Resource Type:
Polypeptide
Name:
XM_017374050.1
Identifier:
XM_017374050.1-protein
Sequence:
MEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYE
EARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKD
GSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGD
YLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSI
LEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEF
PLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANL
KHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALP
KLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWW
TNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKSFLEAIQQKDRAKRKLTR
SELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREE
KRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSL
ASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGW
DCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVP
PYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGH
RLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFY
EKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSG
AVDLARQVLKDHCSF
Sequence Length:
815
Sequence Checksum:
cfd178049f0e2a5a9f4d3e376828bee9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374050.1, derives from mRNA, XM_017374050.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UFF4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_011100099.1}))
HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 524/814 (64.37%), Postives = 649/814 (79.73%), Query Frame = 0
Match: A0A6I9UFF4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_011100099.1}))
HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 524/814 (64.37%), Postives = 649/814 (79.73%), Query Frame = 0
Query: 1 MEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHC 813
ME M Y RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA LL EVI L P L DPY+ L L+Y + ++K+ + YM+AAH +PKD SLWKLLV S+E+G+ QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISRLRP+ VE L KAT+LY+KCGQ ERAV +LE+ ++ + +A +S++ LL S+L+E AY KAL+HIEHAQQVY G+E PL LTIKAGVC HLG+LEKAEA F L+ NA + P +V +VADSL N+ YE ALKYY+MLE + +G L+ +IA C L R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP E + D +LWW N IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R PLP+LL +E H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N L +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQVLKDH
Sbjct: 10 MEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISRLRPDNVEV---------LSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHV 812
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))
HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 524/814 (64.37%), Postives = 649/814 (79.73%), Query Frame = 0
Match: A0A6I9UNW3 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_011100078.1, ECO:0000313|RefSeq:XP_011100087.1}))
HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 524/814 (64.37%), Postives = 649/814 (79.73%), Query Frame = 0
Query: 1 MEAMAYNSGRKRRRKNKKKGRRRGSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHC 813
