Resource Type:
Polypeptide
Name:
XM_017374049.1
Identifier:
XM_017374049.1-protein
Sequence:
MNMKLSLLESVNLSPLLSLLERIGVFIHISCGSNPSKKLRNDDDHVETFE
EIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNER
YEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSP
KDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVEL
GDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAV
SILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGK
EFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLA
NLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKA
LPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPEL
WWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKSFLEAIQQKDRAKRKL
TRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALR
EEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCK
SLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSH
GWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDC
VPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLAL
GHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAAT
FYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKS
SGAVDLARQVLKDHCSF
Sequence Length:
867
Sequence Checksum:
56150de8c3026380415a93c232a17744
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374049.1, derives from mRNA, XM_017374049.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))
HSP 1 Score: 1057.74 bits (2734), Expect = 0.000e+0
Identity = 535/838 (63.84%), Postives = 665/838 (79.36%), Query Frame = 0
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))
HSP 1 Score: 1057.74 bits (2734), Expect = 0.000e+0
Identity = 535/838 (63.84%), Postives = 665/838 (79.36%), Query Frame = 0
Query: 30 SCGSN-PSKKLRNDDDHVETFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHC 865
+C S P+KKLR ++ +FEEIME M Y RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA LL EVI L P L DPY+ L L+Y + ++K+ + YM+AAH +PKD SLWKLLV S+E+G+ QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISRLRP+ VE L KAT+LY+KCGQ ERAV +LE+ ++ + +A +S++ LL S+L+E AY KAL+HIEHAQQVY G+E PL LTIKAGVC HLG+LEKAEA F L+ NA + P +V +VADSL N+ YE ALKYY+MLE + +G L+ +IA C L R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP E + D +LWW N IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R PLP+LL +E H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N L +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQVLKDH
Sbjct: 121 ACTSELPTKKLRQEEMLGASFEEIMEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISRLRPDNVEV---------LSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHV 947
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UFF4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_011100099.1}))
HSP 1 Score: 1048.88 bits (2711), Expect = 0.000e+0
Identity = 528/819 (64.47%), Postives = 654/819 (79.85%), Query Frame = 0
Match: A0A6I9UFF4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_011100099.1}))
HSP 1 Score: 1048.88 bits (2711), Expect = 0.000e+0
Identity = 528/819 (64.47%), Postives = 654/819 (79.85%), Query Frame = 0
Query: 48 TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHC 865
+FEEIME M Y RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA LL EVI L P L DPY+ L L+Y + ++K+ + YM+AAH +PKD SLWKLLV S+E+G+ QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISRLRP+ VE L KAT+LY+KCGQ ERAV +LE+ ++ + +A +S++ LL S+L+E AY KAL+HIEHAQQVY G+E PL LTIKAGVC HLG+LEKAEA F L+ NA + P +V +VADSL N+ YE ALKYY+MLE + +G L+ +IA C L R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP E + D +LWW N IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R PLP+LL +E H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N L +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQVLKDH
Sbjct: 5 SFEEIMEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISRLRPDNVEV---------LSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHV 812
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))
HSP 1 Score: 1010.75 bits (2612), Expect = 0.000e+0
Identity = 518/839 (61.74%), Postives = 654/839 (77.95%), Query Frame = 0
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))
HSP 1 Score: 1010.75 bits (2612), Expect = 0.000e+0
Identity = 518/839 (61.74%), Postives = 654/839 (77.95%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 867
PSKKLR +D V+ +F+EI+EAM + ++ R+ K+ RR+G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+VSILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q Y GK PL L+IKAG+C HLG++E+AE IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++I+Y++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP E + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS N QEA+YNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D E+RKPGYCDL REAAYNLHLIYK SGA DLARQ+LKD+C+
