XM_017388785.1

Resource Type: 
Polypeptide
Name: 
XM_017388785.1
Identifier: 
XM_017388785.1-protein
Sequence: 
MRWTIVLHVLLMCVIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLC
TGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNN
NFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNH
FMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPI
PSALSDEPSSSFAGNNLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAI
IIISSLLLHRQNRSKKTENNETWIKYNYDQKKEVGLPKHTTDKYKKTEPA
GKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRY
KQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGS
LASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLK
SSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRK
TDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVF
DNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNN
DEDQSSYASDGEAYSSKGMTDDEFTFSVTG
Sequence Length: 
630
Sequence Checksum: 
4ecde7bdab82b3b21d4d3f335a66d633
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017388785.1, derives from mRNA, XM_017388785.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GYC0 ((Leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:GFZ15524.1}))

HSP 1 Score: 765.377 bits (1975), Expect = 0.000e+0
Identity = 408/636 (64.15%), Postives = 483/636 (75.94%), Query Frame = 0
 
Query:    3 WTIVL-HVLLMCVIFGSSD-DSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDL-IANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIKY----NYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 630
            W I+L HV L C +  S D + EA+ LL FK+SLSN  ALSNWNE ++LCTG+  NW GL+CL G+ F L+LE MGL G+I++E+L+KLP LRTVSFMNN F+GP P       +LR L+LS N FSG+IP+DAF GMN +RRVYL NN F GKIPKSLA L +L D  L  N+F G IP+   K+L   N +NN+L GPIP +L +   SSF+GN+ LCG P+  C  SKKK V K+AII+AAAV  ALA III+S +LH +   KK     T   Y    NY Q KE   P H  + YKK+E   KL FV+N+ ERF+LQDLLRASAEVLGSGS GSSYKA LL+GP +VVKR++ MSNVG+ EF+E+M  LG LSHPNLLPLVAFYY KEEKLLI DF +N SLASHLH     NQP L+WPTRLRII+GVA+GL +LYK FP+L LPHGHLKSSNVLLD+ F PLLADY LVP++NKEHA  FM AYKSPE +Q D   T+KTDVW LGILILE+LTGKFPANYL+QGKGGNADLA+WVNSVVREEWTGEVFD  MK  KN+E EMLKLLKIGMCCCEWNV+RRW L  A+ KI+ LKE ++DED SSYAS+GE YSS+ MTD++F+FSV G
Sbjct:   10 WLILLVHVALTCFVVASGDSEEEAKTLLKFKESLSNDIALSNWNESINLCTGNVSNWKGLICLNGAVFRLQLEGMGLRGMINIEALAKLPSLRTVSFMNNAFDGPMPQVKELGGALRGLFLSGNKFSGDIPDDAFTGMNALRRVYLENNEFTGKIPKSLAELPRLADGWLHGNQFEGEIPDFVSKELRTVNLSNNRLRGPIPDSLQNMSLSSFSGNDGLCGKPLDPCK-SKKKDVAKIAIIIAAAVVAALAAIIIASFILHGRRTQKKQLEQSTAKPYKELANYKQNKEYQSPGHQ-ETYKKSESV-KLDFVRNERERFDLQDLLRASAEVLGSGSFGSSYKARLLTGPTMVVKRFRHMSNVGRDEFHEYMIRLGRLSHPNLLPLVAFYYKKEEKLLITDFVKNDSLASHLHGKQNPNQPGLNWPTRLRIIRGVARGLAYLYKEFPSLTLPHGHLKSSNVLLDQNFEPLLADYALVPVINKEHAQQFMAAYKSPEFTQYD-LTTKKTDVWSLGILILEMLTGKFPANYLKQGKGGNADLAAWVNSVVREEWTGEVFDKDMKGRKNSEGEMLKLLKIGMCCCEWNVERRWALTLAVEKIEELKERDSDEDYSSYASEGEMYSSRAMTDEDFSFSVNG 641    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QPD8 ((Pollen receptor-like kinase {ECO:0000313|EMBL:PSS11774.1}))

HSP 1 Score: 764.992 bits (1974), Expect = 0.000e+0
Identity = 404/637 (63.42%), Postives = 475/637 (74.57%), Query Frame = 0
 
Query:    3 WTIVL-HVLLMCVIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLI-ANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIK------YNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 630
            W I+L HV L C +  S D  EAE LL FK+SLS+  ALSNWNE +SLCTG++ +W GL+CL G+ FGL+LE MGL G+I++E+L+KLP LRT+SFMNN F+GP P       +LR L+LS N FSG IP+DAF GM  +RRVYL NN F GKIPKSLA L  L D  L  N+F G IP+   K L   N +NN+L+GPIP +L +   SSF+GNN LCG P+  C   KK       IIVAAAV    AIII   +L  R  R+KK +  ++  K       NY Q KE   P    + YKK+E   KL FV+N+ ERF+LQDLLRASAEVLGSGS GSSYKA LL+GP +VVKR++ MSNVG+ EF+E+MR LG LSHPNLLPLVAFYY K EKLLI DF +NGSLASHLH     NQP LDWPTRLRIIKGVA+GL +LYK FP+  LPHGHLKSSNVLLD+ F PLLADY LVP++NKEHA  FM AYKSPE +Q+D R T+KTDVW LGILILE+LTGKFPANYL+QGKGGNADLA+WVN VVREEWTGEVFD  MK TKN E EMLKLLKIGMCCCEWNV+RRWDL  A+ KI+ LKE ++DED SSYAS+GE YSS+ MTD++F+FSV G
Sbjct:   13 WLILLVHVALACFVVASGDLEEAETLLKFKESLSDDIALSNWNESISLCTGNESHWKGLMCLNGAVFGLQLEGMGLRGMINIEALTKLPNLRTISFMNNAFDGPMPQVKELGGALRGLFLSGNKFSGNIPDDAFTGMKSLRRVYLENNEFTGKIPKSLAKLPILADAGLHGNQFDGEIPDFVSKQLRNVNLSNNRLQGPIPDSLQNMSQSSFSGNNGLCGKPLDPCKSKKKAIPKIAIIIVAAAVVALAAIIIAWCIL--RGRRTKKKQLGQSSAKPNKKELANYKQHKEYQSPGRQ-ETYKKSESV-KLDFVRNERERFDLQDLLRASAEVLGSGSFGSSYKAKLLTGPTMVVKRFRNMSNVGRNEFHEYMRRLGGLSHPNLLPLVAFYYKKGEKLLITDFVKNGSLASHLHGKQNPNQPGLDWPTRLRIIKGVARGLAYLYKEFPSQTLPHGHLKSSNVLLDQNFEPLLADYALVPVINKEHAQQFMAAYKSPEFTQHD-RTTKKTDVWSLGILILEMLTGKFPANYLKQGKGGNADLAAWVNLVVREEWTGEVFDKDMKGTKNGEGEMLKLLKIGMCCCEWNVERRWDLTVAVKKIEELKERDSDEDYSSYASEGEMYSSRAMTDEDFSFSVNG 644    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ADI5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 393/631 (62.28%), Postives = 478/631 (75.75%), Query Frame = 0
 
Query:   10 LLMCVI--FGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLI-ANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAECPPSKKK-SVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTE---NNETWIKYNYDQKKEVG---LPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 630
            +  C+I  +G +D  E E LL F+ SL N  AL+NWN+  SLC G+  NW G++C+   F+GL+LE+MGL GIID+ +LS+L  LRTVSFMNN+F GP P       +LR L+LSNN F+GEIP+DAF GM  + +VYL NN F GK+P SLA L KL++L L+NN+F G++P+ +   L   N  NNK EGPIP++LS+  +S F+GNNLC  P+  C  SKKK S+PK+AII+      ALA I+++S L   + R K ++   ++   I  N  Q K+ G   LP H  +  KK+E  GKL+FV+N  ERF+LQDLLRASAEVL SGS GSSYKA+LLSGPAVVVKR++QMSNVGK EF+EHMR LGSL+HPNLLPLVAFYY KEEKLLI DF ENGSLASHLHS P  +QP LDWPTRL+IIKGVAKGL +L+K    L LPHGHLKSSNVLLD+TF PLLADY L P++NK+HA   MVAYKSPE +Q D R T+KTDVW LGILILELLTGKFPANYL+QGKG NADLA+WVNSVVREEWTGEVFD  MK TKN E EMLKLLKIGMCCCEWNV+ RWD+ EA  KI+ LKE + DE+ SSY S+G+ YSS+ +T+D+F+FSVTG
Sbjct:    1 MFTCIIVTYGFTD-QEVETLLKFRDSLFNTTALNNWNKS-SLCKGNGSNWTGVICVNDDFYGLQLENMGLKGIIDIGTLSELSSLRTVSFMNNHFEGPIPEIKKLGGALRGLFLSNNQFNGEIPDDAFDGMKSLTKVYLANNTFTGKLPTSLARLPKLLELWLENNQFEGQLPDFRSTALRDVNVANNKFEGPIPASLSNMSASFFSGNNLCDKPLDPCKSSKKKRSIPKIAIILVIVGVAALAAIVLASFLFRGRRRPKTSQMGKSSAAKIHKNDVQYKKAGSAPLPDHRENYNKKSE-NGKLYFVRNGRERFDLQDLLRASAEVLESGSFGSSYKALLLSGPAVVVKRFRQMSNVGKEEFHEHMRRLGSLTHPNLLPLVAFYYKKEEKLLITDFIENGSLASHLHSKPSPDQPALDWPTRLKIIKGVAKGLAYLHKELSALTLPHGHLKSSNVLLDDTFEPLLADYALAPVVNKDHAQQIMVAYKSPEFTQRD-RTTKKTDVWSLGILILELLTGKFPANYLKQGKGANADLATWVNSVVREEWTGEVFDKEMKGTKNGEGEMLKLLKIGMCCCEWNVETRWDMWEAFEKIEELKERDADEEYSSYGSEGDVYSSRAVTEDDFSFSVTG 627    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PNE8 ((Pollen receptor-like kinase {ECO:0000313|EMBL:PSR93577.1}))

HSP 1 Score: 762.681 bits (1968), Expect = 0.000e+0
Identity = 399/636 (62.74%), Postives = 475/636 (74.69%), Query Frame = 0
 
Query:    3 WTIVL-HVLLMCVIFGSSD-DSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDL-IANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIKY----NYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 630
            W I+L H  L C +  S D + EA+ LL FK+SLSN  ALSNWNE ++LCTG+  NW GL+C  G+ FGL+LE MGL G+I++E+L+KLP LRTVSFMNN F+GP P       +LR L+LS N FSG+IP+DAF GMN +RRVYL NN F GKIPKSLA L +L    L  N+F G IP+   K+L   N +NN+L GPIP +L +   SSF+GN+ LCG P+  C   KK       II AA VA    III S +L  R+ + K+ E +     Y    NY Q KE  LP H  + YKK+E   KL FV+N+ ERF+LQDLLRASAEVLGSGS GSSYKA LL+GP +VVKR++ MSNVG+ EF+E+M  LG LSHPNLLPLVAFYY KEEKLLI DF +N SLASHLH     NQP L+WPTRLRII+GVA+GL +LYK FP+L LPHGHLKSSNVLLD+ F PLLADY LVP++NKEHA  FM AYKSPE +Q+D R T+KTDVW LGILILE+LTGKFPANYL+QGKGGNADLA+WVNSVVREEWTGEVFD  MK  KN+E EMLKLLKIGMCCCEWNV+RRW L  A+ KI+ LKE ++DED SSYAS+GE YSS+ MTD++F+FSV G
Sbjct:   10 WLILLVHFALTCFVVASGDSEEEAKTLLKFKESLSNDIALSNWNESINLCTGNVSNWKGLMCSNGAVFGLQLEGMGLRGMINMEALAKLPSLRTVSFMNNAFDGPMPQVKELGGALRGLFLSGNKFSGDIPDDAFTGMNALRRVYLENNEFTGKIPKSLAELPRLAAGWLHGNQFEGEIPDFVSKELRTVNLSNNRLRGPIPDSLQNMSLSSFSGNDGLCGKPLDPCKSKKKDIAKIAIIIAAAVVAALATIIIASFILRGRRTQKKQLEQSSA-KPYKELANYKQNKEYQLPGHQ-ETYKKSESV-KLDFVRNERERFDLQDLLRASAEVLGSGSFGSSYKAKLLTGPTMVVKRFRHMSNVGRDEFHEYMIRLGRLSHPNLLPLVAFYYKKEEKLLITDFVKNDSLASHLHGKQNPNQPGLNWPTRLRIIRGVARGLAYLYKEFPSLTLPHGHLKSSNVLLDQNFEPLLADYALVPVINKEHAQQFMAAYKSPEFTQHD-RTTKKTDVWSLGILILEILTGKFPANYLKQGKGGNADLAAWVNSVVREEWTGEVFDKDMKGRKNSEGEMLKLLKIGMCCCEWNVERRWALTVAVEKIEELKERDSDEDYSSYASEGEMYSSRAMTDEDFSFSVNG 641    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6MW01 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 379/631 (60.06%), Postives = 474/631 (75.12%), Query Frame = 0
 
Query:    6 VLHVLLMC--VIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLK-GSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLH----RQNRSKKTENNETWIKYNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVT 629
            ++H+LL+   VI+G  D   A  L+ FK SL+N G L+NW+  V  C G+  NW GL+C K GS FGL+L++MGLSG ID+++L+++  +RT+SF+NN+F G  P N+ K+  LR ++LS N FSG I  DAFKGM+ +R+V LGNN+F+GKIP SL+ L  LVDLQLQ+N+F G IP+ +Q DL  NF NNKL+G IP  L ++  SSFAGN+LCG P++ C  +  K +  + IIVAA+V   LAIII++  +L     R+N++ K +  +   K  Y         +   + YK+T+  GKLHF++ D ERFEL+DLLRASA+VLGSGS GSSYKA+L   P VVVKR+K+MSNVGK EFY HMR LGSLSHPNLLPL+AFYY K+EKLL+ DFAENGSLASHLH   + ++P LDW TRL+IIKGVA+GL+HLY   P L LPHGHLKSSNVLLD+ F PLL+DYGLVP++NKEHA H MVAYKSPE +Q+ H  T+KTDVWCLGILILE+LTGKFPANYL QGKGG  DL +WVNSVVREEWTGEVFD  MK TKN E EMLKLLKIGM CCEW++ RR D+ EA+ KI GLKE  +DE+ SSYAS+G+ YSS+ M DD F+FSVT
Sbjct:   16 LIHILLISSPVIYGQQD--PAAQLIKFKSSLNNTGDLTNWDPNVPPCAGESPNWKGLICNKDGSVFGLQLQNMGLSGTIDMDTLAQITSIRTLSFINNSFEGTLP-NLLKIGPLRGIFLSYNKFSGVIDGDAFKGMSSLRKVELGNNNFVGKIPISLSQLPILVDLQLQDNQFEGEIPDFEQNDLKVNFANNKLDGHIPKGLRNQDPSSFAGNDLCGKPLSNCKKTLNKKL--IIIIVAASVLAVLAIIIMTLFILRTRKTRKNKNIKRQLTKPDRKNTYKTNANEIQMQTKLETYKRTDNGGKLHFLRTDRERFELEDLLRASADVLGSGSFGSSYKAMLADRPPVVVKRFKEMSNVGKEEFYAHMRLLGSLSHPNLLPLLAFYYKKDEKLLVTDFAENGSLASHLHVKRRPDEPGLDWATRLKIIKGVAQGLDHLYNELPRLSLPHGHLKSSNVLLDDEFNPLLSDYGLVPVINKEHAQHLMVAYKSPEFTQHKHT-TKKTDVWCLGILILEMLTGKFPANYLEQGKGGKPDLGTWVNSVVREEWTGEVFDKDMKGTKNGEGEMLKLLKIGMRCCEWDIARRCDMREAVEKIQGLKEREDDEEYSSYASEGDGYSSRAMDDDNFSFSVT 640    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SZ97 ((probable LRR receptor-like serine/threonine-protein kinase At4g31250 {ECO:0000313|RefSeq:XP_011076339.1}))

HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 388/629 (61.69%), Postives = 478/629 (75.99%), Query Frame = 0
 
Query:    3 WTIVLHVLLMCVIFGSSDD--SEAEILLDFKKSLSNAGALSNWNEEVS-LCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGN-NLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIKYNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFS 627
            W I L +L +C I  SS D  + A+ LL FK+SL+N   L NW E V  LC+ +   WNG LC+  SF+GL+LE MGL G +DV+SLS+LP LR++S MNNNF+GPFP N+NK+  LR L+L+NNNFSGEIP+DAF GM  M +V LG+N FMGKIP SL GL +LVDLQLQ+N+F GRIP+  Q DL  NF+NNKLEG IP+ L D+ +SSF+GN NLCG P+  C   +K S  K+AII+AA V +ALA  I+  +   R+ +  K E +      ++ Q +E   P   T  YK +E  GKL+FV+NDT++FEL++LLRASAEVLGSGS GSSYKA+L +G   VV+R++ MSNVGK EFYEHMR LG L+H NLLPL+AFYY KEEKLLI DF ENGSLAS LH     NQP LDWP RLRIIKGVA+GL +LYK  P L LPHGHLKSSN+L+D T+ PLLADY L P++NK+HA  FMVAYKSPES+QND  +TRKTDVW LGILILELLTG+FPANYL+QG+G +ADLASWVNSVVREEWTGEVFD  +   +N E +ML+LLKIGMCCCEWNV++RW   EA+ KI+ LKE ++D+D SSYAS+G+ YSS+ MTDD+F+FS
Sbjct:    8 WFITLLMLSLCAIPASSQDDTAYAKSLLKFKESLTNVTMLDNWREPVQKLCSWNTPVWNGCLCVNDSFWGLKLEGMGLGGKLDVDSLSELP-LRSLSVMNNNFSGPFPSNINKLGKLRGLFLANNNFSGEIPDDAFSGMRAMTKVVLGDNSFMGKIPMSLLGLPRLVDLQLQDNQFNGRIPDFWQADLKVNFSNNKLEGAIPNTLRDQNASSFSGNLNLCGEPLDPC--KRKNSTKKIAIIIAAVVVLALAAFIVLFVFYRRRQKPLKHEKS-----VDHLQTEE---PNKGTVTYKNSE-HGKLYFVRNDTQKFELEELLRASAEVLGSGSFGSSYKAVLFTGQTYVVRRFRNMSNVGKEEFYEHMRRLGRLTHRNLLPLIAFYYRKEEKLLITDFVENGSLASLLHGKRTPNQPLLDWPMRLRIIKGVARGLAYLYKELPMLTLPHGHLKSSNILVDATYEPLLADYALAPVINKDHAKEFMVAYKSPESTQNDM-VTRKTDVWSLGILILELLTGRFPANYLKQGRGPSADLASWVNSVVREEWTGEVFDKDVSLARNGEGQMLRLLKIGMCCCEWNVEKRWGFREAVEKIEELKERDSDDDYSSYASEGDLYSSRAMTDDDFSFS 623    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YW47 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8392766.1}))

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 373/624 (59.78%), Postives = 475/624 (76.12%), Query Frame = 0
 
Query:   13 CVIFGSSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIA-NFTNNKLEGPIPSALSDEPSSSFAGN-NLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLL-HRQNRSKKT-----ENNETWIKYNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSV 628
            CV+  S D S++++L  FK+SL+N  AL NWN   S C+G+KGNW G+LC KG+  GL+LE+MGL G+IDV+SL  LP LRTVSFMNN+F GP P ++ K+ +L++L+LSNNNFSGEIP++AF GM  ++++YL NN F GKIP SL  + +L+ L+L+ N+F G+IP+ +QKDL A N +NN+LEG IP+ LS   +SSF+GN +LCG P+  C  SKK SV  +A++V A V +ALA I    +++ HR+ ++ ++      N +  +  +   + E G P+      KK E  GKL FV++D ERF+LQDLLRASAEVLGSGS GSSYKA+LLSGPA+VVKR++QM+NVG+ EF EHMR LG L HPNLLPLVA+YY KEEKLL++DF ENGSLA HLH      QP LDWPTRL+IIKGVAKGL +LY   P L +PHGHLKSSNVLLDE   PLL DY LVP++N+EHA   M+AYKSPE +Q   R T+KTDVW LGILILE+LTGKFPANYL+QGK G+ DLASWVNSVVREEWTGEVFDN M  TKN + EMLKLLKIG+ CCE +V+RRWDL +AI KI+ L+E ++DE+ SSYAS+GE YSS+  T+D+F+FS+
Sbjct:  108 CVV-ASCDASDSDVLFKFKESLANDTALGNWNASTSPCSGNKGNWVGVLCSKGTVLGLQLENMGLMGLIDVDSLMGLPNLRTVSFMNNSFEGPMP-DIKKLGALKSLFLSNNNFSGEIPDEAFAGMGSLKKIYLANNEFTGKIPLSLVAVPRLLQLRLEGNQFQGKIPDFRQKDLRAFNVSNNELEGKIPAGLSKMDTSSFSGNKDLCGKPLDTCKSSKKPSVLMIAMVVIA-VGVALAAIGAFFIIIRHRRRQTSESGKSPSTNKQNKVVSSEGDQMESGSPEFAGTN-KKAE-NGKLSFVRDDRERFDLQDLLRASAEVLGSGSFGSSYKAVLLSGPAMVVKRFRQMNNVGREEFQEHMRRLGRLRHPNLLPLVAYYYRKEEKLLVSDFVENGSLAGHLHGKHTSAQPGLDWPTRLKIIKGVAKGLAYLYNELPTLIVPHGHLKSSNVLLDEFLEPLLTDYALVPVVNQEHAQELMIAYKSPEYAQYG-RTTKKTDVWSLGILILEMLTGKFPANYLKQGKRGDGDLASWVNSVVREEWTGEVFDNEMGGTKNGQGEMLKLLKIGLDCCERDVERRWDLGDAIEKIEELRERDSDEEYSSYASEGEMYSSRAQTEDDFSFSL 725    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UBC3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 375/614 (61.07%), Postives = 460/614 (74.92%), Query Frame = 0
 
Query:   18 SSDDSEAEILLDFKKSLSNAGALSNWNEEVSLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNN-LCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIKYNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVTG 630
            SS DS A IL+ FK  L+N+ AL NWNE V+ C     NW GL C  G+   L LESMGLSG ID++ L +LP LR +S MNN+F GP P  +NK++SLRALYLS+N FSGE+ +DAF GMN + ++YL NN+F G IP SL  LSKLV L L+NN+F G+IP+ +Q   + N +NN L G IP+AL+    +SFAGN+ LCG P++ C  SKKK++  + I+V  A  IALA++I  +    R +R K T+  +  ++    Q K   + ++   +    +  G+LH V+ND ERF+LQDLLRASAEVLGSG+ GSSYKA+LL GPA+VVKR+++M+NVGK EF EHM  LG LSH NLLPLVAFYY K+EKLLI DF ENGSLASHLH+     QP LDWPTRL+I+KGVA+GL +L+K FP L LPHGHLKSSNVLLD TF PLL DYGLVP++NK HA   MVAYKSPE +++D R TRKTDVW LGILILELLTGKFPANYLRQGKG NADLA+WVNSVVREEWTGEVFD  M+ TKN E EMLKLLKIGMCCCEW V+RRWDL EA+ KI+ LKE +ND+D SS AS+GE  SS+ MT+D+F+FS+ G
Sbjct:   21 SSSDSNAAILITFKNLLTNSEALYNWNETVNPC-----NWVGLHCKDGAIDKLALESMGLSGKIDIDLLVQLPKLRALSLMNNSFEGPLPA-LNKLASLRALYLSSNKFSGELADDAFAGMNSLIQLYLANNNFTGPIPSSLLPLSKLVRLSLENNQFEGQIPDFQQNFSLFNVSNNHLNGEIPAALASINPTSFAGNDGLCGKPLSACKSSKKKTI--IIIVVVTASVIALAVLI--AFAYFRGSRKKTTQVKQLQVQGTKAQTKFAVMGQNEFARSPDNDHKGQLHLVRNDRERFDLQDLLRASAEVLGSGNFGSSYKALLLDGPAMVVKRFREMNNVGKQEFQEHMSRLGRLSHRNLLPLVAFYYRKDEKLLIFDFVENGSLASHLHAKRASGQPALDWPTRLKIVKGVARGLAYLHKEFPTLTLPHGHLKSSNVLLDHTFEPLLTDYGLVPVVNKPHAQQVMVAYKSPEFTRSD-RTTRKTDVWSLGILILELLTGKFPANYLRQGKGANADLATWVNSVVREEWTGEVFDMDMRGTKNGEGEMLKLLKIGMCCCEWRVERRWDLREAVDKIEELKERDNDDDLSSNASEGEFCSSRAMTEDDFSFSING 623    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251V9K7 ((Putative leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:OTG31949.1}))

HSP 1 Score: 735.332 bits (1897), Expect = 0.000e+0
Identity = 370/620 (59.68%), Postives = 459/620 (74.03%), Query Frame = 0
 
Query:   19 SDDSEAEILLDFKKSLSNAGALSNWN-EEVSLCTGDKGNWNGLLCLK-GSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLIANFTNNKLEGPIPSALSDEPSSSFAGNNLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIK-------YNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNNDEDQSSYASDGEAYSSKGMTDDEFTFSVT 629
            SD+ +   L  F+ SL+NA ALSNWN ++   C G+  NW G++C K G+ +GL+LE+MGLSG ID+++L+++  +RT+SFMNNNF G  P N++K+ SL  ++LSNN FSG I  DAFKGM  +R+V LGNN+F+GKIP SL+ L  LVDLQLQNN F G+IP+ +QKDL  NF NNKL+G IP  L ++  SSFAGNNLCG P+ +C  +  K   K+ II+A   ++A+   II  L + R    +K E     I        Y  +   +V +       YK+++  GKLHFV+ D ERFEL+DLLRASA+VLGSGS GSSYKA+L     +VVKR+K+M NVGK EF+ HMR LG LSHPNLLPLVAFYY K+EKLL+ DFA NGSLASHLH   K ++P LDW TRL+IIKGVA+GL+HLY+ FP L LPHGHLKSSNVLLDE F PLL+DY LVP++NK+HA H MVAYKSPE +Q+ H  T+KTDVWCLGILILE+LTGK+PANYL QGKGG  DL +WVNSVVREEWTGEVFD  MK TKN E EMLKLLKIGM CCEW+V RR+D+ E + KI GLKE  +DE+ SSYAS+G+ YSS+ M DD F+FSVT
Sbjct:   27 SDEQDPARLRTFRASLNNAEALSNWNPDDKPPCDGEVPNWKGIMCNKDGNVYGLQLENMGLSGTIDMDTLAEIASIRTLSFMNNNFEGLMP-NVSKIGSLHGIFLSNNKFSGGIGGDAFKGMGSLRKVELGNNNFVGKIPISLSQLPILVDLQLQNNGFEGKIPDFEQKDLKVNFANNKLDGHIPKGLRNQAPSSFAGNNLCGKPLKDCKETLNK---KMIIIIAVVSSLAVLTAIILVLKIFRTQSKRKNEYKNHQITKMDRTTTYKANANNQVQMHTKQDQTYKRSDNGGKLHFVRTDRERFELEDLLRASADVLGSGSFGSSYKAMLAGRNPMVVKRFKEMGNVGKEEFHAHMRLLGGLSHPNLLPLVAFYYKKDEKLLVTDFAANGSLASHLHGKRKPDEPGLDWATRLKIIKGVARGLDHLYEEFPRLSLPHGHLKSSNVLLDEDFNPLLSDYALVPVINKDHAQHLMVAYKSPEFTQHRH-TTKKTDVWCLGILILEMLTGKYPANYLEQGKGGKPDLGTWVNSVVREEWTGEVFDKEMKGTKNGEGEMLKLLKIGMGCCEWDVARRYDIREVVEKIQGLKEREDDEEFSSYASEGDGYSSRAMDDDNFSFSVT 641    
BLAST of XM_017388785.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GI23 ((Leucine-rich repeat protein kinase family protein, putative {ECO:0000313|EMBL:EOY29078.1}))

HSP 1 Score: 735.332 bits (1897), Expect = 0.000e+0
Identity = 376/615 (61.14%), Postives = 463/615 (75.28%), Query Frame = 0
 
Query:   21 DSEAEILLDFKKSLSN-AGALSNWNEEV-SLCTGDKGNWNGLLCLKGSFFGLRLESMGLSGIIDVESLSKLPYLRTVSFMNNNFNGPFPGNMNKMSSLRALYLSNNNFSGEIPEDAFKGMNLMRRVYLGNNHFMGKIPKSLAGLSKLVDLQLQNNKFVGRIPNLKQKDLI-ANFTNNKLEGPIPSALSDEPSSSFAGN-NLCGAPMAECPPSKKKSVPKVAIIVAAAVAIALAIIIISSLLLHRQNRSKKTENNETWIKYNYDQKKEVGLPKHTTDKYKKTEPAGKLHFVKNDTERFELQDLLRASAEVLGSGSSGSSYKAILLSGPAVVVKRYKQMSNVGKAEFYEHMRNLGSLSHPNLLPLVAFYYTKEEKLLINDFAENGSLASHLHSNPKRNQPRLDWPTRLRIIKGVAKGLEHLYKAFPNLPLPHGHLKSSNVLLDETFAPLLADYGLVPMMNKEHAHHFMVAYKSPESSQNDHRLTRKTDVWCLGILILELLTGKFPANYLRQGKGGNADLASWVNSVVREEWTGEVFDNAMKRTKNAEAEMLKLLKIGMCCCEWNVDRRWDLNEAIAKIDGLKEGNND-EDQSSYASDGEAYSSKGMTDDEFTFSVTG 630
            ++EA ILL FK SLSN   ALS+WN+   S CTGD  NW GL C  G+ FGLRLESMGL G+ID+++L++LP LRT+SFMNN+F+G  P ++NK++SLRALYLS N FSGEI E+ F  MN +++VYL  N+F GKIPKSLA L +L +L L+ N+F G+IP+ +QKDLI  N  +N+LEG IP +L+   SS FAGN  LCG P+ +C  SKK+++  + I V A   ++LA I   S +      + + +N +     N   +KE      +++ Y+K E A KL+F++N+  RFELQDLLRASAEVLGSGS GSSYKA+LL G A+VVKR++QM+NVGK EF  HM  LG L HPNLL LVAFYY KEEKLL++DF  NGSLA HLH+    +Q  LDWPTRL+IIKGVAKGL +LYK  P+L LPHGHLKSSNVLLD  F PLL DYGL+P++NKEHA  FMVAYKSPE +Q D R T KTDVW LGILILELLTGKFPANYL+QGKGGN DLA+WVNSVVREEWTGEVFD  MK TKN E EMLKLLKIGMCCCEWN +RRW+L +A+ KI+ LKE ++D ED SS  S+G+AYSS+ +T+D F+FSV G
Sbjct:   26 ETEATILLRFKNSLSNHESALSDWNDSAPSPCTGDNSNWTGLRCSNGTIFGLRLESMGLMGVIDIDTLTELPLLRTLSFMNNSFDGQLP-DVNKLTSLRALYLSYNRFSGEIRENGFAAMNSLQKVYLARNNFSGKIPKSLAALPRLSELSLEGNRFEGKIPDFQQKDLIMVNLADNQLEGRIPDSLTKMNSSLFAGNKGLCGKPLPQCKSSKKRNI--IIITVVAGSVVSLAAIAAVSYIRSGPTTTSQVKNFQEKNAGNIVGRKEA----QSSNHYRKAENA-KLYFIRNERGRFELQDLLRASAEVLGSGSFGSSYKAVLLDGRAMVVKRFRQMNNVGKEEFRAHMGRLGMLFHPNLLSLVAFYYRKEEKLLVSDFVPNGSLAGHLHARRAPDQSGLDWPTRLKIIKGVAKGLAYLYKELPSLTLPHGHLKSSNVLLDHNFEPLLTDYGLMPVINKEHAQQFMVAYKSPEFTQYD-RTTTKTDVWSLGILILELLTGKFPANYLKQGKGGNVDLATWVNSVVREEWTGEVFDKDMKSTKNGEGEMLKLLKIGMCCCEWNTERRWELKDAVEKIEELKERDSDMEDCSSCGSEGDAYSSRAITEDGFSFSVNG 631    
Match NameStatsDescription
A0A7J0GYC0E-Value: 0.000e+0, PID: 64.15(Leucine-rich repeat protein kinase family protein... [more]
A0A2R6QPD8E-Value: 0.000e+0, PID: 63.42(Pollen receptor-like kinase {ECO:0000313|EMBL:PSS... [more]
A0A5J5ADI5E-Value: 0.000e+0, PID: 62.28Protein kinase domain-containing protein {ECO:0000... [more]
A0A2R6PNE8E-Value: 0.000e+0, PID: 62.74(Pollen receptor-like kinase {ECO:0000313|EMBL:PSR... [more]
A0A5N6MW01E-Value: 0.000e+0, PID: 60.06Protein kinase domain-containing protein {ECO:0000... [more]
A0A6I9SZ97E-Value: 0.000e+0, PID: 61.69(probable LRR receptor-like serine/threonine-prote... [more]
A0A834YW47E-Value: 0.000e+0, PID: 59.78(Uncharacterized protein {ECO:0000313|EMBL:KAF8392... [more]
A0A2C9UBC3E-Value: 0.000e+0, PID: 61.07Protein kinase domain-containing protein {ECO:0000... [more]
A0A251V9K7E-Value: 0.000e+0, PID: 59.68(Putative leucine-rich repeat protein kinase famil... [more]
A0A061GI23E-Value: 0.000e+0, PID: 61.14(Leucine-rich repeat protein kinase family protein... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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