ME M Y RK+ RK+K++GRR+GSKKK NP V RKLG+ATLHY++ R+EEA LL EVI L P L DPY+ L L+Y + ++K+ + YM+AAH +PKD SLWKLLV S+E+G+ QA YCL+KAI ADP+D+ LRF RASLY+ELG+Y KAA+SYEQISRLRP+ VE L KAT+LY+KCGQ ERAV +LE+ ++ + +A +S++ LL S+L+E AY KAL+HIEHAQQVY G+E PL LTIKAGVC HLG+LEKAEA F L+ NA + P +V +VADSL N+ YE ALKYY+MLE + +G L+ +IA C L R ++IEYYYKA+ KLNDSVD RL L+SLLLEE +DDEAIS+L PP E + D +LWW N IKLKLSQIYK +GS +++ D ++P + ++ F+E +QQK +A+++L+R L ER KVLD+ Q DNVFHGFRP+AS++DL+KA+RAK+LLQKK A+RE KRAAALAAG+++KSD+SD E PQV R PLP+LL +E H +I+DLCKSL+SL++YW+ALEII++SLKL C+TLSV+RKEELR++GAQIAYNI DP+HGWDC RYIV++HPYSF+AWNCYYK I R +NR +KH KFLH+MRVKHKD VPP +I HQ TMISQHQAAA++YLEA+KLMPDNP INLC G+ALINLALGHRLQNKHQ ++QGLAFL+ N L +SQEALYNIARAYHHVGLV+LAAT+YEKVLAIREKDYPIP LPNENQD V+ +KPGYCDL REAAYNLHLIYK SGA+DLARQVLKDH
Sbjct: 145 MEIMNYGM-RKKSRKSKQRGRRKGSKKKANPEVTRKLGDATLHYAHGRFEEAIGLLNEVILLAPNLSDPYHTLALIYTAMNEEKRALNFYMIAAHLTPKDASLWKLLVTRSIEQGDKRQANYCLNKAIIADPEDIGLRFHRASLYIELGEYKKAADSYEQISRLRPDNVEV---------LSKATQLYRKCGQHERAVCMLEDNLRNHVNDANLSVVDLLASILMEINAYAKALDHIEHAQQVYSTGQEIPLCLTIKAGVCHVHLGHLEKAEAHFNALKPENASNHPDLVIDVADSLVNVGQYESALKYYVMLEEDANKYNGYLHLKIARCYASLTKRAQAIEYYYKAVEKLNDSVDARLTLSSLLLEEDRDDEAISMLSPPLASEAALDTESDMSKLWWRNGKIKLKLSQIYKAKGSFEAYADVLFPIIHETLFIETVQQKVKARKRLSRGVLSERVKVLDDHQTDNVFHGFRPVASSADLSKASRAKRLLQKKAAVREAKRAAALAAGIDWKSDDSDDESPQVFREPPLPDLLKEEGNHDMIVDLCKSLSSLRRYWDALEIINLSLKLECNTLSVQRKEELRTLGAQIAYNISDPAHGWDCVRYIVSRHPYSFSAWNCYYKGILR-NNRIAKHNKFLHNMRVKHKDSVPPILISAHQFTMISQHQAAAREYLEAHKLMPDNPFINLCAGTALINLALGHRLQNKHQTLLQGLAFLYNNSRLCGDSQEALYNIARAYHHVGLVSLAATYYEKVLAIREKDYPIPVLPNENQDHVDDKKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHV 947
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G8R8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7125049.1}))
HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 508/769 (66.06%), Postives = 618/769 (80.36%), Query Frame = 0
Match: A0A834G8R8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7125049.1}))
HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 508/769 (66.06%), Postives = 618/769 (80.36%), Query Frame = 0
Query: 48 RYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 815
R EA C LKEVIR+ P LPDPY+ LG++Y ++ DKKK + YMLAAH +PKD SLWKLLV S+E+GN QA YCLSKAITADP D+SLRF RASLYVELG+Y KAAESYEQISRL PE +EA LK AT LYQKCGQ+ER+++ILE+Y+K + ++A++ ++ LL S + + KAL HIEHA +VYC+GKE PL L+I+AG+C HLG+ EKAE+IF VLQR N + P + EVADSL L HY+ ALKYYMMLE IG++ G L+ RIA+C L + DR R+IEY + AL + DSVD RL LASLLL+E K DEAIS+L P + N DK + WW N IKL+LS+IYK +G ++FVD I+P VR+S FLE IQQK RAK+ L +S L ER KVLD + +VF GFRP+ASTSDL+KA+RAKKLLQKK L+E K+AAA+AAG+++KSD SD + PQ R PLPNLL DEE+H LIIDLCKSLASL++YWEA+E+I+++LKLA +TLSVE+ EELRS+GAQIAYNI DPSHGWD AR++VNQ+PYSFAAWNCYYKV+SRL+NRYSKH K LH MRVKHKD +PP II GHQL+MISQHQAAA++YLEAYKLMPD+PL+NLCVG+ALINLALG RLQNKH+C++QGLAFL+ NL L E+SQEALYNIARAYHH+GLVTLAA++YEKVLAI EKD+PIPKLPNEN G++++ YCDLGREAAYNLHLIYK+SGA+DLARQVLKDHC+
Sbjct: 19 RNHEAICALKEVIRVAPNLPDPYHTLGIIYSEIGDKKKALNFYMLAAHLTPKDSSLWKLLVPWSIEQGNAGQARYCLSKAITADPADMSLRFSRASLYVELGEYQKAAESYEQISRLCPENLEA---------LKTATMLYQKCGQKERSITILEDYLKSHPSDADLGVVDLLASTCMNNSEHTKALQHIEHAHRVYCSGKELPLYLSIRAGICYVHLGDDEKAESIFSVLQRENVYEHPHLAREVADSLMALGHYKYALKYYMMLEGIGED--GGLHLRIAQCYLSVSDRGRAIEYLHTALRVMEDSVDARLTLASLLLDEDKQDEAISVLSPCKSTDSKLGLNSDKTKPWWLNGKIKLELSRIYKTKGMTEAFVDAIFPSVRESLFLETIQQKVRAKKGLPKSVLSERVKVLDAQHTGDVFQGFRPVASTSDLSKASRAKKLLQKKAMLKEAKKAAAMAAGLDWKSDNSDEDSPQAMRDPPLPNLLKDEEHHHLIIDLCKSLASLKRYWEAIEVINLTLKLASNTLSVEKGEELRSLGAQIAYNITDPSHGWDYARHVVNQNPYSFAAWNCYYKVVSRLENRYSKHNKLLHGMRVKHKDSIPPIIISGHQLSMISQHQAAAREYLEAYKLMPDSPLVNLCVGTALINLALGLRLQNKHRCLLQGLAFLYNNLRLCESSQEALYNIARAYHHLGLVTLAASYYEKVLAIHEKDFPIPKLPNENPVGMDNQNKNYCDLGREAAYNLHLIYKTSGALDLARQVLKDHCTL 776
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))
HSP 1 Score: 995.342 bits (2572), Expect = 0.000e+0
Identity = 500/794 (62.97%), Postives = 625/794 (78.72%), Query Frame = 0
Match: A0A1J6ICB1 ((Uncharacterized protein {ECO:0000313|EMBL:OIT02685.1}))
HSP 1 Score: 995.342 bits (2572), Expect = 0.000e+0
Identity = 500/794 (62.97%), Postives = 625/794 (78.72%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 815
G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+VSILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q Y GK PL L+IKAG+C HLG++E+AE IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++I+Y++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP E + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS N QEA+YNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D E+RKPGYCDL REAAYNLHLIYK SGA DLARQ+LKD+C+
Sbjct: 163 GTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLSEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVSILEDYLKNHPNEADLSVIHLLAVMHMEDNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIDYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLKLSGNRQEAMYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLAENRKPGYCDLRREAAYNLHLIYKKSGAFDLARQILKDYCTL 947
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))
HSP 1 Score: 992.26 bits (2564), Expect = 0.000e+0
Identity = 500/794 (62.97%), Postives = 624/794 (78.59%), Query Frame = 0
Match: A0A1U7X4H4 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_009781370.1}))
HSP 1 Score: 992.26 bits (2564), Expect = 0.000e+0
Identity = 500/794 (62.97%), Postives = 624/794 (78.59%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPP-QVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCSF 815
G+K KV+ + RKLG+ATLHY++ RYEEA +L EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH +PKD SLWKLLV S+E+G+ QA YCLSKAITADP D+SLR+ RAS+Y+ELGDY KAAESYEQI+R P VE L+ A +LY+KCG+ ER+V ILE+Y+K + EA++S+I+LL M +E A++KAL+ IE A+Q Y GK PL L+IKAG+C HLG++E+AE IF LQ+ NA P IVTEVADSL L+HYE ALKYYMMLE + G L+ +IAEC + L +R+++IEY++KA+ +L DSVD RL L+S+LLEE KDDEA+ +L PP E + + + D+P+ WW N IKLKL QIY+ +GSL++ VD I+P +R++ FLE++QQK + +++L++S LF+R KV+D+ Q D VFHGFRP+A SDL+KA RA+KLLQKKE L+E K+AAALAAG ++KSD+SD E P R PLP+LL DEE+ CLIIDLCK L SLQ+YW+ALEII++ LKLA TLSVE+K EL+++GAQ+ YNI DP+ G+DCARYIV+QHPYSFAAWNCYYKVISRLD RYSKH KFLH+MR KHKDCVPP II GHQ T ISQHQAAA++YLEAYKLM DN LINLC G+ALIN+ALG RL NKHQC++QG+AFL+ NL LS QEALYNI RAYHHVGLV+LAA +Y++VL E DYPIPKLPNEN D VE+RKPGYC+L REAAYNLHLIYK SGA DLARQ+LKD+C+
Sbjct: 160 GTKNKVSSELKRKLGDATLHYAHGRYEEAIRVLNEVIRLSPNLPDPYHTLGLIYNAIGDKKRAMDFYMLAAHLAPKDASLWKLLVDWSIEQGDRGQARYCLSKAITADPDDISLRYHRASIYIELGDYQKAAESYEQIARRCPNDVEV---------LRTAAQLYRKCGEAERSVGILEDYLKNHPYEADLSVIHLLAVMHMENNAHLKALDLIECAKQRYFTGKWMPLNLSIKAGICHLHLGHMEEAEIIFSALQQENASQHPDIVTEVADSLMTLEHYESALKYYMMLEGDDVKNKGYLHLKIAECYVFLRERVQAIEYFHKAVNELEDSVDARLTLSSILLEEGKDDEAVFVLSPPKASESSVDSSSDEPKSWWLNSKIKLKLCQIYRAKGSLEACVDVIFPLIRETLFLESVQQKVKVRKRLSKSVLFQRIKVVDDHQTDTVFHGFRPLALASDLSKAARARKLLQKKEMLKEAKKAAALAAGADWKSDDSDSESPGHAYREPPLPDLLKDEEHLCLIIDLCKVLISLQRYWDALEIINLCLKLASGTLSVEKKGELQALGAQVGYNIADPTRGFDCARYIVSQHPYSFAAWNCYYKVISRLDIRYSKHNKFLHNMRTKHKDCVPPIIIAGHQFTTISQHQAAAREYLEAYKLMTDNQLINLCAGTALINVALGFRLHNKHQCILQGMAFLYNNLRLSGKRQEALYNIGRAYHHVGLVSLAAIYYQRVLDTHENDYPIPKLPNENPDLVENRKPGYCNLRREAAYNLHLIYKKSGAFDLARQILKDYCAL 944
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))
HSP 1 Score: 991.104 bits (2561), Expect = 0.000e+0
Identity = 494/793 (62.30%), Postives = 630/793 (79.45%), Query Frame = 0
Match: A0A2G3DFP9 ((Uncharacterized protein {ECO:0000313|EMBL:PHU29818.1}))
HSP 1 Score: 991.104 bits (2561), Expect = 0.000e+0
Identity = 494/793 (62.30%), Postives = 630/793 (79.45%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 814
GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + TEA++S+I+LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q+K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct: 124 GSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQRKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 907
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 494/793 (62.30%), Postives = 627/793 (79.07%), Query Frame = 0
Match: A0A1U8HFC8 ((general transcription factor 3C polypeptide 3 isoform X1 {ECO:0000313|RefSeq:XP_016582075.1}))
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 494/793 (62.30%), Postives = 627/793 (79.07%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 814
GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + EA++S+I+LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L DR+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct: 167 GSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRDRVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLCNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 950
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZKV3 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_010252329.1}))
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 487/792 (61.49%), Postives = 624/792 (78.79%), Query Frame = 0
Match: A0A1U7ZKV3 ((general transcription factor 3C polypeptide 3 isoform X2 {ECO:0000313|RefSeq:XP_010252329.1}))
HSP 1 Score: 986.867 bits (2550), Expect = 0.000e+0
Identity = 487/792 (61.49%), Postives = 624/792 (78.79%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQVTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 814
GS+ K++P V RKLG+ATLHY+ RYEEA C+LKEVI L P LPDPY+ LGLVY + DKKK + YM+AAH SPKD SLWKLLV S+E+GN QA YCLSKAITADP+D+SL+FDRA+L+++LGDY KAAESYEQI + PE VEA A K+YQKCGQ ERAVSILE+Y+K + T+ + +++ +L S+ +E +Y KAL IE+ Q Y + KEFPL L ++AG+C HLGN+E AE +F VL+ +A D+ ++ +VAD+ NL H+E ALKYY MLE N++G LY +IA+C L L DR+ +I ++YKALP+ D++D RL LASLLLEE K+DEAI++L PP + + + + N +P+ WW N +K+KL +IY +G L+ F+D I VR++ F+E + QK R +++L+RS LFERAKVL++ Q DNVF GF+P+ASTSDL KA RAKK LQKK A +EEK+AA LAAG++++SD+SD E PQ R PLP LL DEE++ LI+DLCK+LA+L++YWEALEII+ +LKLA + LS+E+KEELRS+GAQ+AYN +P+HG+DCARYIV +HPYS AWNCYYKVISR++NR+S+H KFL MR KHKDCVPP +I GHQLTM+SQHQAAA++YLEAYKL PD+PLINLCVG+ALINLALG RLQNKHQC++QG AFL NL L ENSQE+LYN+ARAY HVGLVTLA+++YEKVL + EKD+PIPKLPNE+ +++KPGYC+L REAAYNLHLIYK SGA+DLARQVLKDHC+
Sbjct: 170 GSRNKLSPEVTRKLGDATLHYAFGRYEEAICVLKEVILLAPNLPDPYHTLGLVYNAIGDKKKALNFYMIAAHLSPKDPSLWKLLVSWSIEQGNTGQARYCLSKAITADPEDISLKFDRATLHIQLGDYQKAAESYEQILGVCPENVEAR---------NMAAKMYQKCGQVERAVSILEDYIKDHPTDTDWAVVNVLASIHMETNSYAKALQQIENIQSTYSSEKEFPLHLIVRAGICNVHLGNMENAEILFRVLEMEHADDQNDLIIQVADTYMNLGHHESALKYYFMLEKKTGNENGNLYLKIAQCYLSLKDRVNAINFFYKALPRAEDNIDARLTLASLLLEEGKEDEAITLLSPPKELDSSLDMNSVQPKPWWLNGKVKVKLCRIYHAKGMLEEFIDAISSVVRETLFIETMNQKVRIRKRLSRSILFERAKVLNDHQPDNVFCGFKPIASTSDLLKAARAKKSLQKKAARKEEKKAAILAAGLDWQSDDSDDEFPQALREPPLPKLLRDEEHYRLIVDLCKALATLRRYWEALEIINHTLKLAYNMLSIEKKEELRSLGAQVAYNTRNPTHGYDCARYIVQEHPYSLGAWNCYYKVISRMENRFSRHAKFLRRMRSKHKDCVPPMLISGHQLTMVSQHQAAAREYLEAYKLQPDSPLINLCVGTALINLALGLRLQNKHQCLVQGFAFLHNNLRLCENSQESLYNVARAYQHVGLVTLASSYYEKVLTMHEKDFPIPKLPNEDSCLSDNQKPGYCNLRREAAYNLHLIYKRSGALDLARQVLKDHCT 952
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))
HSP 1 Score: 985.326 bits (2546), Expect = 0.000e+0
Identity = 493/793 (62.17%), Postives = 627/793 (79.07%), Query Frame = 0
Match: A0A2G2V9C0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT29508.1}))
HSP 1 Score: 985.326 bits (2546), Expect = 0.000e+0
Identity = 493/793 (62.17%), Postives = 627/793 (79.07%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 814
GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + TEA++S+I LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+YKA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLS+E+K EL+++GAQ+ YNI DP HG+DCAR IVNQHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLAR +LKD+C+
Sbjct: 168 GSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPTEADLSVIDLLAVIHMEDNAHLKALDVIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFYKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSTPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSLEKKGELQALGAQVGYNIADPIHGFDCARSIVNQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARLILKDYCT 951
BLAST of XM_017374050.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))
HSP 1 Score: 984.171 bits (2543), Expect = 0.000e+0
Identity = 492/793 (62.04%), Postives = 627/793 (79.07%), Query Frame = 0
Match: A0A2G3AIW9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT94181.1}))
HSP 1 Score: 984.171 bits (2543), Expect = 0.000e+0
Identity = 492/793 (62.04%), Postives = 627/793 (79.07%), Query Frame = 0
Query: 24 GSKKKVNPVVARKLGEATLHYSNERYEEARCLLKEVIRLDPYLPDPYYKLGLVYEQLKDKKKQMGCYMLAAHSSPKDGSLWKLLVLLSVEEGNNEQAMYCLSKAITADPQDLSLRFDRASLYVELGDYLKAAESYEQISRLRPELVEAELRPELVEALKKATKLYQKCGQRERAVSILEEYVKRNQTEAEISIIYLLVSMLIEGRAYIKALNHIEHAQQVYCAGKEFPLPLTIKAGVCQAHLGNLEKAEAIFCVLQRGNACDRPQIVTEVADSLANLKHYELALKYYMMLEAIGDNDSGVLYSRIAECNLHLGDRLRSIEYYYKALPKLNDSVDTRLKLASLLLEESKDDEAISILCPPTDHECTYEHNLDKPELWWTNFTIKLKLSQIYKDRGSLDSFVDTIYPCVRKS-FLEAIQQKDRAKRKLTRSELFERAKVLDNRQNDNVFHGFRPMASTSDLTKATRAKKLLQKKEALREEKRAAALAAGVEYKSDESDVEPPQ-VTRRRPLPNLLVDEEYHCLIIDLCKSLASLQKYWEALEIIDISLKLACSTLSVERKEELRSIGAQIAYNIGDPSHGWDCARYIVNQHPYSFAAWNCYYKVISRLDNRYSKHGKFLHSMRVKHKDCVPPYIIFGHQLTMISQHQAAAKDYLEAYKLMPDNPLINLCVGSALINLALGHRLQNKHQCVMQGLAFLFKNLLLSENSQEALYNIARAYHHVGLVTLAATFYEKVLAIREKDYPIPKLPNENQDGVESRKPGYCDLGREAAYNLHLIYKSSGAVDLARQVLKDHCS 814
GSK KV+P + RKLG+ATLHY++ RYEEA+ +L+EVIRL P LPDPY+ LGL+Y + DKK+ M YMLAAH SPKD SLWKLLV S+E+G+ +Q YCLSKAITADP+D+SLR+DRAS+Y+ELGDY KAAESYEQI+RL P VE LK A + Y+KCG+ E AV ILE+++K + EA++S+I+LL + +E A++KAL+ IE A+Q Y GK+ PL L+IKAG+C HLG++E A+ IF +Q NA P IVTEVADSL LK+YE ALKYY+MLE + + G L+ RIAEC ++L +R+++IEY+ KA+ +L DSVD RL L+S+LLEE KDDEA+S+L P + E + + + KP WW N IKLKL QIY+D+GSL++ VD I+P +R++ FL+++Q K + +R+L++S L +R KV+D + D +FHGF+P+A SDL+KA RA+KLL+KKE L+E K+AAALAAG +KSD+SD E P+ V R PLP+LL DEE+ CLI+DLCK+L SLQ+YW+ALEII++ LKLA STLSVE+K EL+++GAQ+ YNI DP HG+DCAR IV+QHPYSFAAWNCYYKVISRLDNR+ KH KFL++MR+KHKDCVPP +I GHQ T I HQ AA++YLEAYKLM DN LINLCVGSALIN+ALG RL NKHQCV+QG+AFL+ NL LS+N QEAL+NI RA HHVGLV+ A +Y++VL RE DYPIPKLPNEN D VE+RKPGYCDL REAAYNLHLIYK+SGA DLARQ+LKD+C+
Sbjct: 162 GSKSKVSPELKRKLGDATLHYAHGRYEEAKRVLREVIRLSPNLPDPYHTLGLIYNAMGDKKRAMNFYMLAAHLSPKDASLWKLLVAWSIEQGDRKQTRYCLSKAITADPEDVSLRYDRASIYIELGDYQKAAESYEQIARLCPNDVEV---------LKTAVQYYRKCGKHEYAVGILEDFLKNHPAEADLSVIHLLAVIHMEDNAHLKALDLIECAKQRYFTGKQMPLNLSIKAGICHLHLGHIEDAKIIFSAVQYENASQHPDIVTEVADSLMTLKNYESALKYYLMLEGDENKNKGYLHLRIAECYVYLRERVQAIEYFSKAVNELEDSVDARLTLSSILLEEHKDDEAVSVLSAPKESESSVDSSSGKPNTWWLNSKIKLKLCQIYRDKGSLEACVDVIFPLIRETLFLKSVQPKVKVRRRLSKSVLNQRIKVVDGHRTDTIFHGFKPVALASDLSKAARARKLLRKKEMLKEAKKAAALAAGANWKSDDSDSESPEHVYREPPLPDLLKDEEHLCLIVDLCKALISLQRYWDALEIINLCLKLASSTLSVEKKGELQALGAQVGYNIADPIHGFDCARSIVSQHPYSFAAWNCYYKVISRLDNRHPKHSKFLNNMRIKHKDCVPPIVIAGHQFTTICHHQDAAREYLEAYKLMTDNQLINLCVGSALINVALGFRLHNKHQCVLQGMAFLYNNLRLSKNRQEALFNIGRACHHVGLVSQAVIYYQRVLDTREDDYPIPKLPNENSDPVENRKPGYCDLRREAAYNLHLIYKTSGAHDLARQILKDYCT 945
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9UFF4 | E-Value: 0.000e+0, PID: 64.37 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A6I9UNW3 | E-Value: 0.000e+0, PID: 64.37 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A834G8R8 | E-Value: 0.000e+0, PID: 66.06 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7125... [more] |
| A0A1J6ICB1 | E-Value: 0.000e+0, PID: 62.97 | (Uncharacterized protein {ECO:0000313|EMBL:OIT0268... [more] |
| A0A1U7X4H4 | E-Value: 0.000e+0, PID: 62.97 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A2G3DFP9 | E-Value: 0.000e+0, PID: 62.30 | (Uncharacterized protein {ECO:0000313|EMBL:PHU2981... [more] |
| A0A1U8HFC8 | E-Value: 0.000e+0, PID: 62.30 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A1U7ZKV3 | E-Value: 0.000e+0, PID: 61.49 | (general transcription factor 3C polypeptide 3 iso... [more] |
| A0A2G2V9C0 | E-Value: 0.000e+0, PID: 62.17 | (Uncharacterized protein {ECO:0000313|EMBL:PHT2950... [more] |
| A0A2G3AIW9 | E-Value: 0.000e+0, PID: 62.04 | (Uncharacterized protein {ECO:0000313|EMBL:PHT9418... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |