XM_017388814.1

Resource Type: 
Polypeptide
Name: 
XM_017388814.1
Identifier: 
XM_017388814.1-protein
Sequence: 
MKRWGETITVVVLAVTMKSIRILQKCECHSRGPQTTVICRKKHFATAEAS
AAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYL
RYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKI
KNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNI
QTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSK
KTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTI
YRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKE
MADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYG
NKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQ
PKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFG
VVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEY
NVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPKQTN
Sequence Length: 
595
Sequence Checksum: 
98162ac7d84fa9983506026dcb60d33f
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017388814.1, derives from mRNA, XM_017388814.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AXR0 ((cysteine-rich receptor-like protein kinase 3 {ECO:0000313|RefSeq:XP_016481450.1}))

HSP 1 Score: 650.973 bits (1678), Expect = 0.000e+0
Identity = 318/555 (57.30%), Postives = 404/555 (72.79%), Query Frame = 0
 
Query:   40 RKKHFATAEASAAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSS--KKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 592
            + K FAT +    + +Y + +CR YLS ADCV+C++ A   I + C   NGARV YDGC+LRYE  +F+ E  L  ++ +C  N+T         VA QLL DL+ ATP+I  F+ A KR+V        A VT+Y VAQC  T+++  C  CL   Y NI+ CL +       G +    CF+RYS   FF+DN  T+I P+L +G SS  KK  II G VG+V LLL+ +A+ LWYR S+K +   RG+ILG T+L+GP  YR+KDL+ AT++F E  K+GEGGFGDVYKG + NG++VAVKK A+ +S+  ADFE+EVRLI+NVHHRN+IRLLGCS KG   +LVYEYM NGSL+ +LYG+KRG L+WKQR DII GIARGLAYLHEQFHVCIIHRD+KSSNILLDD+FQPKIADFGL RLLP D SH++T+FAGTLGYTAPEYAI+GHL+EKVD Y FGVVVLE++SG+  N M+ E +T+ LLE AWK + +G  E L+DET+D +EYN + AKK+IEIAL CTQSP +LRPTMSEVVVML++D S + +
Sbjct:   69 QDKRFATTQ----QAIYAMVECRKYLSKADCVSCYDTAVTLI-RTCSGANGARVTYDGCFLRYESNNFYQETTLPGNAAICG-NRTASQPNTLNPVAQQLLNDLSMATPRISGFYAATKREV--------AGVTLYGVAQCAETITKSGCQDCLTVAYKNIEGCLPKYAE----GRAVDAACFMRYSNRAFFADNKTTDITPFLGEGGSSNKKKAGIIGGVVGSVGLLLIVLAVFLWYRLSRKPKATERGNILGATELRGPMSYRFKDLRIATQDFDESNKLGEGGFGDVYKGTLKNGHVVAVKKLAIFSSRAKADFETEVRLISNVHHRNLIRLLGCSNKGADLLLVYEYMANGSLERYLYGDKRGMLNWKQRFDIIFGIARGLAYLHEQFHVCIIHRDIKSSNILLDDEFQPKIADFGLVRLLPEDQSHVSTKFAGTLGYTAPEYAIHGHLTEKVDVYSFGVVVLEIISGRRSNDMQIEPVTEYLLEKAWKLHESGMPEKLVDETLDPNEYNEQEAKKIIEIALMCTQSPANLRPTMSEVVVMLLSDRSTDAR 605    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RJ58 ((Cysteine-rich receptor-like protein kinase {ECO:0000313|EMBL:PSS30066.1}))

HSP 1 Score: 640.188 bits (1650), Expect = 0.000e+0
Identity = 335/558 (60.04%), Postives = 403/558 (72.22%), Query Frame = 0
 
Query:   34 QTTVICRKKHFATAE-ASAAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPE 590
            ++ +    K FATA+ A  ++PVY + QCR+Y+STADC ACF+ A A I + C   NGARVIYDGC+LRYE   F+ +  L  +  +C+ N+T  + +AF      L+ DL  ATP+I  FF A KR+V  GG     S+TVYAVAQC  TVS+  C  CL   Y N+Q+C   + G +        GCFLRYS T FFS+N  TNI P+L  GSS+   AII G VG    LLL + L+LWY+ S+K + A RG+ILG T+LQGP  + YKDLKSAT +FSEE K+GEGGFGDVYKG + NGNIVAVKK A+ +S+  ADF SEV LI+NVHHRNI+RLLGC  KGP  +LVY+ M NGSLD FLYG +RG L+WKQR DII G A+GLAYLHEQFHVCIIHRD+K SNILLDD  QPKIADFGLARLLP D SHL+TRFAGTLGYTAPEYAI+G LSEKVDTY FGVVVLE++SG+ CN M  E +T+ LLE AWK Y N  H +L+DET+DS+EY  E  KK+IEIAL CTQSP S RPTMSEVVV+LV   S +
Sbjct:   82 RSQIASEGKRFATAQQARTSDPVYVMAQCRNYMSTADCTACFDAAVALI-RNCSGANGARVIYDGCFLRYESNGFYDQTTLPGNVGICS-NRTASSASAFDSAVQGLVADLKAATPRITGFFAAVKREVVAGG-----SITVYAVAQCAETVSESGCRDCLTVAYGNLQSCPPDAEGRA-----VDAGCFLRYSDTAFFSNNQTTNIAPFLGGGSSNNNKAIIGGVVGGGGSLLLILGLILWYKLSRKAKKALRGNILGATELQGPVTFSYKDLKSATNDFSEENKLGEGGFGDVYKGTLKNGNIVAVKKLAIGSSRAKADFASEVTLISNVHHRNILRLLGCCSKGPELLLVYDCMTNGSLDKFLYGERRGVLNWKQRFDIIFGTAKGLAYLHEQFHVCIIHRDIKPSNILLDDSLQPKIADFGLARLLPQDQSHLSTRFAGTLGYTAPEYAIHGQLSEKVDTYSFGVVVLEIISGRRCNDMIVEPVTEYLLEQAWKLYENDMHMNLVDETLDSNEYTEEEMKKVIEIALMCTQSPASSRPTMSEVVVLLVTKHSTD 627    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067LER0 ((Uncharacterized protein {ECO:0000313|EMBL:KDP46966.1}))

HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 313/552 (56.70%), Postives = 396/552 (71.74%), Query Frame = 0
 
Query:   43 HFATA-EASAAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKE-MADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 592
            HFA A +   A+ V+ + QCRDY+STA+C+ACF  A+ ++ + C   NG RV+YDGC+LRYE   F+ E     + E C +N+T    AAF   A  LL+DL  ATP+I  FF A+KR +        ++ +VY +AQC+  +    C  C+   Y+NIQ CL ++ G +        GCF+RYS  PFF+DN   N+ P+L+ GSSSKKTA+IAG  G V L+LL I L  W++ S +R+ A+R +ILG T+L+GP  Y YKDLKSAT NF EE K+GEGGFGDVYKG + NG IVAVKK A+  S+   ADF SEV LI+NVHHRN++RLLGC  KGP  +LVYEYMEN SLD FL+G ++G+L WKQR DIILG A+GLAYLHEQFHVCIIHRD+K +NILLDDDFQPKIADFGLARLLP D SHL+TRFAGTLGYTAPEYAI+G LSEKVDTY +GVVVLE++SG+  ++M  +  +  LL+ AWK Y NGTH +L+DE++   EY  E  KK+IEIAL CTQ+  +LRPTMSEVVV+L +  S E +
Sbjct:   50 HFAIAKQLEGADGVFAMVQCRDYMSTAECIACFRAASIEV-RSCSPGNGGRVVYDGCFLRYERNDFYGETTRDANREYC-ENQTTSLTAAFQTTADSLLRDLQIATPRINGFFTASKRDIV-----GVSNASVYGIAQCVQIIDMSGCLACMQVAYANIQRCLPKTDGRA-----VDSGCFMRYSNKPFFADNQTINLEPFLKTGSSSKKTALIAGVAGGVGLILLIIGLFAWFKLS-RRKAASRANILGATELRGPINYNYKDLKSATGNFKEENKLGEGGFGDVYKGTLKNGKIVAVKKLALSQSRRAQADFASEVTLISNVHHRNLVRLLGCCSKGPELLLVYEYMENTSLDRFLFGKRKGSLIWKQRFDIILGTAQGLAYLHEQFHVCIIHRDIKPNNILLDDDFQPKIADFGLARLLPEDKSHLSTRFAGTLGYTAPEYAIHGQLSEKVDTYSYGVVVLEIISGKKGSEMIADPGSDYLLKRAWKLYENGTHLELVDESLGPDEYEAEEVKKIIEIALMCTQASHALRPTMSEVVVLLKSTGSLEHR 588    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GM19 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN06262.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN06262.1}))

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 315/554 (56.86%), Postives = 399/554 (72.02%), Query Frame = 0
 
Query:   42 KHFATAE-ASAAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKG--SSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 592
            + FATA+ A ++ P Y + QCR+Y+S  DC+AC++ A + I + C   NGARVIYDGC+LRYE  +F+ +     + ++C  N+T P  A   + A  LL+DL  ATP+I  +F A  RQV +GG     ++T+Y VAQC  T+SQ  C  CL   Y NI  CL  + G +         CFLRYS  PFF+DN   +I P+L  G  SS +K  I     G   L+L+ IA+ LWY+ S+K + A RGDILG T+LQGP IY YKDLK+AT NFSEE K+GEGGFGDVYK  ++NGNIVAVKK  +  S+  ADFE+EVRL++NVHHRN++RLLGC  KG   +LVYEYM NGSLD FLYGNKRG L+WKQR DII G A GLAYLHEQ+HVCIIHRD+K SNILLDD+FQ KIADFGLARLLP + SH++T+FAGTLGYTAPEYA++GHLSEKVDTY FGV++LE++SG+  + M  +  T+ LLE AWK Y+ G HE L D+T+D++EY  ++ KKM+EIAL CTQSP S RPTMSEV+VML++D+S E K
Sbjct:   72 RRFATAQQARSSNPAYAMVQCRNYMSQPDCLACYDAAVSLI-RNCSAANGARVIYDGCFLRYESNNFYDQTTQPGNVQICG-NRTAPQAATLAVEAQALLRDLEVATPRINGYFAATTRQVLNGG-----NLTIYGVAQCAETISQTGCQDCLTVAYGNIDGCLPNADGRA-----IDAACFLRYSDMPFFADNQTIDITPFLGGGGNSSKEKAIIGGAVGGGGGLILILIAVFLWYKFSRKPKAARRGDILGATELQGPNIYSYKDLKAATNNFSEENKLGEGGFGDVYKATLTNGNIVAVKKLDISYSRAKADFETEVRLVSNVHHRNLVRLLGCCSKGSELLLVYEYMANGSLDRFLYGNKRGALTWKQRFDIIFGTASGLAYLHEQYHVCIIHRDIKPSNILLDDEFQAKIADFGLARLLPENQSHVSTKFAGTLGYTAPEYAVHGHLSEKVDTYSFGVMILEIISGRRSSDMNVDSDTEYLLEEAWKLYDTGMHEKLADDTLDANEYKPDDLKKMVEIALLCTQSPPSSRPTMSEVLVMLISDSSVEKK 613    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TAM3 ((cysteine-rich receptor-like protein kinase 2 {ECO:0000313|RefSeq:XP_027074917.1}))

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 320/550 (58.18%), Postives = 398/550 (72.36%), Query Frame = 0
 
Query:   40 RKKHFATAEAS-AAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDAS 588
            + K FATA+ S +++PVY + QCRDY+S+ADCVACFN A A I + C   NGARVIYDGC+LRYE  +F+ +  L  + ++C+ N+T      F   A  LLKDL  ATP+I  +F A+KRQV          V+VY VAQC  T+S+  C  CL   Y NIQ CL      +  G +   GCFLRYS T FF DN  TNI P+L+ G SSKK AII G VG   LL++ +AL LWYR  +K + A +G+ILG T+LQGP  Y +  LK+AT NFSEE K+GEGGFG+VYKG + NG IVAVKK  + + +  A+FESE +LI+NVHHRN+IRLLGC+ KGP  +LV+EYM NGSLD +LYG+K+G L+WKQR DII G ARGLAYLH+Q+HV IIHRD+K SNILLDDDFQPKI DFGLARL+P D SHL+T+FAGTLGYTAPEYAI+GHLSEKVDTY FGVVVLE++SG+  + M  E +++ LLE AWK Y N  H  L+D T+D ++Y  E+ KK++EIAL CTQS  S RPTMSEVVVML ++ S
Sbjct:   66 QNKLFATAQQSRSSDPVYAMVQCRDYVSSADCVACFNAAVAQI-RNCSAANGARVIYDGCFLRYESNNFYDQNTLPGNVQICS-NRTASQATIFGAEAQALLKDLQLATPRINGYFAASKRQV-------SPDVSVYGVAQCAQTISESGCEDCLTVAYGNIQGCLP-----NADGRAIDAGCFLRYSQTSFFPDNQTTNITPFLRGGKSSKKKAIIGGVVGGAGLLMVALALYLWYRLHRKPKAAQKGNILGATELQGPVTYNFNVLKTATNNFSEESKLGEGGFGEVYKGALKNGTIVAVKKLNITSGRAKANFESEAKLISNVHHRNLIRLLGCASKGPELLLVHEYMANGSLDRYLYGDKKGYLNWKQRFDIIFGTARGLAYLHDQYHVSIIHRDIKPSNILLDDDFQPKICDFGLARLMPEDRSHLSTKFAGTLGYTAPEYAIHGHLSEKVDTYSFGVVVLEIISGRRSSDMTIEPVSEYLLEQAWKLYENDMHLKLVDATLDPNDYRTEDMKKILEIALICTQSQPSDRPTMSEVVVMLSSEGS 601    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TWX6 ((cysteine-rich receptor-like protein kinase 2 {ECO:0000313|RefSeq:XP_011085909.1}))

HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 321/553 (58.05%), Postives = 397/553 (71.79%), Query Frame = 0
 
Query:   42 KHFATAEAS-AAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQ-KGSSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 592
            + FATA+   +++PVY + QCR+YLS  DC+ACF+ A + I + C   NGARVIYDGC+LRYE  +F+ +  L  + ++C  N+T P  AAF      LL DL  ATP+I  +F A +R+V  GG     ++T+Y VAQC  TV+   C  CL   + NIQ CL  + G +         CFLRYS TPFF+DN   +I P+L+ +G SSKK AII G VG   L+L+ +A  LWY+ S+K +   RG+ILG T+LQGP IY YKDLK+AT NFSEE K+GEGGFGDVYK  + NGNI+AVKK  + + +  ADFE+EVRLI+NVHHRN++RLLG   KG   +LVYEYM NGSLD FLYG+KRG L+WKQR +II G ARGLAYLHEQ+H CIIHRD+K SNILLDDDFQ KIADFGLARLLP + SH++T+FAGTLGYTAPEYAI GHLSEKVDTY FGVV+LE++SG+  N M  +  T  LLE AWK Y  G H  L+DET+DSS+Y  E  KK++EIAL CTQSP S RPTMSEV+VML+ D S E K
Sbjct:  126 RRFATAQQERSSDPVYAMVQCRNYLSEPDCLACFDAAVSQI-RNCSAANGARVIYDGCFLRYESNNFYDDTTLPGNIQICG-NRTAPQPAAFGAAGQTLLTDLEVATPRINRYFAATRREVTVGG-----NLTIYGVAQCAETVTPSGCLDCLTVAHKNIQGCLPDADGRA-----IDAACFLRYSDTPFFADNQTVDITPFLRGEGDSSKKKAIIGGVVGGGGLVLILLAFFLWYKFSRKPKATLRGNILGATELQGPNIYSYKDLKAATNNFSEENKLGEGGFGDVYKATLKNGNIIAVKKLDISSGRAKADFETEVRLISNVHHRNLVRLLGYCSKGSELLLVYEYMANGSLDRFLYGDKRGALTWKQRYNIIFGTARGLAYLHEQYHECIIHRDIKPSNILLDDDFQTKIADFGLARLLPENQSHVSTKFAGTLGYTAPEYAIAGHLSEKVDTYSFGVVILEIISGRRSNDMNADSDTGFLLEEAWKLYETGMHLKLVDETLDSSDYTAEELKKLLEIALTCTQSPASSRPTMSEVLVMLLGDRSAEQK 666    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HFY2 ((Uncharacterized protein {ECO:0000313|EMBL:CCB51101.1}))

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 315/550 (57.27%), Postives = 394/550 (71.64%), Query Frame = 0
 
Query:   36 TVICRKKHFATAEASAAE-PVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAV-RTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVML 583
            T +   K FATA+ + +   VY L QCR+Y+ST DCVACFN A +DI + C   NGARVIYDGC+LRYE  SF+ E     ++ +C  N+T     AF      LL DL  ATP+  + + A K++V  GG       TVY VAQC+   S   C +CL     NI++CL      S  G +   GCFLRYS TPFF+DN  T+I+P+L+KG S+KK AII G VG V L LL I L +W++ S++ + A RGD+LGV +LQGP  Y ++DLKSATKNF  E K+G+GGFGDVYKG + NG  VAVKK  + + ++  ADFESEV++I+NVHHRN++RLLGC  KG   +LVYEYM N SLD FL+G +RG L+W+QR DII+G ARGLAYLHE+FHVCIIHRD+KSSNILLD+DFQP+IADFGLARLLP D +HL+T+ AGTLGYTAPEYAI G LSEKVDTY +GVVVLE++SG+ CN+MK E +T+ LLE AW  Y N  H +L+DE++D  EY  E  KK+IEIAL CTQS VS+RPTMSEVV +L
Sbjct:   61 TQLSDNKRFATAQRTRSTGTVYGLAQCRNYMSTEDCVACFNTAQSDI-RNCSSANGARVIYDGCFLRYESSSFYDETTGSGNTAICG-NQTAAQATAFQEAVNGLLSDLETATPRTNDSYAAYKKEVVGGG-----GATVYGVAQCVERASASACKECLKVADGNIKSCLP-----STDGRAVDAGCFLRYSNTPFFADNQTTDILPFLEKGGSTKKKAIIGGVVGGVCLFLLLIMLFVWHQHSRRAKAAPRGDMLGVPELQGPVNYSHRDLKSATKNFRAEYKLGKGGFGDVYKGYLKNGTTVAVKKLIIGQPNRAKADFESEVKIISNVHHRNLLRLLGCCKKGSELLLVYEYMVNSSLDKFLFGERRGALNWRQRFDIIVGTARGLAYLHEEFHVCIIHRDIKSSNILLDNDFQPRIADFGLARLLPEDQTHLSTKVAGTLGYTAPEYAILGQLSEKVDTYSYGVVVLEIISGRKCNEMKAEDVTEYLLERAWTLYENDKHLELVDESLDPEEYKAEEVKKIIEIALMCTQSSVSMRPTMSEVVFLL 598    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TII9 ((cysteine-rich receptor-like protein kinase 2 {ECO:0000313|RefSeq:XP_027078268.1}))

HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0
Identity = 315/557 (56.55%), Postives = 397/557 (71.27%), Query Frame = 0
 
Query:   40 RKKHFATAEAS-AAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSSKK--TAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPKQ 593
            + K FATA+ S +++PVY + QCRDY+S+ADCVACFN A A I + C   NGARVIYDGC+LRYE  +F+ +  L  + ++C+ N+T      F   A  LLKDL  ATP+I  +F A+KRQV          V+VY VAQC  T+S+  C  CL  GY NIQ CL      +  G +   GCFLRYS T FF DN  TNI P+L  G SSKK        G   + ++++ +AL LWYR  +K + A +G+ILG T+LQGP  Y +  LK+AT NFSEE K+GEGGFG+VYKG + NG IVAVKK  + + +  A+FESE +LI+NVHHRN+IRLLGC+ KGP  +LV+EYM NGSLD +LYG+K+G L+WKQR DII G ARGLAYLH+Q+HV IIHRD+K SNILLDDDFQPKI DFGLARL+P D SHL+T+FAGTLGYTAPEYAI+GHLSEKVDTY FGVVVLE++SG+  + M  E +++ LLE AWK Y N  H  L+D T+D ++Y  E+ KK++EIAL CTQS  S RPTMSEVVVML ++ S E ++
Sbjct:   66 QNKLFATAQQSRSSDPVYAMVQCRDYVSSADCVACFNAAVAQI-RNCSAANGARVIYDGCFLRYESNNFYDQSTLPGNVQICS-NRTASQATIFGAEAQALLKDLQLATPRINGYFAASKRQV-------SPDVSVYGVAQCAETISESGCEDCLTVGYGNIQGCLP-----NADGRAIDAGCFLRYSQTSFFPDNQTTNITPFLGGGKSSKKKAIIGGVVGGAGLLMVMVALALYLWYRLHRKPKAAQKGNILGATELQGPVTYNFNVLKTATNNFSEESKLGEGGFGEVYKGALKNGTIVAVKKLNITSGRAKANFESEAKLISNVHHRNLIRLLGCASKGPELLLVHEYMANGSLDRYLYGDKKGYLNWKQRFDIIFGTARGLAYLHDQYHVSIIHRDIKPSNILLDDDFQPKICDFGLARLMPEDRSHLSTKFAGTLGYTAPEYAIHGHLSEKVDTYSFGVVVLEIISGRRSSDMTIEPVSEYLLEQAWKLYENDMHLKLVDATLDPNDYRTEDMKKILEIALICTQSQPSDRPTMSEVVVMLSSERSSEQQR 608    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2VDJ3 ((Uncharacterized protein {ECO:0000313|EMBL:PHT31036.1}))

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 316/555 (56.94%), Postives = 407/555 (73.33%), Query Frame = 0
 
Query:   40 RKKHFATAEASAAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQKGSSS--KKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 592
            + K FAT +    + VY + +CR Y+S ADCV C++ A + I + C   NGARV YDGC+LRYE  +F+ +  L  ++E+C  N+T     A + VA+QLL DL+ ATP+I  FF A KR+         + VTVY +AQC  T+++  C  CL   Y NI+ CL +       G +    CF+R+S   FF+DN  T+I P+L  G SS  KKTAII   VG V LLL+ +A+LLWYR S+K +TA RG+ILG T+L+GP  + +KDLK ATK+F+E  K+GEGGFGDVYKG + NGN++AVKK A+ +S+  ADFE+EVRLI+NVHHRN+IRLLGCS KG   +LVYEYM NGSL+ ++YG+KRG L+WKQR +II G ARGLAYLHEQFHVCIIHRD+KSSNILLDD+FQPKIADFGL RLLP D SHL+T+FAGTLGYTAPEYAI+GHL+EKVD Y FGVVVLE++SG+  N M+ E +T+ LLE+AWK +  GT   L+DET+D +EY+ +  KK+IEIAL CTQSP +LRP+MSEVVVML++D S + +
Sbjct:   66 QDKRFATTQ----QAVYAMVECRKYMSRADCVTCYDAAVSLI-RTCAGANGARVTYDGCFLRYESNNFYQDTTLPGNAEICG-NRTSSQPNALSPVAIQLLNDLSIATPRISGFFAATKREA--------SGVTVYGIAQCAETITESGCQDCLTVAYKNIEGCLPKYAE----GRAVDAACFMRFSDRSFFADNMKTDITPFLGGGGSSNKKKTAIIGAVVGGVGLLLIVLAMLLWYRLSRKPKTAERGNILGATELRGPMSFSFKDLKIATKDFNESNKLGEGGFGDVYKGTLKNGNVIAVKKLAMISSRAKADFETEVRLISNVHHRNLIRLLGCSNKGAELLLVYEYMANGSLERYIYGDKRGMLNWKQRFNIIFGTARGLAYLHEQFHVCIIHRDIKSSNILLDDEFQPKIADFGLVRLLPEDQSHLSTKFAGTLGYTAPEYAIHGHLTEKVDVYSFGVVVLEIISGRRSNDMQVEPVTEYLLEHAWKLHEAGTSVKLVDETLDPNEYSEQEVKKVIEIALMCTQSPANLRPSMSEVVVMLLSDRSTDSR 602    
BLAST of XM_017388814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GLS9 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN06261.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN06261.1}))

HSP 1 Score: 633.254 bits (1632), Expect = 0.000e+0
Identity = 316/556 (56.83%), Postives = 402/556 (72.30%), Query Frame = 0
 
Query:   42 KHFATAE-ASAAEPVYTLFQCRDYLSTADCVACFNVATADIGKICKLNNGARVIYDGCYLRYEVRSFFTEIELGTSSEVCADNKTVPAQAAFTLVAVQLLKDLADATPKIKNFFGAAKRQVFDGGPSAKASVTVYAVAQCLGTVSQGDCGKCLMGGYSNIQTCLSQSGGSSGGGSSASGGCFLRYSVTPFFSDNDITNIMPYLQK----GSSSKKTAIIAGGVGAVSLLLLTIALLLWYRSSQKRRTANRGDILGVTKLQGPTIYRYKDLKSATKNFSEECKIGEGGFGDVYKGIISNGNIVAVKKHAVRTSKEMADFESEVRLIANVHHRNIIRLLGCSGKGPVQILVYEYMENGSLDTFLYGNKRGTLSWKQRIDIILGIARGLAYLHEQFHVCIIHRDVKSSNILLDDDFQPKIADFGLARLLPTDPSHLTTRFAGTLGYTAPEYAINGHLSEKVDTYGFGVVVLEVLSGQNCNKMKNELLTQSLLEYAWKSYNNGTHEDLIDETIDSSEYNVENAKKMIEIALKCTQSPVSLRPTMSEVVVMLVNDASPEPK 592
            + FATA+ A ++ P Y + QCR+Y+S  DC+AC++ A ++I ++C   NGARVIYDGC+LRYE  +F+ +  L  + ++C  N+T P  A FT+ A  LL+DL  ATP+I  +F A  RQV +GG     ++T+Y VAQC  T+SQ  C  CL   Y NIQ CL      +  G +    CFLRYS   FF+DN  T+I P+L       SS KK  I     G V L+L+  AL LWY+ S+K + A R +ILG T+LQGP IY YKDLK+AT NFSEE K+GEGGFGDVYK  + NGNIVAVKK  +  S+  ADFE+EVRLI+NVHHRN++RLLGC  KG   +LVYEYM NGSLD FLYG KRG L+WKQR DII G ARGLAYLHEQ+HVCIIHRD+K SNILLD++FQ KIADFGLARLLP + SH++T+FAGTLGYTAPEYA++GHLSEKVDTY FGV++LE++SG+  + +  +  T+ LLE AWK Y+ G HE L D+T+D++EY +++ KKM+EIAL CTQS  S RPTMSEV+VML++D+S E K
Sbjct:   72 RRFATAQQARSSNPAYAMVQCRNYMSQPDCLACYDAAVSEI-RLCSAANGARVIYDGCFLRYESNNFYNQTTLPGNVQICG-NRTAPQAATFTVEAQALLRDLEVATPRINGYFAATTRQVSNGG-----NLTIYGVAQCAETISQTGCEDCLTVAYGNIQGCLP-----NADGRAIDAACFLRYSDRAFFADNQTTDITPFLGGGGGGNSSKKKAIIGGAVGGGVGLILILFALFLWYKFSRKPKAARRSNILGATELQGPNIYSYKDLKAATNNFSEENKLGEGGFGDVYKATLKNGNIVAVKKLDISYSRAKADFETEVRLISNVHHRNLVRLLGCCSKGSELLLVYEYMANGSLDRFLYGEKRGALTWKQRFDIIFGTARGLAYLHEQYHVCIIHRDIKPSNILLDNEFQAKIADFGLARLLPENQSHVSTKFAGTLGYTAPEYAVHGHLSEKVDTYSFGVMILEIISGRRSSDVNVDSDTEYLLEEAWKLYDTGMHEKLADDTLDANEYKLDDLKKMVEIALLCTQSSPSSRPTMSEVLVMLISDSSVEKK 615    
Match NameStatsDescription
A0A1S4AXR0E-Value: 0.000e+0, PID: 57.30(cysteine-rich receptor-like protein kinase 3 {ECO... [more]
A0A2R6RJ58E-Value: 0.000e+0, PID: 60.04(Cysteine-rich receptor-like protein kinase {ECO:0... [more]
A0A067LER0E-Value: 0.000e+0, PID: 56.70(Uncharacterized protein {ECO:0000313|EMBL:KDP4696... [more]
A0A2G9GM19E-Value: 0.000e+0, PID: 56.86(Serine/threonine protein kinase {ECO:0000313|EMBL... [more]
A0A6P6TAM3E-Value: 0.000e+0, PID: 58.18(cysteine-rich receptor-like protein kinase 2 {ECO... [more]
A0A6I9TWX6E-Value: 0.000e+0, PID: 58.05(cysteine-rich receptor-like protein kinase 2 {ECO... [more]
F6HFY2E-Value: 0.000e+0, PID: 57.27(Uncharacterized protein {ECO:0000313|EMBL:CCB5110... [more]
A0A6P6TII9E-Value: 0.000e+0, PID: 56.55(cysteine-rich receptor-like protein kinase 2 {ECO... [more]
A0A2G2VDJ3E-Value: 0.000e+0, PID: 56.94(Uncharacterized protein {ECO:0000313|EMBL:PHT3103... [more]
A0A2G9GLS9E-Value: 0.000e+0, PID: 56.83(Serine/threonine protein kinase {ECO:0000313|EMBL... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content