Resource Type:
Polypeptide
Name:
XM_017367969.1
Identifier:
XM_017367969.1-protein
Sequence:
MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDTQLLVAQIADACKNW
GFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTE
HTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLREL
CEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCP
SPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYII
NVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVEL
TNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVSA
Sequence Length:
343
Sequence Checksum:
40714986464a4eea39311a8102f6209c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367969.1, derives from mRNA, XM_017367969.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B962 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538990.1}))
HSP 1 Score: 521.931 bits (1343), Expect = 0.000e+0
Identity = 246/350 (70.29%), Postives = 289/350 (82.57%), Query Frame = 0
HSP 2 Score: 175.637 bits (444), Expect = 4.354e-48
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0
Match: A0A5J5B962 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538990.1}))
HSP 1 Score: 521.931 bits (1343), Expect = 0.000e+0
Identity = 246/350 (70.29%), Postives = 289/350 (82.57%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSI---PDTQ------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKV 341
MGEVD +FIQAIEHRPK + EA+GIPLIDLS+ PD+ L A+I DACKNWGFFQVINHGVPS+ R+KV A + FF+Q+ EEK +V+RDE NP+GYYDTEHTKNVRDWKEVFD V+ P +MPVS DP D+E+ +IN+WP P LRE CEEYA+EV+KL FKL+ LI+LSLGLAA R F++ TSFIRLN+YP CP P LALGVGRHKDAGALTVL QD+VGGL+VK KTDGEWIR+KPTPNAYIIN+GDI+QVWSNDKYESVEHRVMVNS++ERFSIPFFFNP+H V+P+ ELTN++NPA Y+ YNWGKF TRK SNFKKL+VENIQ +HFK+
Sbjct: 1 MGEVDTAFIQAIEHRPKLAIIEAEGIPLIDLSVLNSPDSSNPSVISHLAAEIGDACKNWGFFQVINHGVPSERRQKVELAMRKFFAQSTEEKRKVKRDEMNPMGYYDTEHTKNVRDWKEVFDLAVQVPTLMPVSQDPNDKELMDYINRWPEYPPELREACEEYAEEVEKLCFKLLELISLSLGLAAKRLHGLFKEQTSFIRLNHYPACPIPQLALGVGRHKDAGALTVLAQDNVGGLQVKRKTDGEWIRIKPTPNAYIINIGDIMQVWSNDKYESVEHRVMVNSEKERFSIPFFFNPAHYVMVEPIEELTNEQNPAKYKAYNWGKFSATRKQSNFKKLNVENIQAHHFKI 350
HSP 2 Score: 175.637 bits (444), Expect = 4.354e-48
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0
Query: 158 VKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYES 266
VKKL FKL+ L +LSLGLAA R + F++ TSFIRLN+YP CP P LALGVGRHKD GALTV QD+VGGL+VK KTD EWIR+KPTPNAYIIN+GDI+QVWSN+KYE
Sbjct: 362 VKKLCFKLLELTSLSLGLAAKRLNGLFKEQTSFIRLNHYPACPIPQLALGVGRHKDGGALTVFAQDNVGGLQVKRKTDAEWIRIKPTPNAYIINIGDIMQVWSNEKYEC 470
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AJN6 ((Putative 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:MPA56970.1}) (1.14.11.- {ECO:0000313|EMBL:MPA56970.1}) (Fragment))
HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 248/352 (70.45%), Postives = 291/352 (82.67%), Query Frame = 0
Match: A0A5B7AJN6 ((Putative 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:MPA56970.1}) (1.14.11.- {ECO:0000313|EMBL:MPA56970.1}) (Fragment))
HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 248/352 (70.45%), Postives = 291/352 (82.67%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDT----------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MGEVD +FIQAIEHRPK + EAQGIP IDLS+ ++ LVA+I DACKNWGFFQVINHGVP + R+K+ AS+ F Q+ EEK +VRRDE NP+GYYDTEHTKNVRDWKEVFD TVE+P V+P S +P D+E+K++INQWP+ P LRE EEYA+E+K LS+KL+ LI+LSLGL A R + F+D TSFIRLN+YPPCP P LALGVGRHKDAGALT+L QDDVGGLEVK KTDGEWIRV+PTP+A+IINVGDIIQVWSNDKYESVEHRVMVNS+RERFSIPFF NP H V+P+ ELT+++NPA Y YNWGKFFVTRK SNFKKL+VENIQI+HFK++
Sbjct: 12 MGEVDSAFIQAIEHRPKLAIIEAQGIPAIDLSVLNSADHYSNASAKSRLVAEIGDACKNWGFFQVINHGVPLERRQKLELASRKLFDQSTEEKRKVRRDEVNPMGYYDTEHTKNVRDWKEVFDLTVENPTVVPASHEPDDKELKEWINQWPQYPPELREAFEEYAQEMKNLSYKLLELISLSLGLPAKRLNDFFKDQTSFIRLNHYPPCPIPHLALGVGRHKDAGALTILAQDDVGGLEVKRKTDGEWIRVRPTPDAFIINVGDIIQVWSNDKYESVEHRVMVNSERERFSIPFFLNPGHYVMVEPLEELTDEQNPAKYRAYNWGKFFVTRKGSNFKKLNVENIQIHHFKIA 363
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U3B5 ((protein DMR6-LIKE OXYGENASE 1 {ECO:0000313|RefSeq:XP_011088308.1}))
HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 250/348 (71.84%), Postives = 281/348 (80.75%), Query Frame = 0
Match: A0A6I9U3B5 ((protein DMR6-LIKE OXYGENASE 1 {ECO:0000313|RefSeq:XP_011088308.1}))
HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 250/348 (71.84%), Postives = 281/348 (80.75%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDT--------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFK 340
MGEVD +FIQA+EHRPKP EAQGIPLIDLS ++ L A+I DAC+ WGFFQVINHGVP +REK+ S+ FF+ KEEK +V RDE NP GYYDTEHTKNVRDWKEVFDFTV PMVMP S +P D E+K+ INQWP NP +RE+CEEY E++KL KL+ LIALSLGLA DRF+ F+D T+FIRLNYY PCP PDLALGVGRHKD GALT+L QDDVGGLEVK KTDGEWI VKPTP+AYIINVGDIIQVWSNDKYESVEHRV VNS+RERFSIPFF NP+H T V+P+ EL N +NPANY YNWGKFF TRK SN+KKLDVENIQI+HFK
Sbjct: 1 MGEVDPAFIQALEHRPKPHSVEAQGIPLIDLSPANSPDPDPGSLSALAAEIGDACEKWGFFQVINHGVPLHVREKIDLVSRKFFALPKEEKKKVSRDEVNPSGYYDTEHTKNVRDWKEVFDFTVGEPMVMPASHEPDDRELKEVINQWPENPSEMREVCEEYGAEMQKLGHKLLELIALSLGLARDRFNGFFKDQTTFIRLNYYAPCPIPDLALGVGRHKDGGALTILAQDDVGGLEVKRKTDGEWILVKPTPDAYIINVGDIIQVWSNDKYESVEHRVKVNSERERFSIPFFLNPAHYTMVEPLEELVNKQNPANYNPYNWGKFFSTRKRSNYKKLDVENIQIHHFK 348
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5FZ51 ((Isopenicillin N synthase {ECO:0000313|EMBL:POO03047.1}))
HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 247/343 (72.01%), Postives = 286/343 (83.38%), Query Frame = 0
Match: A0A2P5FZ51 ((Isopenicillin N synthase {ECO:0000313|EMBL:POO03047.1}))
HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 247/343 (72.01%), Postives = 286/343 (83.38%), Query Frame = 0
Query: 1 MG-EVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDTQLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MG EVD +F+QA EHRPKPT+ EAQGIPLIDLS P + +V +I AC WGFFQVINHGVP + R ++ SA + FF+ EEK RV+RDE LGYYDTEHTKNVRDWKEVFDFTVE P +MP S DP D+EV + NQWP+NP LRE C+EYA+EV+KLS KLM LIALSLGL A RF+ F+D TSFIRLN+YPPCP P LALGVGRHKDAGALTVL QDDVGGLEVK K+DGEWIRVKPTP+A+IINVGD+IQVWSN++YESVEHRVMVNS+RERFS+PFF NP+H T ++P+ ELT+++NPA Y YNWGKFF TRK SNFKKLDVENIQI+HFK+S
Sbjct: 1 MGTEVDAAFVQAPEHRPKPTIVEAQGIPLIDLSGP-MEDVVREIGGACSEWGFFQVINHGVPPETRRRIESAEREFFALPPEEKRRVKRDEVRVLGYYDTEHTKNVRDWKEVFDFTVEDPTLMPASFDPDDKEVATWSNQWPQNPPKLRETCQEYAQEVQKLSIKLMELIALSLGLPATRFNGFFKDQTSFIRLNHYPPCPIPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWIRVKPTPDAFIINVGDMIQVWSNERYESVEHRVMVNSERERFSVPFFLNPAHYTMIEPLEELTDEQNPAKYRAYNWGKFFATRKASNFKKLDVENIQISHFKLS 342
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YA28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8377493.1}))
HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 242/348 (69.54%), Postives = 287/348 (82.47%), Query Frame = 0
Match: A0A834YA28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8377493.1}))
HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 242/348 (69.54%), Postives = 287/348 (82.47%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDTQ------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MGEVD +F+QA+EHRPKPT+ EA GIPLIDLS+ ++ LVA+I A K+WGFFQVINHGVPS LR+++ +A+K FF+ + EEK +VRRDE NPLGYYDTE TKNVRDWKEVFDFTVE+P V+P S +P D+E++ INQWP P +RE CE+YA+ V+KLS+KL+ LI+ SLGL R + F++ TSFIRLN+YPPCPSP LALGVGRHKD GALTVL QDDVGGL+VK K DGEW+RVKP P++YIINVGDI+QVWSN+KYES EHRV VNS+RERFSIPFFFNPSH VKP+ EL N++NPA Y EYNWGKFF TRKLSNFKKLDVENIQI HFK+S
Sbjct: 1 MGEVDPAFVQALEHRPKPTIVEAGGIPLIDLSVLNSDDPRALAGLVAEIGSASKDWGFFQVINHGVPSDLRQRIETAAKKFFALSLEEKRKVRRDENNPLGYYDTELTKNVRDWKEVFDFTVENPTVIPASHEPHDQELQTLINQWPEYPTEMREACEDYARGVEKLSYKLLELISQSLGLPEKRLNGYFKEQTSFIRLNHYPPCPSPQLALGVGRHKDGGALTVLAQDDVGGLDVKRKVDGEWVRVKPIPDSYIINVGDIVQVWSNEKYESAEHRVTVNSERERFSIPFFFNPSHYVMVKPLEELINEQNPAKYREYNWGKFFKTRKLSNFKKLDVENIQIYHFKIS 348
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BVT7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 247/351 (70.37%), Postives = 287/351 (81.77%), Query Frame = 0
Match: A0A5J5BVT7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 247/351 (70.37%), Postives = 287/351 (81.77%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSI---PDTQ------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MGEVD +FIQAIEHRPK + EA+GIPLIDLS PD+ LVA+I +ACKNWGFFQVINHGVP + R+ + AS+ FF+Q+ EEK +VRRDE NP+GYYDTEHTKNVRDWKEVFDF VE+PMVMP S +P D+E+ K+INQWP P LRE E YA+E+KKLS+KL+ LI+LSLGL A R + F+D TS IRLN+YPPCP P LALGVGRHKD GALT+L QDDVGGLEVK KTDGEWIRV+PTP+AYIINVGDIIQVWSNDKYESVEHRVMVNS+RERFSIPFF NP H V+P+ ELT+++NPA Y+ YNWGKF TR SNFKKL VENIQI+HFK++
Sbjct: 1 MGEVDSAFIQAIEHRPKLAIVEAEGIPLIDLSALNSPDSSNPSAISRLVAEIGEACKNWGFFQVINHGVPFERRQNMELASRKFFAQSTEEKRKVRRDEMNPMGYYDTEHTKNVRDWKEVFDFAVENPMVMPASHEPDDKELTKWINQWPDYPSELREASEAYAEELKKLSYKLVELISLSLGLPAKRLNAFFKDQTSSIRLNHYPPCPIPHLALGVGRHKDPGALTILGQDDVGGLEVKRKTDGEWIRVRPTPDAYIINVGDIIQVWSNDKYESVEHRVMVNSQRERFSIPFFLNPGHHVMVEPLEELTDEQNPAKYKAYNWGKFRATRIRSNFKKLSVENIQIHHFKIA 351
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TMF8 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 248/350 (70.86%), Postives = 288/350 (82.29%), Query Frame = 0
Match: A0A068TMF8 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 248/350 (70.86%), Postives = 288/350 (82.29%), Query Frame = 0
Query: 1 MGE--VDVSFIQAIEHRPKPTVTEAQGIPLIDLSI-------PDTQLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKV 341
MGE VD +F+Q IEHRPKPT EA+GIPLIDLS D LV++I DA + WGFFQVINHGVP + REK+ AS+ FF+ KEEKL+V RDE NP GYYDTEHTKNVRDWKEVFDF+V++P +P S +P D+EV++ INQWP+NP LRE+CEEYA EV+KL+FKL+ LIALSLGL +RF+ FED T+FIRLN+YPPCPSP LALGVGRHKDAGALT+L QDDVGGLEVK KTDGEWI VKPTPNAYIINVGDIIQVWSN+KYESVEHRV VNS++ERFSIPFFFNP+H T V+P EL N++NP Y+ YNWGKFF TRK SNFKKL+VEN+QI HFK+
Sbjct: 1 MGEAAVDPAFVQDIEHRPKPTRIEAEGIPLIDLSALNSPHSDADLARLVSEIGDASQKWGFFQVINHGVPLECREKMELASRKFFALPKEEKLKVGRDEANPYGYYDTEHTKNVRDWKEVFDFSVKNPTFIPASHEPDDQEVRELINQWPQNPPELREVCEEYAHEVEKLAFKLLELIALSLGLPKNRFNGFFEDETTFIRLNHYPPCPSPHLALGVGRHKDAGALTILAQDDVGGLEVKSKTDGEWILVKPTPNAYIINVGDIIQVWSNEKYESVEHRVSVNSEKERFSIPFFFNPAHHTWVQPSEELINEQNPLKYKPYNWGKFFTTRKRSNFKKLNVENLQIYHFKI 350
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5VMX5 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 510.375 bits (1313), Expect = 1.054e-180
Identity = 247/355 (69.58%), Postives = 289/355 (81.41%), Query Frame = 0
Match: M5VMX5 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 510.375 bits (1313), Expect = 1.054e-180
Identity = 247/355 (69.58%), Postives = 289/355 (81.41%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLS------IPDT-------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MGEVD +FIQ EHRPK ++TEA+GIPLIDLS PD+ + LV +I ACKNWGFFQVINHGV REK+ +A++ FF+Q EEK ++RRDE+ +GYYDTEHTKNVRDWKEVFDF VE P ++P S DP D+E ++INQWP NP LR +CEEYA+EV+KL+ KLMGLIALSLGL DRF+ F+D TSFIRLN+YPPCPSP LALGVGRHKD GALTVL QDDVGGLEVK KTDGEWIRVKPTPNAYIINVGD+IQVWSN++YESVEHRVMVNS++ERFSIPFF NP+H T+VKP+ ELT++ NPA Y+ Y+WGKF RKLSNFKKL+ ENIQI HF+VS
Sbjct: 1 MGEVDPAFIQDPEHRPKLSITEAEGIPLIDLSPINSILTPDSISELKAIEGLVREIGSACKNWGFFQVINHGVALDKREKIETAARKFFAQPLEEKRKIRRDEKIVVGYYDTEHTKNVRDWKEVFDFVVEEPTLVPASLDPEDKEETEWINQWPENPPELRLVCEEYAREVEKLALKLMGLIALSLGLPEDRFNSYFKDQTSFIRLNHYPPCPSPRLALGVGRHKDGGALTVLAQDDVGGLEVKRKTDGEWIRVKPTPNAYIINVGDVIQVWSNERYESVEHRVMVNSEKERFSIPFFLNPAHYTQVKPLEELTDERNPAKYKPYSWGKFITHRKLSNFKKLNTENIQIYHFRVS 355
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZMI9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409991.1}))
HSP 1 Score: 510.375 bits (1313), Expect = 1.203e-180
Identity = 248/352 (70.45%), Postives = 284/352 (80.68%), Query Frame = 0
Match: A0A834ZMI9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409991.1}))
HSP 1 Score: 510.375 bits (1313), Expect = 1.203e-180
Identity = 248/352 (70.45%), Postives = 284/352 (80.68%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSI---PDTQ-------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MGE+D +FIQAIEHRPK T+ EA GIPLIDLS+ PD+ LVAQI DACKNWGFFQVINHGVPS L + +A K FF EEK +VRRDE NPLGY+DTEHTKNVRDWKEVFDF ++ V P S +P DEE KFINQWP P LRE CEEY + V+KLS+KL LI++SLGL A RF+ F++ TSFIRLN+YPPCP+P+L LGVGRHKDAGALTVL QDDVGGL+VK KTDGEWIRVKP P++YIINVGDIIQVWSNDKYES EHRV+VNS+RERFSIPFFFNPS+ T VKP+ EL NDENPA Y+EYNWG F TRK SNFKKL+VEN+QI+HFK++
Sbjct: 1 MGEIDPAFIQAIEHRPKQTIVEAGGIPLIDLSLLNDPDSSDDPRALAGLVAQIGDACKNWGFFQVINHGVPSDLLRGLLTAGKFFFDLPLEEKRKVRRDEENPLGYFDTEHTKNVRDWKEVFDFMADNGTVKPASYEPADEEHHKFINQWPEYPPQLREACEEYGRNVEKLSYKLFELISMSLGLPAKRFNGFFKEQTSFIRLNHYPPCPTPELTLGVGRHKDAGALTVLAQDDVGGLDVKRKTDGEWIRVKPIPDSYIINVGDIIQVWSNDKYESAEHRVVVNSERERFSIPFFFNPSYYTIVKPIEELINDENPAKYKEYNWGMFLSTRKNSNFKKLEVENLQIHHFKIT 352
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5VSM4 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 510.375 bits (1313), Expect = 1.255e-180
Identity = 247/355 (69.58%), Postives = 287/355 (80.85%), Query Frame = 0
Match: A0A6J5VSM4 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 510.375 bits (1313), Expect = 1.255e-180
Identity = 247/355 (69.58%), Postives = 287/355 (80.85%), Query Frame = 0
Query: 1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLS------IPDT-------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
MGEVD +FIQ EHRPK ++ EA+GIPLIDLS PD+ + LV +I ACK+WGFFQVINHGV REK+ +A++ FF+Q EEK ++RRDE+ +GYYDTEHTKNVRDWKEVFDF VE P ++P SPDP D+E ++INQWP NP LR CEEYA+EV+KL+ KLMGLIALSLGL DRF+ F+D TSFIRLN+YPPCPSP LALGVGRHKD GALTVL QDDVGGLEVK KTDGEWIRVKPTPNAYIINVGD+IQVWSN++YESVEHRVMVNS++ERFSIPFF +P+H T+VKP+ ELTN+ NPA Y+ Y+WGKF RKLSNFKKL ENIQI HFKVS
Sbjct: 1 MGEVDPAFIQDPEHRPKLSIIEAEGIPLIDLSPINSIPTPDSISELKAIEGLVREIGSACKDWGFFQVINHGVALDKREKIETAARKFFAQPLEEKRKIRRDEKIVVGYYDTEHTKNVRDWKEVFDFVVEEPTLVPASPDPEDKEETEWINQWPENPPELRPACEEYAREVEKLALKLMGLIALSLGLPEDRFNSYFKDQTSFIRLNHYPPCPSPRLALGVGRHKDGGALTVLAQDDVGGLEVKRKTDGEWIRVKPTPNAYIINVGDVIQVWSNERYESVEHRVMVNSEKERFSIPFFLSPAHYTQVKPLEELTNERNPAKYKPYSWGKFITHRKLSNFKKLSTENIQIYHFKVS 355
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B962 | E-Value: 4.354e-48, PID: 70.29 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8538... [more] |
| A0A5B7AJN6 | E-Value: 0.000e+0, PID: 70.45 | (Putative 2-oxoglutarate and Fe(II)-dependent oxyg... [more] |
| A0A6I9U3B5 | E-Value: 0.000e+0, PID: 71.84 | (protein DMR6-LIKE OXYGENASE 1 {ECO:0000313|RefSeq... [more] |
| A0A2P5FZ51 | E-Value: 0.000e+0, PID: 72.01 | (Isopenicillin N synthase {ECO:0000313|EMBL:POO030... [more] |
| A0A834YA28 | E-Value: 0.000e+0, PID: 69.54 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8377... [more] |
| A0A5J5BVT7 | E-Value: 0.000e+0, PID: 70.37 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A068TMF8 | E-Value: 0.000e+0, PID: 70.86 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| M5VMX5 | E-Value: 1.054e-180, PID: 69.58 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A834ZMI9 | E-Value: 1.203e-180, PID: 70.45 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8409... [more] |
| A0A6J5VSM4 | E-Value: 1.255e-180, PID: 69.58 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |