XM_017374047.1

Resource Type: 
Polypeptide
Name: 
XM_017374047.1
Identifier: 
XM_017374047.1-protein
Sequence: 
MTNMEEDEQIATDNVTNSTSTNTNQTTLYSPLQLEAEDEYGDDDGNDDVG
DEEEEEEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEAL
AARKQRIGVFIHISCGSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRR
KNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDP
YLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEE
GNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRL
RPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEI
SIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAH
LGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLE
AIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLAS
LLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYK
DRGSLDSFVDTIYPCVRKSFLEAIQQKDRAKRKLTRSELFERAKVLDNRQ
NDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKS
DESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIID
ISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSF
AAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQ
HQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLA
FLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIP
KLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS
F
Sequence Length: 
951
Sequence Checksum: 
545c5bf299f238a4317ce31c5eef2b8d
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017374047.1, derives from mRNA, XM_017374047.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))

HSP 1 Score: 1102.04 bits (2849), Expect = 0.000e+0
Identity = 565/917 (61.61%), Postives = 708/917 (77.21%), Query Frame = 0
 
Query:   35 EAEDEYGDDDGNDDVGDEEEEEEEDDMSYKMRFEGEMDPLDFIEN-DASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHC 949
            E  +E GD+    + GD + EE E    Y+ +F+GEMDPL F E  DAS +  Y +F+RIE  YE LA++K+     +       P+KKLR ++    +FEEIME M Y   RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA  LL EVI L P L DPY+ L L+Y  + ++K+ +  YM+AAH +PKD SLWKLLV  S+E+G+  QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISRLRP+ VE          L KAT+LY+KCGQ ERAV +LE+ ++ +  +A +S++ LL S+L+E  AY KAL+HIEHAQQVY  G+E PL LTIKAGVC  HLG+LEKAEA F  L+  NA + P +V +VADSL N+  YE ALKYY+MLE   +  +G L+ +IA C   L  R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP   E   +   D  +LWW N  IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R  L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R  PLP+LL +E  H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I  HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N  L  +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQVLKDH 
Sbjct:   49 EKHEEDGDNSEVSEEGDTDGEEAE----YRFQFQGEMDPLSFAEEEDASGLLPYERFERIEQHYEVLASKKRPA---LEACTSELPTKKLRQEEMLGASFEEIMEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISRLRPDNVEV---------LSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHV 947    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))

HSP 1 Score: 1061.6 bits (2744), Expect = 0.000e+0
Identity = 545/895 (60.89%), Postives = 691/895 (77.21%), Query Frame = 0
 
Query:   63 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 951
            YK RF  EMDPL F E+DAS +  Y QF+R+E++YEALAA+K++    +  S    PSKKLR +D  V+    +F+EI+EAM +   ++ R+  K+  RR+G+K KV+  + RKLG+ATLHY++ RYEEA  +L EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH +PKD SLWKLLV  S+E+G+  QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R  P  VE          L+ A +LY+KCG+ ER+VSILE+Y+K +  EA++S+I+LL  M +E  A++KAL+ IE A+Q Y  GK  PL L+IKAG+C  HLG++E+AE IF  LQ+ NA   P IVTEVADSL  L+HYE ALKYYMMLE     + G L+ +IAEC + L +R+++I+Y++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP   E + + + D+P+ WW N  IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A  SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P    R  PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA  TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS N QEA+YNI RAYHHVGLV+LAA +Y++VL   E DYPIPKLPNEN D  E+RKPGYCDL REAAYNLHLIYK SGA DLARQ+LKD+C+ 
Sbjct:   64 YKFRFGAEMDPLAFTEDDASGLQPYQQFERLEHQYEALAAKKRKARALLP-SPSEVPSKKLRLEDSQVDGPGASFDEILEAMNFGMRKRSRKLKKRG-RRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLSEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVSILEDYLKNHPNEADLSVIHLLAVMHMEDNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIDYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLKLSGNRQEAMYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLAENRKPGYCDLRREAAYNLHLIYKKSGAFDLARQILKDYCTL 947    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))

HSP 1 Score: 1058.13 bits (2735), Expect = 0.000e+0
Identity = 546/896 (60.94%), Postives = 691/896 (77.12%), Query Frame = 0
 
Query:   63 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFI-HISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 951
            YK RF  EMDPL F E+DAS +  Y QF+R+E++YEALAA+K++    + H S    PSKKLR +D  V+    +F+EI+EAM +   ++ R+  K+  RR+G+K KV+  + RKLG+ATLHY++ RYEEA  +L EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH +PKD SLWKLLV  S+E+G+  QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R  P  VE          L+ A +LY+KCG+ ER+V ILE+Y+K +  EA++S+I+LL  M +E  A++KAL+ IE A+Q Y  GK  PL L+IKAG+C  HLG++E+AE IF  LQ+ NA   P IVTEVADSL  L+HYE ALKYYMMLE     + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP   E + + + D+P+ WW N  IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A  SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P    R  PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA  TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS   QEALYNI RAYHHVGLV+LAA +Y++VL   E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ+LKD+C+ 
Sbjct:   61 YKFRFGAEMDPLAFTEDDASGLQPYQQFERLEHQYEALAAKKRKARALLPHTS--EVPSKKLRLEDSQVDGPGASFDEILEAMNFGMRKRSRKLKKRG-RRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQILKDYCAL 944    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UFF4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_011100099.1}))

HSP 1 Score: 1050.04 bits (2714), Expect = 0.000e+0
Identity = 528/819 (64.47%), Postives = 654/819 (79.85%), Query Frame = 0
 
Query:  132 TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHC 949
            +FEEIME M Y   RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA  LL EVI L P L DPY+ L L+Y  + ++K+ +  YM+AAH +PKD SLWKLLV  S+E+G+  QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISRLRP+ VE          L KAT+LY+KCGQ ERAV +LE+ ++ +  +A +S++ LL S+L+E  AY KAL+HIEHAQQVY  G+E PL LTIKAGVC  HLG+LEKAEA F  L+  NA + P +V +VADSL N+  YE ALKYY+MLE   +  +G L+ +IA C   L  R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP   E   +   D  +LWW N  IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R  L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R  PLP+LL +E  H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I  HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N  L  +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQVLKDH 
Sbjct:    5 SFEEIMEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISRLRPDNVEV---------LSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHV 812    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X3C7 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_009781369.1}))

HSP 1 Score: 1048.88 bits (2711), Expect = 0.000e+0
Identity = 545/903 (60.35%), Postives = 691/903 (76.52%), Query Frame = 0
 
Query:   63 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFI-HISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHEC-------TYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 951
            YK RF  EMDPL F E+DAS +  Y QF+R+E++YEALAA+K++    + H S    PSKKLR +D  V+    +F+EI+EAM +   ++ R+  K+  RR+G+K KV+  + RKLG+ATLHY++ RYEEA  +L EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH +PKD SLWKLLV  S+E+G+  QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R  P  VE          L+ A +LY+KCG+ ER+V ILE+Y+K +  EA++S+I+LL  M +E  A++KAL+ IE A+Q Y  GK  PL L+IKAG+C  HLG++E+AE IF  LQ+ NA   P IVTEVADSL  L+HYE ALKYYMMLE     + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP   +        + + + D+P+ WW N  IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A  SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P    R  PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA  TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS   QEALYNI RAYHHVGLV+LAA +Y++VL   E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ+LKD+C+ 
Sbjct:   61 YKFRFGAEMDPLAFTEDDASGLQPYQQFERLEHQYEALAAKKRKARALLPHTS--EVPSKKLRLEDSQVDGPGASFDEILEAMNFGMRKRSRKLKKRG-RRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASDLCGSFPESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQILKDYCAL 951    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))

HSP 1 Score: 1043.49 bits (2697), Expect = 0.000e+0
Identity = 536/894 (59.96%), Postives = 689/894 (77.07%), Query Frame = 0
 
Query:   63 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 950
            YK +F  EMDPL F E DA  +  Y QF+R++++YEALAA+K++       S    P+KKLR +D   +    T+EEI+EAM Y   +K R+  K+  RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH SPKD SLWKLLV  S+E+G+ +Q  YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P  VE          LK A + Y+KCG+ E AV ILE+++K + TEA++S+I LL  + +E  A++KAL+ IE A+Q Y  GK+ PL L+IKAG+C  HLG++E A+ IF  +Q  NA   P IVTEVADSL  LK+YE ALKYY+MLE   + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L  P + E + + +  KP  WW N  IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D  + D +FHGF+P+A  SDL+KA RA+KLL+KKE L+E K+AAALAAG  +KSD+SD E P+ V R  PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLS+E+K EL+++GAQ+ YNI DP HG+DCAR IVNQHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I  HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A  +Y++VL  RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLAR +LKD+C+
Sbjct:   70 YKFQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPAS--EVPAKKLRQEDRQEDGPGATYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIDLLAVIHMEDNAHLKALDVIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSTPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSLEKKGELQALGAQVGYNIADPIHGFDCARSIVNQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARLILKDYCT 951    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))

HSP 1 Score: 1043.11 bits (2696), Expect = 0.000e+0
Identity = 538/902 (59.65%), Postives = 695/902 (77.05%), Query Frame = 0
 
Query:   55 EEEEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 950
            E EED+     +F  EMDPL F E DA  +  Y QF+R++++YEALAA+K++       S    P+KKLR +D   +    ++EEI+EAM Y   +K R+  K+  RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH SPKD SLWKLLV  S+E+G+ +Q  YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P  VE          LK A + Y+KCG+ E AV ILE+++K + TEA++S+I+LL  + +E  A++KAL+ IE A+Q Y  GK+ PL L+IKAG+C  HLG++E A+ IF  +Q  NA   P IVTEVADSL  LK+YE ALKYY+MLE   + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L  P + E + + +  KP  WW N  IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q+K + +R+L++S L +R KV+D  + D +FHGF+P+A  SDL+KA RA+KLL+KKE L+E K+AAALAAG  +KSD+SD E P+ V R  PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I  HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A  +Y++VL  RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct:   21 ELEEDN---NXQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPAS--EVPAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQRKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 907    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))

HSP 1 Score: 1042.72 bits (2695), Expect = 0.000e+0
Identity = 535/894 (59.84%), Postives = 689/894 (77.07%), Query Frame = 0
 
Query:   63 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 950
            Y+ +F  EMDPL F E DA  +  Y QF+R++++YEALAA+K++       S    P+KKLR +D   +    ++EEI+EAM Y   +K R+  K+  RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH SPKD SLWKLLV  S+E+G+ +Q  YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P  VE          LK A + Y+KCG+ E AV ILE+++K +  EA++S+I+LL  + +E  A++KAL+ IE A+Q Y  GK+ PL L+IKAG+C  HLG++E A+ IF  +Q  NA   P IVTEVADSL  LK+YE ALKYY+MLE   + + G L+ RIAEC ++L DR+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L  P + E + + +  KP  WW N  IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D  + D +FHGF+P+A  SDL+KA RA+KLL+KKE L+E K+AAALAAG  +KSD+SD E P+ V R  PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I  HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL  NL LS+N QEAL+NI RA HHVGLV+ A  +Y++VL  RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct:   69 YRFQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPAS--EVPAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRDRVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLCNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 950    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZKV3 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_010252329.1}))

HSP 1 Score: 1041.57 bits (2692), Expect = 0.000e+0
Identity = 532/895 (59.44%), Postives = 691/895 (77.21%), Query Frame = 0
 
Query:   57 EEDDMSYKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 950
              ++  Y +RFEGEM+PLDF+E+DA  V  Y QF+R+  EYEALA RK++    +        SKK R++D+   + +EIME M +   R++ RK+KK+GRR+GS+ K++P V RKLG+ATLHY+  RYEEA C+LKEVI L P LPDPY+ LGLVY  + DKKK +  YM+AAH SPKD SLWKLLV  S+E+GN  QA YCLSKAITADP+D+SL+FDRA+L+++LGDY KAAESYEQI  + PE VEA            A K+YQKCGQ ERAVSILE+Y+K + T+ + +++ +L S+ +E  +Y KAL  IE+ Q  Y + KEFPL L ++AG+C  HLGN+E AE +F VL+  +A D+  ++ +VAD+  NL H+E ALKYY MLE    N++G LY +IA+C L L DR+ +I ++YKALP+  D++D RL LASLLLEE K+DEAI++L PP + + + + N  +P+ WW N  +K+KL +IY  +G L+ F+D I   VR++ F+E + QK R +++L+RS LFERAKVL++ Q DNVF GF+P+ASTSDL KA RAKK LQKK A +EEK+AA LAAG++++SD+SD E PQ  R  PLP LL DEE++ LI+DLCK+LA+L++YWEALEII+ +LKLA + LS+E+KEELRS+GAQ+AYN  +P+HG+DCARYIV +HPYS  AWNCYYKVISR++NR+S+H KFL  MR KHKDCVPP +I GHQLTM+SQHQAAA++YLEAYKL PD+PLINLCVG+ALINLALG RLQNKHQC++QG AFL  NL L ENSQE+LYN+ARAY HVGLVTLA+++YEKVL + EKD+PIPKLPNE+    +++KPGYC+L REAAYNLHLIYK SGA+DLARQVLKDHC+
Sbjct:   73 NLEEGEYTLRFEGEMNPLDFVEDDAFGVQPYQQFERL--EYEALAERKRKA---LADRQRDGTSKKSRHEDNLGASIDEIMEVMTFGM-RRKSRKHKKRGRRKGSRNKLSPEVTRKLGDATLHYAFGRYEEAICVLKEVILLAPNLPDPYHTLGLVYNAIGDKKKALNFYMIAAHLSPKDPSLWKLLVSWSIEQGNTGQARYCLSKAITADPEDISLKFDRATLHIQLGDYQKAAESYEQILGVCPENVEAR---------NMAAKMYQKCGQVERAVSILEDYIKDHPTDTDWAVVNVLASIHMETNSYAKALQQIENIQSTYSSEKEFPLHLIVRAGICNVHLGNMENAEILFRVLEMEHADDQNDLIIQVADTYMNLGHHESALKYYFMLEKKTGNENGNLYLKIAQCYLSLKDRVNAINFFYKALPRAEDNIDARLTLASLLLEEGKEDEAITLLSPPKELDSSLDMNSVQPKPWWLNGKVKVKLCRIYHAKGMLEEFIDAISSVVRETLFIETMNQKVRIRKRLSRSILFERAKVLNDHQPDNVFCGFKPIASTSDLLKAARAKKSLQKKAARKEEKKAAILAAGLDWQSDDSDDEFPQALREPPLPKLLRDEEHYRLIVDLCKALATLRRYWEALEIINHTLKLAYNMLSIEKKEELRSLGAQVAYNTRNPTHGYDCARYIVQEHPYSLGAWNCYYKVISRMENRFSRHAKFLRRMRSKHKDCVPPMLISGHQLTMVSQHQAAAREYLEAYKLQPDSPLINLCVGTALINLALGLRLQNKHQCLVQGFAFLHNNLRLCENSQESLYNVARAYQHVGLVTLASSYYEKVLTMHEKDFPIPKLPNEDSCLSDNQKPGYCNLRREAAYNLHLIYKRSGALDLARQVLKDHCT 952    
BLAST of XM_017374047.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))

HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 533/894 (59.62%), Postives = 689/894 (77.07%), Query Frame = 0
 
Query:   63 YKMRFEGEMDPLDFIENDASAVDKYHQFQRIENEYEALAARKQRIGVFIHISCGSNPSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 950
            Y+ +F  EMDPL F E DA  +  Y QF+R++++YEALAA+K++       S    P+KKLR +D   +    ++EEI+EAM Y   +K R+  K+  RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y  + DKK+ M  YMLAAH SPKD SLWKLLV  S+E+G+ +Q  YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P  VE          LK A + Y+KCG+ E AV ILE+++K +  EA++S+I+LL  + +E  A++KAL+ IE A+Q Y  GK+ PL L+IKAG+C  HLG++E A+ IF  +Q  NA   P IVTEVADSL  LK+YE ALKYY+MLE   + + G L+ RIAEC ++L +R+++IEY+ KA+ +L DSVD RL L+S+LLEE KDDEA+S+L  P + E + + +  KP  WW N  IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D  + D +FHGF+P+A  SDL+KA RA+KLL+KKE L+E K+AAALAAG  +KSD+SD E P+ V R  PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I  HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A  +Y++VL  RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct:   64 YRFQFGAEMDPLSFAEEDAFGLQPYQQFERLQHQYEALAAKKRKAVALQPAS--EVPAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFSKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 945    
Match NameStatsDescription
A0A6I9UNW3E-Value: 0.000e+0, PID: 61.61(general transcription factor 3C polypeptide 3 iso... [more]
A0A1J6ICB1E-Value: 0.000e+0, PID: 60.89(Uncharacterized protein {ECO:0000313|EMBL:OIT0268... [more]
A0A1U7X4H4E-Value: 0.000e+0, PID: 60.94(general transcription factor 3C polypeptide 3 iso... [more]
A0A6I9UFF4E-Value: 0.000e+0, PID: 64.47(general transcription factor 3C polypeptide 3 iso... [more]
A0A1U7X3C7E-Value: 0.000e+0, PID: 60.35(general transcription factor 3C polypeptide 3 iso... [more]
A0A2G2V9C0E-Value: 0.000e+0, PID: 59.96(Uncharacterized protein {ECO:0000313|EMBL:PHT2950... [more]
A0A2G3DFP9E-Value: 0.000e+0, PID: 59.65(Uncharacterized protein {ECO:0000313|EMBL:PHU2981... [more]
A0A1U8HFC8E-Value: 0.000e+0, PID: 59.84(general transcription factor 3C polypeptide 3 iso... [more]
A0A1U7ZKV3E-Value: 0.000e+0, PID: 59.44(general transcription factor 3C polypeptide 3 iso... [more]
A0A2G3AIW9E-Value: 0.000e+0, PID: 59.62(Uncharacterized protein {ECO:0000313|EMBL:PHT9418... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content