Sbjct: 119 PSKKLRLEDSQVDGPGASFDEILEAMNFGMRKRSRKLKKRG-RRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLSEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVSILEDYLKNHPNEADLSVIHLLAVMHMEDNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIDYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLKLSGNRQEAMYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLAENRKPGYCDLRREAAYNLHLIYKKSGAFDLARQILKDYCTL 947
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G8R8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7125049.1}))
HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0
Identity = 508/769 (66.06%), Postives = 618/769 (80.36%), Query Frame = 0
Match: A0A834G8R8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7125049.1}))
HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0
Identity = 508/769 (66.06%), Postives = 618/769 (80.36%), Query Frame = 0
Query: 100 RYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 867
R EA C LKEVIR+ P LPDPY+ LG++Y ++ DKKK + YMLAAH +PKD SLWKLLV S+E+GN QA YCLSKAITADP D+SLRF RASLYVELG+Y KAAESYEQISRL PE +EA LK AT LYQKCGQ+ER+++ILE+Y+K + ++A++ ++ LL S + + KAL HIEHA +VYC+GKE PL L+I+AG+C HLG+ EKAE+IF VLQR N + P + EVADSL L HY+ ALKYYMMLE IG++ G L+ RIA+C L + DR R+IEY + AL + DSVD RL LASLLL+E K DEAIS+L P + N DK + WW N IKL+LS+IYK +G ++FVD I+P VR+S FLE IQQK RAK+ L +S L ER KVLD + +VF GFRP+ASTSDL+KA+RAKKLLQKK L+E K+AAA+AAG+++KSD SD + PQ R PLPNLL DEE+H LIIDLCKSLASL++YWEA+E+I+++LKLA +TLSVE+ EELRS+GAQIAYNI DPSHGWD AR++VNQ+PYSFAAWNCYYKV+SRL+NRYSKH K LH MRVKHKD +PP II GHQL+MISQHQAAA++YLEAYKLMPD+PL+NLCVG+ALINLALG RLQNKH+C++QGLAFL+ NL L E+SQEALYNIARAYHH+GLVTLAA++YEKVLAI EKD+PIPKLPNEN G++++ YCDLGREAAYNLHLIYK+SGA+DLARQVLKDHC+
Sbjct: 19 RNHEAICALKEVIRVAPNLPDPYHTLGIIYSEIGDKKKALNFYMLAAHLTPKDSSLWKLLVPWSIEQGNAGQARYCLSKAITADPADMSLRFSRASLYVELGEYQKAAESYEQISRLCPENLEA---------LKTATMLYQKCGQKERSITILEDYLKSHPSDADLGVVDLLASTCMNNSEHTKALQHIEHAHRVYCSGKELPLYLSIRAGICYVHLGDDEKAESIFSVLQRENVYEHPHLAREVADSLMALGHYKYALKYYMMLEGIGED--GGLHLRIAQCYLSVSDRGRAIEYLHTALRVMEDSVDARLTLASLLLDEDKQDEAISVLSPCKSTDSKLGLNSDKTKPWWLNGKIKLELSRIYKTKGMTEAFVDAIFPSVRESLFLETIQQKVRAKKGLPKSVLSERVKVLDAQHTGDVFQGFRPVASTSDLSKASRAKKLLQKKAMLKEAKKAAAMAAGLDWKSDNSDEDSPQAMRDPPLPNLLKDEEHHHLIIDLCKSLASLKRYWEAIEVINLTLKLASNTLSVEKGEELRSLGAQIAYNITDPSHGWDYARHVVNQNPYSFAAWNCYYKVVSRLENRYSKHNKLLHGMRVKHKDSIPPIIISGHQLSMISQHQAAAREYLEAYKLMPDSPLVNLCVGTALINLALGLRLQNKHRCLLQGLAFLYNNLRLCESSQEALYNIARAYHHLGLVTLAASYYEKVLAIHEKDFPIPKLPNENPVGMDNQNKNYCDLGREAAYNLHLIYKTSGALDLARQVLKDHCTL 776
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))
HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0
Identity = 518/839 (61.74%), Postives = 653/839 (77.83%), Query Frame = 0
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))
HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0
Identity = 518/839 (61.74%), Postives = 653/839 (77.83%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 867
PSKKLR +D V+ +F+EI+EAM + ++ R+ K+ RR+G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+V ILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q Y GK PL L+IKAG+C HLG++E+AE IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP E + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS QEALYNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ+LKD+C+
Sbjct: 116 PSKKLRLEDSQVDGPGASFDEILEAMNFGMRKRSRKLKKRG-RRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQILKDYCAL 944
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))
HSP 1 Score: 1002.66 bits (2591), Expect = 0.000e+0
Identity = 512/838 (61.10%), Postives = 658/838 (78.52%), Query Frame = 0
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))
HSP 1 Score: 1002.66 bits (2591), Expect = 0.000e+0
Identity = 512/838 (61.10%), Postives = 658/838 (78.52%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 866
P+KKLR +D + ++EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + TEA++S+I+LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q+K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct: 80 PAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQRKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 907
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))
HSP 1 Score: 999.579 bits (2583), Expect = 0.000e+0
Identity = 512/838 (61.10%), Postives = 655/838 (78.16%), Query Frame = 0
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))
HSP 1 Score: 999.579 bits (2583), Expect = 0.000e+0
Identity = 512/838 (61.10%), Postives = 655/838 (78.16%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 866
P+KKLR +D + ++EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + EA++S+I+LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L DR+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct: 123 PAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRDRVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLCNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 950
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))
HSP 1 Score: 998.038 bits (2579), Expect = 0.000e+0
Identity = 512/838 (61.10%), Postives = 655/838 (78.16%), Query Frame = 0
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))
HSP 1 Score: 998.038 bits (2579), Expect = 0.000e+0
Identity = 512/838 (61.10%), Postives = 655/838 (78.16%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 866
P+KKLR +D + T+EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + TEA++S+I LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLS+E+K EL+++GAQ+ YNI DP HG+DCAR IVNQHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLAR +LKD+C+
Sbjct: 124 PAKKLRQEDRQEDGPGATYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIDLLAVIHMEDNAHLKALDVIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSTPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSLEKKGELQALGAQVGYNIADPIHGFDCARSIVNQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARLILKDYCT 951
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))
HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 510/838 (60.86%), Postives = 655/838 (78.16%), Query Frame = 0
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))
HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 510/838 (60.86%), Postives = 655/838 (78.16%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 866
P+KKLR +D + ++EEI+EAM Y +K R+ K+ RR+GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + EA++S+I+LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+ KA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct: 118 PAKKLRQEDRQEDGPGASYEEILEAMNYGMKKKSRKLKKRG-RRKGSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFSKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 945
BLAST of XM_017374049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X3C7 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_009781369.1}))
HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 517/846 (61.11%), Postives = 653/846 (77.19%), Query Frame = 0
Match: A0A1U7X3C7 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_009781369.1}))
HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 517/846 (61.11%), Postives = 653/846 (77.19%), Query Frame = 0
Query: 35 PSKKLRNDDDHVE----TFEEIMEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHEC-------TYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 867
PSKKLR +D V+ +F+EI+EAM + ++ R+ K+ RR+G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+V ILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q Y GK PL L+IKAG+C HLG++E+AE IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP + + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS QEALYNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ+LKD+C+
Sbjct: 116 PSKKLRLEDSQVDGPGASFDEILEAMNFGMRKRSRKLKKRG-RRKGTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASDLCGSFPESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQILKDYCAL 951
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9UNW3 | E-Value: 0.000e+0, PID: 63.84 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A6I9UFF4 | E-Value: 0.000e+0, PID: 64.47 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A1J6ICB1 | E-Value: 0.000e+0, PID: 61.74 | (Uncharacterized protein {ECO:0000313|EMBL:OIT0268... [more] |
| A0A834G8R8 | E-Value: 0.000e+0, PID: 66.06 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7125... [more] |
| A0A1U7X4H4 | E-Value: 0.000e+0, PID: 61.74 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A2G3DFP9 | E-Value: 0.000e+0, PID: 61.10 | (Uncharacterized protein {ECO:0000313|EMBL:PHU2981... [more] |
| A0A1U8HFC8 | E-Value: 0.000e+0, PID: 61.10 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A2G2V9C0 | E-Value: 0.000e+0, PID: 61.10 | (Uncharacterized protein {ECO:0000313|EMBL:PHT2950... [more] |
| A0A2G3AIW9 | E-Value: 0.000e+0, PID: 60.86 | (Uncharacterized protein {ECO:0000313|EMBL:PHT9418... [more] |
| A0A1U7X3C7 | E-Value: 0.000e+0, PID: 61.11 | (general transcription factor 3C polypeptide 3 iso... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |