PRQ17736.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 271/331 (81.87%), Postives = 294/331 (88.82%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELL-KQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDS 330
ME ++ Y DIS+IKEAQ RI PFIH TPVLSSETLN +GR+L+FKCECFQKGGAFKFRGA NAV SLD+DQAAKGVVTHSSGNHAAALS AAKLRGIPAYI+IPKNAP CKVENV RYGG +I SE TMQSRE TA++VLQETGAVLLHPYND+RIISGQGTISLELL +Q P +D I+VPISGGGLISGVALAAKSINP IR+FAAEP GANDAAQSK+AGRIITL ETNT+ADGLRA LGDLTWPIVRDLVD I+ VEDKEII AM+LCYEILKVAVEPSGAIGLAAVLSDSFK NPAWKDC +IGI+LSGGNVDLG +WDS
Sbjct: 30 MEAESQMREIKYAADISSIKEAQARIKPFIHETPVLSSETLNLLSGRQLFFKCECFQKGGAFKFRGACNAVFSLDDDQAAKGVVTHSSGNHAAALSFAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEPTMQSRESTAAKVLQETGAVLLHPYNDRRIISGQGTISLELLEQQVPHLDAIVVPISGGGLISGVALAAKSINPAIRVFAAEPEGANDAAQSKEAGRIITLSETNTVADGLRAFLGDLTWPIVRDLVDGIVTVEDKEIINAMKLCYEILKVAVEPSGAIGLAAVLSDSFKNNPAWKDCTNIGIILSGGNVDLGIIWDS 360
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TW10 (PALP domain-containing protein {ECO:0000259|Pfam:PF00291})
HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 278/331 (83.99%), Postives = 304/331 (91.84%), Query Frame = 0
Match: D7TW10 (PALP domain-containing protein {ECO:0000259|Pfam:PF00291})
HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 278/331 (83.99%), Postives = 304/331 (91.84%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME E + Y DIS+I+EAQVRI+ FIH TPVL+SETLNS AGR L+FKCECFQKGGAFKFRGA NA+ SLD++QAAKGVVTHSSGNHAAALSLAAKLRGIPAYI+IP+NAP CKVENV RYGG +I S ATMQSRE+ A+RVLQETGAVLLHPYND RIISGQGT+SLELL+QAP IDTI+VPISGGGLISGVALAAKSINP+IR+FAAEP+GANDAAQSK AGRIITLPETNTIADGLRASLGDLTWP+VRDLVDDIIVVEDKEII+AM+LCYEILKVAVEPSGAIGLAAVLSDSFK NPAWK+C ++GIVLSGGNVDLG LWDSL
Sbjct: 1 MEAENEIRSKRYAADISSIREAQVRINSFIHKTPVLTSETLNSLAGRGLFFKCECFQKGGAFKFRGACNAIFSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPRCKVENVIRYGGQVIWSRATMQSREDIATRVLQETGAVLLHPYNDGRIISGQGTVSLELLEQAPQIDTIMVPISGGGLISGVALAAKSINPSIRVFAAEPKGANDAAQSKNAGRIITLPETNTIADGLRASLGDLTWPVVRDLVDDIIVVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDSFKKNPAWKNCRNVGIVLSGGNVDLGVLWDSL 331
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438BZK8 ((Serine racemase {ECO:0000313|EMBL:RVW16383.1}))
HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 276/331 (83.38%), Postives = 303/331 (91.54%), Query Frame = 0
Match: A0A438BZK8 ((Serine racemase {ECO:0000313|EMBL:RVW16383.1}))
HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 276/331 (83.38%), Postives = 303/331 (91.54%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME E + Y DIS+I+EAQVRI+ IH TPVL+SETLNS AGR L+FKCECFQKGGAFKFRGA NA+ SLD++QAAKGVVTHSSGNHAAALSLAAKLRGIPAYI+IP+NAP CKVENV RYGG +I S ATMQSRE+ A+RVLQETGAVLLHPYND RIISGQGT+SLELL+QAP IDTI+VPISGGGLISGVALAAKSINP+IR+FAAEP+GANDAAQSK AGRIITLPETNTIADGLRASLGDLTWP+VRDLVDDIIVVEDKEII+AM+LC+EILKVAVEPSGAIGLAAVLSDSFK NPAWK+C ++GIVLSGGNVDLG LWDSL
Sbjct: 1 MEAENEIRSKRYAADISSIREAQVRINSLIHKTPVLTSETLNSLAGRGLFFKCECFQKGGAFKFRGACNAIFSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPRCKVENVIRYGGQVIWSRATMQSREDIATRVLQETGAVLLHPYNDGRIISGQGTVSLELLEQAPQIDTIMVPISGGGLISGVALAAKSINPSIRVFAAEPKGANDAAQSKNAGRIITLPETNTIADGLRASLGDLTWPVVRDLVDDIIVVEDKEIIEAMKLCFEILKVAVEPSGAIGLAAVLSDSFKKNPAWKNCRNVGIVLSGGNVDLGVLWDSL 331
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZMT7 ((serine racemase {ECO:0000313|RefSeq:XP_010255424.1, ECO:0000313|RefSeq:XP_010255425.1}))
HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 262/331 (79.15%), Postives = 294/331 (88.82%), Query Frame = 0
Match: A0A1U7ZMT7 ((serine racemase {ECO:0000313|RefSeq:XP_010255424.1, ECO:0000313|RefSeq:XP_010255425.1}))
HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 262/331 (79.15%), Postives = 294/331 (88.82%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME + + E Y DIS+IK+A RISPFIH TPVLSSE+LN AG+KL+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP CKVENVRRYGG +I SEATM SRE A+++LQETGA ++HP+ND RIISGQGTISLELL+Q P IDTI+VPISGGGLISGVALAAKSINP+IR+ AAEPRGA+DAA+SK AG+I+ L ETNTIADGLRA LGDLTWPIVRDLVDDII VEDKEII+AMR+CYEILKVAVEPSGAIGLAAVLSD F+ NPAW +C HIGI+LSGGNVDLG LW+SL
Sbjct: 1 MEAKHQLHSENYAADISSIKDAHGRISPFIHRTPVLSSESLNYIAGKKLFFKCECFQKGGAFKFRGACNAIFSLMDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPKCKVENVRRYGGQVIWSEATMPSRESVAAKILQETGAAMVHPFNDGRIISGQGTISLELLEQVPQIDTIVVPISGGGLISGVALAAKSINPSIRVLAAEPRGADDAARSKAAGKIVKLSETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDKEIIEAMRMCYEILKVAVEPSGAIGLAAVLSDGFQKNPAWNECKHIGIILSGGNVDLGVLWESL 331
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A822XGT9 ((Uncharacterized protein {ECO:0000313|EMBL:DAD18883.1}))
HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 262/331 (79.15%), Postives = 294/331 (88.82%), Query Frame = 0
Match: A0A822XGT9 ((Uncharacterized protein {ECO:0000313|EMBL:DAD18883.1}))
HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 262/331 (79.15%), Postives = 294/331 (88.82%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSL 331
ME + + E Y DIS+IK+A RISPFIH TPVLSSE+LN AG+KL+FKCECFQKGGAFKFRGA NA+ SL +DQAAKGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP CKVENVRRYGG +I SEATM SRE A+++LQETGA ++HP+ND RIISGQGTISLELL+Q P IDTI+VPISGGGLISGVALAAKSINP+IR+ AAEPRGA+DAA+SK AG+I+ L ETNTIADGLRA LGDLTWPIVRDLVDDII VEDKEII+AMR+CYEILKVAVEPSGAIGLAAVLSD F+ NPAW +C HIGI+LSGGNVDLG LW+SL
Sbjct: 31 MEAKHQLHSENYAADISSIKDAHGRISPFIHRTPVLSSESLNYIAGKKLFFKCECFQKGGAFKFRGACNAIFSLMDDQAAKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPKCKVENVRRYGGQVIWSEATMPSRESVAAKILQETGAAMVHPFNDGRIISGQGTISLELLEQVPQIDTIVVPISGGGLISGVALAAKSINPSIRVLAAEPRGADDAARSKAAGKIVKLSETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDKEIIEAMRMCYEILKVAVEPSGAIGLAAVLSDGFQKNPAWNECKHIGIILSGGNVDLGVLWESL 361
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TZK5 ((serine racemase-like {ECO:0000313|RefSeq:XP_027083249.1, ECO:0000313|RefSeq:XP_027083251.1}))
HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 259/332 (78.01%), Postives = 296/332 (89.16%), Query Frame = 0
Match: A0A6P6TZK5 ((serine racemase-like {ECO:0000313|RefSeq:XP_027083249.1, ECO:0000313|RefSeq:XP_027083251.1}))
HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 259/332 (78.01%), Postives = 296/332 (89.16%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDSLC 332
ME ++ + Y DIS+I+EAQ+RI+ + H TPVLSSETLNS GRKLYFKCECFQKGGAFKFRGA NA+LSLD+ QAAKGVVTHSSGNHAAALSLAAK+RGIPAY+++PKNAP CKVEN+RRYGG II SEA ++SREETA++VLQETGAV++HPYND RIISGQGTISLELL+Q IDTIIVP+SGGGLISGVA+AAKS+ P+IRI AAEP+GA+DAAQSK AG I+ LPET TIADGLRASLG+ TWP+VRDLVDDIIVVED EI++AMR CYEILKVAVEPSGAIGLAAVLSDSF+ NPAWKD HIGI++SGGN+DLG LWDSLC
Sbjct: 1 MEADSLTSTKKYAADISSIREAQLRINSYAHKTPVLSSETLNSFCGRKLYFKCECFQKGGAFKFRGACNAILSLDDSQAAKGVVTHSSGNHAAALSLAAKIRGIPAYVVVPKNAPKCKVENIRRYGGQIIWSEAAIESREETATKVLQETGAVMIHPYNDGRIISGQGTISLELLEQVLEIDTIIVPVSGGGLISGVAIAAKSLKPSIRILAAEPKGADDAAQSKAAGEIVKLPETKTIADGLRASLGEFTWPVVRDLVDDIIVVEDSEIVEAMRHCYEILKVAVEPSGAIGLAAVLSDSFRNNPAWKDSEHIGIIVSGGNLDLGILWDSLC 332
BLAST of XM_017369323.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G5CSB7 (PALP domain-containing protein {ECO:0000259|Pfam:PF00291})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 261/330 (79.09%), Postives = 295/330 (89.39%), Query Frame = 0
Match: A0A2G5CSB7 (PALP domain-containing protein {ECO:0000259|Pfam:PF00291})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 261/330 (79.09%), Postives = 295/330 (89.39%), Query Frame = 0
Query: 1 MEVNTERYGEIYGVDISAIKEAQVRISPFIHTTPVLSSETLNSTAGRKLYFKCECFQKGGAFKFRGASNAVLSLDNDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIIIPKNAPNCKVENVRRYGGHIIRSEATMQSREETASRVLQETGAVLLHPYNDKRIISGQGTISLELLKQAPLIDTIIVPISGGGLISGVALAAKSINPNIRIFAAEPRGANDAAQSKKAGRIITLPETNTIADGLRASLGDLTWPIVRDLVDDIIVVEDKEIIQAMRLCYEILKVAVEPSGAIGLAAVLSDSFKGNPAWKDCHHIGIVLSGGNVDLGTLWDS 330
ME N Y DIS+IK+A++RI FIH TP++SSE LNS +GRKL+FKCECFQKGGAFKFRGASNA+ SL NDQA KGVVTHSSGNHAAA+SLAAKLRGIPAYI+IPKNAP+CKVENVRRYGG I SEATMQSRE +++V+++TGA+L+HP+ND RIISGQGTISLELL+Q P IDTIIVPISGGGLISGVALAAK+I P+IRI AAEPRGANDAAQSK AGRIITLPETNTIADGLRA LGDLTWPIVRDLVD++IVVEDKEI+QAM++CYEILKVAVEPSGAIGLAAVLS SF+ NPAWKDC +I I++SGGNVDLG LW+S
Sbjct: 1 MENNGHIQSGKYAADISSIKDAKLRIESFIHKTPIMSSEYLNSVSGRKLFFKCECFQKGGAFKFRGASNAIFSLGNDQAVKGVVTHSSGNHAAAVSLAAKLRGIPAYIVIPKNAPDCKVENVRRYGGKIFWSEATMQSRESVSTKVMEDTGAILIHPFNDGRIISGQGTISLELLEQIPQIDTIIVPISGGGLISGVALAAKAIKPSIRILAAEPRGANDAAQSKAAGRIITLPETNTIADGLRAFLGDLTWPIVRDLVDEVIVVEDKEIVQAMKMCYEILKVAVEPSGAIGLAAVLSHSFQQNPAWKDCSNIAIIVSGGNVDLGILWES 330
| Match Name | Stats | Description |
|---|---|---|
| A0A835D1I2 | E-Value: 0.000e+0, PID: 81.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8380... [more] |
| A0A5B6YG83 | E-Value: 0.000e+0, PID: 83.69 | (Putative serine racemase isoform X1 {ECO:0000313|... [more] |
| A0A200R8U4 | E-Value: 0.000e+0, PID: 81.57 | (Tryptophan synthase beta subunit-like PLP-depende... [more] |
| A0A2P6P735 | E-Value: 0.000e+0, PID: 81.87 | (Putative ammonia-lyase, Serine racemase {ECO:0000... [more] |
| D7TW10 | E-Value: 0.000e+0, PID: 83.99 | PALP domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A438BZK8 | E-Value: 0.000e+0, PID: 83.38 | (Serine racemase {ECO:0000313|EMBL:RVW16383.1})[more] |
| A0A1U7ZMT7 | E-Value: 0.000e+0, PID: 79.15 | (serine racemase {ECO:0000313|RefSeq:XP_010255424.... [more] |
| A0A822XGT9 | E-Value: 0.000e+0, PID: 79.15 | (Uncharacterized protein {ECO:0000313|EMBL:DAD1888... [more] |
| A0A6P6TZK5 | E-Value: 0.000e+0, PID: 78.01 | (serine racemase-like {ECO:0000313|RefSeq:XP_02708... [more] |
| A0A2G5CSB7 | E-Value: 0.000e+0, PID: 79.09 | PALP domain-containing protein {ECO:0000259|Pfam:P... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |