Resource Type:
Polypeptide
Name:
XM_017385424.1
Identifier:
XM_017385424.1-protein
Sequence:
MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKK
VPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQ
SWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQIL
EAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKPTKAKGIEKMNYVCQH
IVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYK
ISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTA
SAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPT
GKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEFTPTKKPEDVR
MTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPT
GDTNEQKQESPKLVNTATEGKPARRRITPMAID
Sequence Length:
483
Sequence Checksum:
9d179120b9e8016e107a8c1ec07206a7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017385424.1, derives from mRNA, XM_017385424.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZBT3 ((Putative chromatin assembly factor 1 subunit FAS2 isoform X2 {ECO:0000313|EMBL:MPA41797.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 358/485 (73.81%), Postives = 400/485 (82.47%), Query Frame = 0
Match: A0A5B6ZBT3 ((Putative chromatin assembly factor 1 subunit FAS2 isoform X2 {ECO:0000313|EMBL:MPA41797.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 358/485 (73.81%), Postives = 400/485 (82.47%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEFT-PTKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
M+GGTVQINWHDTKPVLTLDFHP SG+LATGGAD+DIKLWLI+SGE + KVPSA+Y NSLSYHGSAVN LRFSPSGE+LASGADGGELI+WKLHS+DAGQ+WKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWD+NKGSVHQIL+AH HYVQGVAWDPLAKYVASLSSDR+ RI VNKP TK KG+EKMNYVCQH++TKV+ + VD SKSAK HLFHDETLPSFFRRL+WSPDGSFLLVPAGSYK SP SEP+NT YVFSRK+LSRPALLLPGASKPVVAVRFCP AFSLRG+ ++AFF+LPYR IFAVATLNSLYIYDTESV PIA+ AGLHYAAITDI+WSP GKYLA+SSQDGYC+LVEF ++ELGSPI SE+K T +E P +K +D+ + EAT + D+ GK AEK E KQ SP ++T KPA+RRITPMAID
Sbjct: 1 MKGGTVQINWHDTKPVLTLDFHPPSGILATGGADYDIKLWLIDSGEVQGKVPSASYQNSLSYHGSAVNALRFSPSGEQLASGADGGELIIWKLHSTDAGQTWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNKGSVHQILDAHFHYVQGVAWDPLAKYVASLSSDRTCRIYVNKPQTKTKGLEKMNYVCQHVITKVEPQTVDESKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKFSPASEPVNTAYVFSRKDLSRPALLLPGASKPVVAVRFCPMAFSLRGSNSAAFFRLPYRLIFAVATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSPNGKYLALSSQDGYCTLVEFEEEELGSPISLSEEKKVTGDENNKPAQKQDDIGI-EATRNSGIVGADS------GKAEAEAEKIEG-----------------------KQASPSSISTPIPNKPAKRRITPMAID 455
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BPB0 ((Putative chromatin assembly factor 1 subunit FAS2 isoform X2 {ECO:0000313|EMBL:MPA70284.1}))
HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 353/484 (72.93%), Postives = 393/484 (81.20%), Query Frame = 0
Match: A0A5B7BPB0 ((Putative chromatin assembly factor 1 subunit FAS2 isoform X2 {ECO:0000313|EMBL:MPA70284.1}))
HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 353/484 (72.93%), Postives = 393/484 (81.20%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEFTPTKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
M+GGTVQINWHDTKPVLTLDFHP SG+LATGGAD+DIKLWLI+SGE + KVPSA+Y NSLSYHGSAVN LRFSPSGE+LASGADGGELI+WKLHS+DAGQ+WKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWD+NKG VHQIL+AH HYVQGVAWDPLAKYVASLSSDR+ RI VNKP TK KG+EKMNYVCQH++TKV+ + VD SKSAK HLFHDETLPSFFRRL WSPDGSFLLVPAGSYK SP SEP+NT VFSRK+LSRPALLLPGASKPVVAVRFCP AFSLRG+ ++AFF+LPYR IFAVATLNSLYIYDTESV PIA+ AGLHYAAITDI+WSP GKYLA+SSQDGYC+LVEF DELG PI SE+K ++ + D EATT + GA D++K AE + + E KQ SP ++T KPA+RRITPMAID
Sbjct: 1 MKGGTVQINWHDTKPVLTLDFHPPSGILATGGADYDIKLWLIDSGEVQGKVPSASYQNSLSYHGSAVNALRFSPSGEQLASGADGGELIIWKLHSTDAGQTWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNKGCVHQILDAHFHYVQGVAWDPLAKYVASLSSDRTCRIYVNKPQTKTKGLEKMNYVCQHVITKVEPQTVDESKSAKNHLFHDETLPSFFRRLDWSPDGSFLLVPAGSYKFSPASEPVNTAIVFSRKDLSRPALLLPGASKPVVAVRFCPMAFSLRGSNSAAFFRLPYRLIFAVATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSPNGKYLALSSQDGYCTLVEFEKDELGFPISLSEEKKVMGDDNNKPVQKSDEMGIEATTNNSIV--------GA-----------DSRKAEAEAEKI----------EGKQASPSSISTPIPNKPAKRRITPMAID 455
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZEH2 ((Putative chromatin assembly factor 1 subunit FAS2 isoform X2 {ECO:0000313|EMBL:MPA41796.1}))
HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 349/484 (72.11%), Postives = 392/484 (80.99%), Query Frame = 0
Match: A0A5B6ZEH2 ((Putative chromatin assembly factor 1 subunit FAS2 isoform X2 {ECO:0000313|EMBL:MPA41796.1}))
HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 349/484 (72.11%), Postives = 392/484 (80.99%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEFTPTKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
MRGGTVQINWHDTKP+L+LDFHP SG LATGGADFDIKLWLINS E +KKVP+A+Y NSLSYHGSAVN LRFSPSG++LASGADGGELI+WKLHS+DAGQ+WKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWD+NKGSVHQIL+AH HYVQGVAWDPLAKYVASLSSDR+ RI V KP T+ KGIEKM+Y+CQH++ KV+ + D SKSAK HLFHDETLPSFFRRL+WSPDGSFLLVPAGSYK SP SEP+NT YVFSRK+LSRPALLLPGASKPVVAVRFCP AFSLRG+ ++AFF+LPYR IFAVATLNSLYIYDTESV PIA+ AGLHYAAITDI+WSP GKYLA+SSQDGYC+LVEF DELG PI SE+K ++ + D EATT + GA D++K AE + + E KQ SP ++T KPA+RRITPMAID
Sbjct: 1 MRGGTVQINWHDTKPILSLDFHPPSGTLATGGADFDIKLWLINSDEVQKKVPTASYQNSLSYHGSAVNALRFSPSGDQLASGADGGELIIWKLHSTDAGQTWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNKGSVHQILDAHFHYVQGVAWDPLAKYVASLSSDRTCRIYVKKPQTRTKGIEKMSYICQHVIAKVEPQTTDESKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKFSPASEPVNTAYVFSRKDLSRPALLLPGASKPVVAVRFCPMAFSLRGSNSAAFFRLPYRLIFAVATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSPNGKYLALSSQDGYCTLVEFEKDELGFPISLSEEKKVMGDDNNKPVQKSDEMGIEATTNNSIV--------GA-----------DSRKAEAEAEKI----------EGKQASPSSISTPIPNKPAKRRITPMAID 455
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ALD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531054.1}))
HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 349/488 (71.52%), Postives = 392/488 (80.33%), Query Frame = 0
Match: A0A5J5ALD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531054.1}))
HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 349/488 (71.52%), Postives = 392/488 (80.33%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEF-TPTKKPEDVRMTEATTRKDEI---CRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
MRGGTVQINWHDTKPVLTLDFHP SG+LATGGAD+DIKLWLINSGE + KVPSA++ NSLSYHGSAVN LRFSPSGE+LASGADGGELI+WKLHS+DAGQ+WKVLKTL FHRKDVLDLQWS DGAFLISGSVDNSCIIWD+NKGSVHQIL+AH HYVQGVAWDPLAKYVASLSSDR+ RI VNKP T+ KGIEKM+Y CQH++ KV+ + +D SK+AK HLFHDETLPSFFRRLSWSPDGSFLLVPAGSYK SP SEP+NT YVFSRK+LSRPALLLPGASKPVVAVRFCP AFSLRG+ ++AFF+LPYR IFAVATLNSLYIYDTE V PIA+ AGLHYAA+TDI+WSP GKYLA+SSQDGYC+LVEF DELGSPI S +K +E P +K +D+ + E T+ + R AEAE GK+A SP ++T T KPA+RRITPMAID
Sbjct: 1 MRGGTVQINWHDTKPVLTLDFHPSSGILATGGADYDIKLWLINSGEVQTKVPSASFQNSLSYHGSAVNALRFSPSGEQLASGADGGELIIWKLHSTDAGQTWKVLKTLLFHRKDVLDLQWSADGAFLISGSVDNSCIIWDVNKGSVHQILDAHFHYVQGVAWDPLAKYVASLSSDRTCRIYVNKPQTRTKGIEKMSYACQHVIAKVEPQTIDESKAAKNHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKFSPASEPVNTAYVFSRKDLSRPALLLPGASKPVVAVRFCPMAFSLRGSNSAAFFRLPYRLIFAVATLNSLYIYDTECVPPIAILAGLHYAAVTDIAWSPDGKYLALSSQDGYCTLVEFEKDELGSPISLSGEKKVVGDENDKPVQKMDDMGI-ETTSNHGVVGADSRKAEAEKIEGKEA----------------------------------SPSSISTPTPNKPAKRRITPMAID 453
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LZU2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL06p029214:mrna}))
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 347/496 (69.96%), Postives = 389/496 (78.43%), Query Frame = 0
Match: A0A7N2LZU2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL06p029214:mrna}))
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 347/496 (69.96%), Postives = 389/496 (78.43%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSG--EGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEFTPTKKPEDVRMTEATTRKDEICRDA---EAENGAGKQAI----PAEKSEDNQKLPAETDAV---KQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
M+GGTVQINWHDTKPVLTLDFHP S LATGGAD+DIKLWLINS E EKK P+ATY NSLSYHGSAVN LRFSPSGE+LASGADGGELILWKLH +D GQ+WKV KTLSFHRKDVLDLQWS DGAFLISGSVDNSCIIWD+NKGSVHQIL++H HYVQGVAWDPLAKY ASLSSDR+ RI VNKP TKAK +EK NYVCQH+++K + VD+SKS K HLFHDETLPSFFRRL+WSPDGSFLLVPAGS K+SP S+P+NT YVFSRK+LSRPAL LPGASKPVVAVRFCP FSLRG+ +A FKLPYR IFAVATLNSLY+YDTESV PIA+ AGLHYAAITDI+WSP G+YLA+SSQDGYC+L+EF DELGSP+ SE K + P +KPED+ + + TT D +A N GKQ P +K ED D+V P NE KQ P +T KPA+RRITP+AID
Sbjct: 1 MKGGTVQINWHDTKPVLTLDFHPLSSTLATGGADYDIKLWLINSDSDETEKKGPTATYQNSLSYHGSAVNTLRFSPSGEQLASGADGGELILWKLHPTDTGQTWKVFKTLSFHRKDVLDLQWSGDGAFLISGSVDNSCIIWDVNKGSVHQILDSHFHYVQGVAWDPLAKYAASLSSDRTCRIYVNKPQTKAKVLEKKNYVCQHVISKAEQPSVDDSKSVKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSCKLSPASDPVNTAYVFSRKDLSRPALQLPGASKPVVAVRFCPIGFSLRGSNPAAIFKLPYRLIFAVATLNSLYVYDTESVPPIAILAGLHYAAITDIAWSPDGRYLALSSQDGYCTLLEFEHDELGSPVSLSEYKKVKDEKKNPVQKPEDM-VIDLTTNNSVGAVDGTKRKAGNNEGKQESPNKNPVQKPEDMVIDETTNDSVVTMDSAKPEEGNNEGKQVPPSSASTPVSTKPAKRRITPIAID 495
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4SD15 ((Uncharacterized protein {ECO:0000313|EMBL:ESR45493.1}))
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 343/530 (64.72%), Postives = 406/530 (76.60%), Query Frame = 0
Match: V4SD15 ((Uncharacterized protein {ECO:0000313|EMBL:ESR45493.1}))
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 343/530 (64.72%), Postives = 406/530 (76.60%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKPTKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEFTP----------------------TKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSE-DNQKLPAET-DAVKQPSPTGDTNE-------------QKQESPKLV----------NTATEGKPARRRITPMAID 483
M+GGT+QINWHDTKPVLTLDFHP SGLLATGGAD+DIK+WLINSGE +KK+P+A+Y NSLSYHGSA+N+LRFSP GE+LASGADGGELI+WKLH+++ GQ+WKVLK LSFHRKDVLDLQWSTDGAFL+SGSVDNSCIIWD+NKGSV QIL+AH HYVQGVAWDPL+KYVASLSSDR+ RI N+PTK+KG+EKMNYVCQH++TK D+SKSAK HLFHDETLPSFFRRL+WSPDGSFLLVPAGSYKIS +SE IN+ Y+FSRK+LSRPAL LPGASKPVVAVRFCP AF+LR + ++ FFKLPYR IFA+ATLNSLYIYDTESV PIA+ AGLHYAAITDI+WS +YLA+SSQDGYC+LVEF +DELG PI S +K +P TK+P D R TEA T+ DE + A + I E++E +++K AET D + + + DT E +K E+ K+ +TA + KPA+RRITPMAID
Sbjct: 1 MKGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGEQLASGADGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKEP-DKRKTEAETKDDETAINGSI--AAESRLIEPERNEAESRKAEAETEDGKRTTNDSSDTAESRPMDLDRNEVDNRKIETEKIQGKQAQSASSRSTAIQNKPAKRRITPMAID 527
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RDN0 ((Chromatin assembly factor 1 subunit like {ECO:0000313|EMBL:PSS26651.1}))
HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 338/485 (69.69%), Postives = 389/485 (80.21%), Query Frame = 0
Match: A0A2R6RDN0 ((Chromatin assembly factor 1 subunit like {ECO:0000313|EMBL:PSS26651.1}))
HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 338/485 (69.69%), Postives = 389/485 (80.21%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNE-FTPTKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
MR TVQINWHDTKPVLTLDFHP SG+LATGGADFDIKLWL++ GE +KK P+A+Y NSL+YH SAVN LRFSPSGE LASGADGGEL+LWKLH +DA Q WKVLKTLSFHRKDVLDLQWSTDGAFL+SGSVDNSCIIWD+NKGSVHQIL+AH HYVQGVAWDPL KYVASLSSDR+ RI VNKP KAKG EKMNYVCQH++ K + ++D SKS K HLFHDETLPSFFRRL+WSPDGSFLLVPAGSY+ISP SEP+NT+Y+FSR +L+RPAL+LPGASKPVVAVRFCP AF+LR + ++AFFKLPYR + A+ATLNSLYIYDT+S+QPIA+ AGLHYAA+TDI+WSPTGKYLA+SSQDGYC+LVEF +DELGSPI SE K +E ++P +K E M E T K I + AG++A +AV N+ KQ S V T T+ KPA+RRITPMAID
Sbjct: 1 MRVRTVQINWHDTKPVLTLDFHPPSGILATGGADFDIKLWLVSPGEAQKKNPTASYQNSLAYHSSAVNALRFSPSGEYLASGADGGELVLWKLHLTDAAQVWKVLKTLSFHRKDVLDLQWSTDGAFLVSGSVDNSCIIWDVNKGSVHQILDAHLHYVQGVAWDPLGKYVASLSSDRTCRIYVNKPQNKAKGNEKMNYVCQHVIAKSEPHMIDESKSIKHHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYRISPSSEPVNTSYIFSRIDLTRPALMLPGASKPVVAVRFCPVAFALRASNSAAFFKLPYRLVLALATLNSLYIYDTQSIQPIAILAGLHYAAVTDIAWSPTGKYLALSSQDGYCTLVEFENDELGSPITLSEGKKVVGDESWSPVQKSEGTPMVEVTMNKGII-------SAAGEKA----------------EAVD--------NKGKQPSASPVITPTQNKPAKRRITPMAID 454
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GAK9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129761.1}))
HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0
Identity = 333/485 (68.66%), Postives = 387/485 (79.79%), Query Frame = 0
Match: A0A834GAK9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129761.1}))
HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0
Identity = 333/485 (68.66%), Postives = 387/485 (79.79%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEF-TPTKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
MRGGTVQINWHDTKPVLTLDFHP +G+LATGGADFDIKLWL+ SGE +KK P+A+Y NSL+YHGSAVN LRFSPSGE LASGADGGEL++WKLH++D GQ+WKVLKTLSFHRKDVLDLQWS+DG FL+SGSVDNSCIIWD+++GSVHQIL+AH HYVQGVAWDPLAKY+ASLSSDR+ RI VNKP +KAKG EKMNYVCQH++ K + ++VD SKS K HLFHDETLPSFFRRL+WSPDGSFLLVPAGS +ISP SEP+NT+Y+FSR +L+RPALLLPGASKPVVAVRFCP AF LR + ++ F+LP+R +FAVATLNSLYIYDTE +QPIA+ AGLHYAAITDI+WSP+GKYLA+SSQDGYC+LVEF +DELGSPI SE K +E +KP+D M G+ + I S D+ K E D KQPS T V T + KPA+RRITPMAID
Sbjct: 1 MRGGTVQINWHDTKPVLTLDFHPPTGILATGGADFDIKLWLVTSGEVQKKTPTASYQNSLAYHGSAVNALRFSPSGEHLASGADGGELVIWKLHTTDVGQAWKVLKTLSFHRKDVLDLQWSSDGEFLVSGSVDNSCIIWDVSRGSVHQILDAHQHYVQGVAWDPLAKYIASLSSDRTCRIYVNKPQSKAKGNEKMNYVCQHVIAKAEPQIVDESKSVKHHLFHDETLPSFFRRLAWSPDGSFLLVPAGSCRISPASEPVNTSYIFSRNDLTRPALLLPGASKPVVAVRFCPLAFRLRASNSATSFRLPHRLVFAVATLNSLYIYDTEGIQPIAILAGLHYAAITDIAWSPSGKYLALSSQDGYCTLVEFENDELGSPISLSEGKKLVGDESKVAVQKPDDNEM-----------------EGSQNKGI---LSSDSGKTEIEKDEGKQPSTTP------------VVTPLQNKPAKRRITPMAID 453
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RJP5 ((Chromatin assembly factor 1 subunit like {ECO:0000313|EMBL:PSS30251.1}))
HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 336/485 (69.28%), Postives = 387/485 (79.79%), Query Frame = 0
Match: A0A2R6RJP5 ((Chromatin assembly factor 1 subunit like {ECO:0000313|EMBL:PSS30251.1}))
HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 336/485 (69.28%), Postives = 387/485 (79.79%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEF-TPTKKPEDVRMTEATTRKDEICRDAEAENGAGKQAIPAEKSEDNQKLPAETDAVKQPSPTGDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
MRGGTVQINWHDTKPVLTLDFH SG+LATGGADFDIKLWL++ GE +KK P+A+Y NSL+YHGSAVN LRFSPSGE LASGADGGEL+LWKL+ +DA Q WKV+KTL FHRKDVLDLQWSTDGA+L+SGSVDNSCIIWD+NKGSVHQIL+ H HYVQGVA DPL KYVASLSSDR+ RI +NKP KAKG EKMNYVCQH++ K + +++D SKS K HLFHDETLPSFFRRL+WSPDGSFLLVPAG Y+ISP SEP+NT+YVFSRK+L+RPAL+LPGASKPVVAVRFCP AF+LR ++AFFKLPYR +FA+ATLNSLYIYDTES+QPIA+ AGLHYAAITD++WSP GKYLA+SSQDGYC+LVEF +DELGSPI E K +E +P +K ED + E T K I S DN+K +AV+ NE KQ S V T T+ KPA+RRITPMAID
Sbjct: 1 MRGGTVQINWHDTKPVLTLDFHRPSGILATGGADFDIKLWLVSPGEVQKKNPTASYQNSLAYHGSAVNALRFSPSGEYLASGADGGELVLWKLYLTDAAQLWKVVKTLLFHRKDVLDLQWSTDGAYLVSGSVDNSCIIWDVNKGSVHQILDGHLHYVQGVACDPLGKYVASLSSDRTCRIYINKPQNKAKGNEKMNYVCQHVIAKSEPQMIDESKSVKHHLFHDETLPSFFRRLAWSPDGSFLLVPAGLYRISPASEPVNTSYVFSRKDLTRPALMLPGASKPVVAVRFCPMAFALRALNSAAFFKLPYRLVFALATLNSLYIYDTESIQPIAILAGLHYAAITDVAWSPIGKYLALSSQDGYCTLVEFENDELGSPITFLEGKKAVGDESKSPVQKSEDTPVVEVTMNKGII-------------------SADNEK----AEAVE--------NEGKQPSAIPVITPTQNKPAKRRITPMAID 454
BLAST of XM_017385424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5W7B4 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ09206.1}))
HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 352/553 (63.65%), Postives = 400/553 (72.33%), Query Frame = 0
Match: M5W7B4 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ09206.1}))
HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 352/553 (63.65%), Postives = 400/553 (72.33%), Query Frame = 0
Query: 1 MRGGTVQINWHDTKPVLTLDFHPFSGLLATGGADFDIKLWLINSGEGEKKVPSATYHNSLSYHGSAVNVLRFSPSGEELASGADGGELILWKLHSSDAGQSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDMNKGSVHQILEAHCHYVQGVAWDPLAKYVASLSSDRSLRICVNKP-TKAKGIEKMNYVCQHIVTKVDLEVVDNSKSAKGHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKISPVSEPINTTYVFSRKELSRPALLLPGASKPVVAVRFCPKAFSLRGTTASAFFKLPYRFIFAVATLNSLYIYDTESVQPIAVYAGLHYAAITDISWSPTGKYLAISSQDGYCSLVEFVDDELGSPIYSSEDKNDTSNEF-TPTKKPEDVRMTEATTRKDEICRD----------AEAENGAGK-----QAIPAEKSED-----------------------NQKLPAETDA-----VKQPSPT-------------------------GDTNEQKQESPKLVNTATEGKPARRRITPMAID 483
M+GGTVQINWHDTKPVLTLDFHP SG LATGGADFDIKLWLINS E +KK+P+A+Y NSLSYH SAVNVLRFSPSGE+LASGADGGELI+WKLH+++ +WKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWD+N+GSVHQIL+AH HYVQGVAWDPLA Y ASLSSDR+ RI V K +KAKG EK NYVCQH+++K + ++D+SKSAK HLFHDETLPSFFRRL+WSPDGSFLLVPAGSYKIS E INT YVFSRK+LSRPAL LPGA KPVVAVRFCP FSLRG+ S FFKLP+R +FAVATLNSLYIYDTESV PIA++AGLHYAAITDI+WSP +YL +SSQDGYC+LVEF +DELGSPI SSE+K +E +P +KPED+ + EAT I D EAE K PAEK+ED N+K ET A ++ SP + NE ES + TAT KP +RRITPMAID
Sbjct: 1 MKGGTVQINWHDTKPVLTLDFHPTSGTLATGGADFDIKLWLINSSETQKKLPAASYQNSLSYHSSAVNVLRFSPSGEQLASGADGGELIVWKLHATETSTTWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNRGSVHQILDAHAHYVQGVAWDPLANYAASLSSDRTCRIYVKKAQSKAKGAEKTNYVCQHVISKAEPPLLDDSKSAKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSALETINTAYVFSRKDLSRPALQLPGACKPVVAVRFCPLLFSLRGSNQSGFFKLPHRIVFAVATLNSLYIYDTESVPPIAIFAGLHYAAITDIAWSPNAQYLGLSSQDGYCTLVEFENDELGSPICSSEEKKVMRDENKSPVQKPEDM-VIEATKNDSLIAEDNGRTVERNQQKEAERKEEKVMGEQNKRPAEKAEDMVIESTATDSLVAADNGNSEAEGNRKTELETKAKEVVDLENRSPVENPEDMVVEVTANDSLVAAYNAKSEAERNEGITESQSSMKTATVNKPTKRRITPMAID 552
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZBT3 | E-Value: 0.000e+0, PID: 73.81 | (Putative chromatin assembly factor 1 subunit FAS2... [more] |
| A0A5B7BPB0 | E-Value: 0.000e+0, PID: 72.93 | (Putative chromatin assembly factor 1 subunit FAS2... [more] |
| A0A5B6ZEH2 | E-Value: 0.000e+0, PID: 72.11 | (Putative chromatin assembly factor 1 subunit FAS2... [more] |
| A0A5J5ALD1 | E-Value: 0.000e+0, PID: 71.52 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8531... [more] |
| A0A7N2LZU2 | E-Value: 0.000e+0, PID: 69.96 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| V4SD15 | E-Value: 0.000e+0, PID: 64.72 | (Uncharacterized protein {ECO:0000313|EMBL:ESR4549... [more] |
| A0A2R6RDN0 | E-Value: 0.000e+0, PID: 69.69 | (Chromatin assembly factor 1 subunit like {ECO:000... [more] |
| A0A834GAK9 | E-Value: 0.000e+0, PID: 68.66 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7129... [more] |
| A0A2R6RJP5 | E-Value: 0.000e+0, PID: 69.28 | (Chromatin assembly factor 1 subunit like {ECO:000... [more] |
| M5W7B4 | E-Value: 0.000e+0, PID: 63.65 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ0920... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |