XM_017367969.1

Resource Type: 
Polypeptide
Name: 
XM_017367969.1
Identifier: 
XM_017367969.1-protein
Sequence: 
MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDTQLLVAQIADACKNW
GFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTE
HTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLREL
CEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCP
SPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYII
NVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVEL
TNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVSA
Sequence Length: 
343
Sequence Checksum: 
40714986464a4eea39311a8102f6209c
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017367969.1, derives from mRNA, XM_017367969.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B962 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538990.1}))

HSP 1 Score: 521.931 bits (1343), Expect = 0.000e+0
Identity = 246/350 (70.29%), Postives = 289/350 (82.57%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSI---PDTQ------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKV 341
            MGEVD +FIQAIEHRPK  + EA+GIPLIDLS+   PD+        L A+I DACKNWGFFQVINHGVPS+ R+KV  A + FF+Q+ EEK +V+RDE NP+GYYDTEHTKNVRDWKEVFD  V+ P +MPVS DP D+E+  +IN+WP  P  LRE CEEYA+EV+KL FKL+ LI+LSLGLAA R    F++ TSFIRLN+YP CP P LALGVGRHKDAGALTVL QD+VGGL+VK KTDGEWIR+KPTPNAYIIN+GDI+QVWSNDKYESVEHRVMVNS++ERFSIPFFFNP+H   V+P+ ELTN++NPA Y+ YNWGKF  TRK SNFKKL+VENIQ +HFK+
Sbjct:    1 MGEVDTAFIQAIEHRPKLAIIEAEGIPLIDLSVLNSPDSSNPSVISHLAAEIGDACKNWGFFQVINHGVPSERRQKVELAMRKFFAQSTEEKRKVKRDEMNPMGYYDTEHTKNVRDWKEVFDLAVQVPTLMPVSQDPNDKELMDYINRWPEYPPELREACEEYAEEVEKLCFKLLELISLSLGLAAKRLHGLFKEQTSFIRLNHYPACPIPQLALGVGRHKDAGALTVLAQDNVGGLQVKRKTDGEWIRIKPTPNAYIINIGDIMQVWSNDKYESVEHRVMVNSEKERFSIPFFFNPAHYVMVEPIEELTNEQNPAKYKAYNWGKFSATRKQSNFKKLNVENIQAHHFKI 350    

HSP 2 Score: 175.637 bits (444), Expect = 4.354e-48
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0
 
Query:  158 VKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYES 266
            VKKL FKL+ L +LSLGLAA R +  F++ TSFIRLN+YP CP P LALGVGRHKD GALTV  QD+VGGL+VK KTD EWIR+KPTPNAYIIN+GDI+QVWSN+KYE 
Sbjct:  362 VKKLCFKLLELTSLSLGLAAKRLNGLFKEQTSFIRLNHYPACPIPQLALGVGRHKDGGALTVFAQDNVGGLQVKRKTDAEWIRIKPTPNAYIINIGDIMQVWSNEKYEC 470    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AJN6 ((Putative 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:MPA56970.1}) (1.14.11.- {ECO:0000313|EMBL:MPA56970.1}) (Fragment))

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 248/352 (70.45%), Postives = 291/352 (82.67%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDT----------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MGEVD +FIQAIEHRPK  + EAQGIP IDLS+ ++            LVA+I DACKNWGFFQVINHGVP + R+K+  AS+  F Q+ EEK +VRRDE NP+GYYDTEHTKNVRDWKEVFD TVE+P V+P S +P D+E+K++INQWP+ P  LRE  EEYA+E+K LS+KL+ LI+LSLGL A R +  F+D TSFIRLN+YPPCP P LALGVGRHKDAGALT+L QDDVGGLEVK KTDGEWIRV+PTP+A+IINVGDIIQVWSNDKYESVEHRVMVNS+RERFSIPFF NP H   V+P+ ELT+++NPA Y  YNWGKFFVTRK SNFKKL+VENIQI+HFK++
Sbjct:   12 MGEVDSAFIQAIEHRPKLAIIEAQGIPAIDLSVLNSADHYSNASAKSRLVAEIGDACKNWGFFQVINHGVPLERRQKLELASRKLFDQSTEEKRKVRRDEVNPMGYYDTEHTKNVRDWKEVFDLTVENPTVVPASHEPDDKELKEWINQWPQYPPELREAFEEYAQEMKNLSYKLLELISLSLGLPAKRLNDFFKDQTSFIRLNHYPPCPIPHLALGVGRHKDAGALTILAQDDVGGLEVKRKTDGEWIRVRPTPDAFIINVGDIIQVWSNDKYESVEHRVMVNSERERFSIPFFLNPGHYVMVEPLEELTDEQNPAKYRAYNWGKFFVTRKGSNFKKLNVENIQIHHFKIA 363    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U3B5 ((protein DMR6-LIKE OXYGENASE 1 {ECO:0000313|RefSeq:XP_011088308.1}))

HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 250/348 (71.84%), Postives = 281/348 (80.75%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDT--------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFK 340
            MGEVD +FIQA+EHRPKP   EAQGIPLIDLS  ++          L A+I DAC+ WGFFQVINHGVP  +REK+   S+ FF+  KEEK +V RDE NP GYYDTEHTKNVRDWKEVFDFTV  PMVMP S +P D E+K+ INQWP NP  +RE+CEEY  E++KL  KL+ LIALSLGLA DRF+  F+D T+FIRLNYY PCP PDLALGVGRHKD GALT+L QDDVGGLEVK KTDGEWI VKPTP+AYIINVGDIIQVWSNDKYESVEHRV VNS+RERFSIPFF NP+H T V+P+ EL N +NPANY  YNWGKFF TRK SN+KKLDVENIQI+HFK
Sbjct:    1 MGEVDPAFIQALEHRPKPHSVEAQGIPLIDLSPANSPDPDPGSLSALAAEIGDACEKWGFFQVINHGVPLHVREKIDLVSRKFFALPKEEKKKVSRDEVNPSGYYDTEHTKNVRDWKEVFDFTVGEPMVMPASHEPDDRELKEVINQWPENPSEMREVCEEYGAEMQKLGHKLLELIALSLGLARDRFNGFFKDQTTFIRLNYYAPCPIPDLALGVGRHKDGGALTILAQDDVGGLEVKRKTDGEWILVKPTPDAYIINVGDIIQVWSNDKYESVEHRVKVNSERERFSIPFFLNPAHYTMVEPLEELVNKQNPANYNPYNWGKFFSTRKRSNYKKLDVENIQIHHFK 348    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5FZ51 ((Isopenicillin N synthase {ECO:0000313|EMBL:POO03047.1}))

HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 247/343 (72.01%), Postives = 286/343 (83.38%), Query Frame = 0
 
Query:    1 MG-EVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDTQLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MG EVD +F+QA EHRPKPT+ EAQGIPLIDLS P  + +V +I  AC  WGFFQVINHGVP + R ++ SA + FF+   EEK RV+RDE   LGYYDTEHTKNVRDWKEVFDFTVE P +MP S DP D+EV  + NQWP+NP  LRE C+EYA+EV+KLS KLM LIALSLGL A RF+  F+D TSFIRLN+YPPCP P LALGVGRHKDAGALTVL QDDVGGLEVK K+DGEWIRVKPTP+A+IINVGD+IQVWSN++YESVEHRVMVNS+RERFS+PFF NP+H T ++P+ ELT+++NPA Y  YNWGKFF TRK SNFKKLDVENIQI+HFK+S
Sbjct:    1 MGTEVDAAFVQAPEHRPKPTIVEAQGIPLIDLSGP-MEDVVREIGGACSEWGFFQVINHGVPPETRRRIESAEREFFALPPEEKRRVKRDEVRVLGYYDTEHTKNVRDWKEVFDFTVEDPTLMPASFDPDDKEVATWSNQWPQNPPKLRETCQEYAQEVQKLSIKLMELIALSLGLPATRFNGFFKDQTSFIRLNHYPPCPIPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWIRVKPTPDAFIINVGDMIQVWSNERYESVEHRVMVNSERERFSVPFFLNPAHYTMIEPLEELTDEQNPAKYRAYNWGKFFATRKASNFKKLDVENIQISHFKLS 342    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YA28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8377493.1}))

HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 242/348 (69.54%), Postives = 287/348 (82.47%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSIPDTQ------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MGEVD +F+QA+EHRPKPT+ EA GIPLIDLS+ ++        LVA+I  A K+WGFFQVINHGVPS LR+++ +A+K FF+ + EEK +VRRDE NPLGYYDTE TKNVRDWKEVFDFTVE+P V+P S +P D+E++  INQWP  P  +RE CE+YA+ V+KLS+KL+ LI+ SLGL   R +  F++ TSFIRLN+YPPCPSP LALGVGRHKD GALTVL QDDVGGL+VK K DGEW+RVKP P++YIINVGDI+QVWSN+KYES EHRV VNS+RERFSIPFFFNPSH   VKP+ EL N++NPA Y EYNWGKFF TRKLSNFKKLDVENIQI HFK+S
Sbjct:    1 MGEVDPAFVQALEHRPKPTIVEAGGIPLIDLSVLNSDDPRALAGLVAEIGSASKDWGFFQVINHGVPSDLRQRIETAAKKFFALSLEEKRKVRRDENNPLGYYDTELTKNVRDWKEVFDFTVENPTVIPASHEPHDQELQTLINQWPEYPTEMREACEDYARGVEKLSYKLLELISQSLGLPEKRLNGYFKEQTSFIRLNHYPPCPSPQLALGVGRHKDGGALTVLAQDDVGGLDVKRKVDGEWVRVKPIPDSYIINVGDIVQVWSNEKYESAEHRVTVNSERERFSIPFFFNPSHYVMVKPLEELINEQNPAKYREYNWGKFFKTRKLSNFKKLDVENIQIYHFKIS 348    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BVT7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})

HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 247/351 (70.37%), Postives = 287/351 (81.77%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSI---PDTQ------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MGEVD +FIQAIEHRPK  + EA+GIPLIDLS    PD+        LVA+I +ACKNWGFFQVINHGVP + R+ +  AS+ FF+Q+ EEK +VRRDE NP+GYYDTEHTKNVRDWKEVFDF VE+PMVMP S +P D+E+ K+INQWP  P  LRE  E YA+E+KKLS+KL+ LI+LSLGL A R +  F+D TS IRLN+YPPCP P LALGVGRHKD GALT+L QDDVGGLEVK KTDGEWIRV+PTP+AYIINVGDIIQVWSNDKYESVEHRVMVNS+RERFSIPFF NP H   V+P+ ELT+++NPA Y+ YNWGKF  TR  SNFKKL VENIQI+HFK++
Sbjct:    1 MGEVDSAFIQAIEHRPKLAIVEAEGIPLIDLSALNSPDSSNPSAISRLVAEIGEACKNWGFFQVINHGVPFERRQNMELASRKFFAQSTEEKRKVRRDEMNPMGYYDTEHTKNVRDWKEVFDFAVENPMVMPASHEPDDKELTKWINQWPDYPSELREASEAYAEELKKLSYKLVELISLSLGLPAKRLNAFFKDQTSSIRLNHYPPCPIPHLALGVGRHKDPGALTILGQDDVGGLEVKRKTDGEWIRVRPTPDAYIINVGDIIQVWSNDKYESVEHRVMVNSQRERFSIPFFLNPGHHVMVEPLEELTDEQNPAKYKAYNWGKFRATRIRSNFKKLSVENIQIHHFKIA 351    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TMF8 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})

HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 248/350 (70.86%), Postives = 288/350 (82.29%), Query Frame = 0
 
Query:    1 MGE--VDVSFIQAIEHRPKPTVTEAQGIPLIDLSI-------PDTQLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKV 341
            MGE  VD +F+Q IEHRPKPT  EA+GIPLIDLS         D   LV++I DA + WGFFQVINHGVP + REK+  AS+ FF+  KEEKL+V RDE NP GYYDTEHTKNVRDWKEVFDF+V++P  +P S +P D+EV++ INQWP+NP  LRE+CEEYA EV+KL+FKL+ LIALSLGL  +RF+  FED T+FIRLN+YPPCPSP LALGVGRHKDAGALT+L QDDVGGLEVK KTDGEWI VKPTPNAYIINVGDIIQVWSN+KYESVEHRV VNS++ERFSIPFFFNP+H T V+P  EL N++NP  Y+ YNWGKFF TRK SNFKKL+VEN+QI HFK+
Sbjct:    1 MGEAAVDPAFVQDIEHRPKPTRIEAEGIPLIDLSALNSPHSDADLARLVSEIGDASQKWGFFQVINHGVPLECREKMELASRKFFALPKEEKLKVGRDEANPYGYYDTEHTKNVRDWKEVFDFSVKNPTFIPASHEPDDQEVRELINQWPQNPPELREVCEEYAHEVEKLAFKLLELIALSLGLPKNRFNGFFEDETTFIRLNHYPPCPSPHLALGVGRHKDAGALTILAQDDVGGLEVKSKTDGEWILVKPTPNAYIINVGDIIQVWSNEKYESVEHRVSVNSEKERFSIPFFFNPAHHTWVQPSEELINEQNPLKYKPYNWGKFFTTRKRSNFKKLNVENLQIYHFKI 350    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5VMX5 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})

HSP 1 Score: 510.375 bits (1313), Expect = 1.054e-180
Identity = 247/355 (69.58%), Postives = 289/355 (81.41%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLS------IPDT-------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MGEVD +FIQ  EHRPK ++TEA+GIPLIDLS       PD+       + LV +I  ACKNWGFFQVINHGV    REK+ +A++ FF+Q  EEK ++RRDE+  +GYYDTEHTKNVRDWKEVFDF VE P ++P S DP D+E  ++INQWP NP  LR +CEEYA+EV+KL+ KLMGLIALSLGL  DRF+  F+D TSFIRLN+YPPCPSP LALGVGRHKD GALTVL QDDVGGLEVK KTDGEWIRVKPTPNAYIINVGD+IQVWSN++YESVEHRVMVNS++ERFSIPFF NP+H T+VKP+ ELT++ NPA Y+ Y+WGKF   RKLSNFKKL+ ENIQI HF+VS
Sbjct:    1 MGEVDPAFIQDPEHRPKLSITEAEGIPLIDLSPINSILTPDSISELKAIEGLVREIGSACKNWGFFQVINHGVALDKREKIETAARKFFAQPLEEKRKIRRDEKIVVGYYDTEHTKNVRDWKEVFDFVVEEPTLVPASLDPEDKEETEWINQWPENPPELRLVCEEYAREVEKLALKLMGLIALSLGLPEDRFNSYFKDQTSFIRLNHYPPCPSPRLALGVGRHKDGGALTVLAQDDVGGLEVKRKTDGEWIRVKPTPNAYIINVGDVIQVWSNERYESVEHRVMVNSEKERFSIPFFLNPAHYTQVKPLEELTDERNPAKYKPYSWGKFITHRKLSNFKKLNTENIQIYHFRVS 355    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZMI9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409991.1}))

HSP 1 Score: 510.375 bits (1313), Expect = 1.203e-180
Identity = 248/352 (70.45%), Postives = 284/352 (80.68%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLSI---PDTQ-------LLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MGE+D +FIQAIEHRPK T+ EA GIPLIDLS+   PD+         LVAQI DACKNWGFFQVINHGVPS L   + +A K FF    EEK +VRRDE NPLGY+DTEHTKNVRDWKEVFDF  ++  V P S +P DEE  KFINQWP  P  LRE CEEY + V+KLS+KL  LI++SLGL A RF+  F++ TSFIRLN+YPPCP+P+L LGVGRHKDAGALTVL QDDVGGL+VK KTDGEWIRVKP P++YIINVGDIIQVWSNDKYES EHRV+VNS+RERFSIPFFFNPS+ T VKP+ EL NDENPA Y+EYNWG F  TRK SNFKKL+VEN+QI+HFK++
Sbjct:    1 MGEIDPAFIQAIEHRPKQTIVEAGGIPLIDLSLLNDPDSSDDPRALAGLVAQIGDACKNWGFFQVINHGVPSDLLRGLLTAGKFFFDLPLEEKRKVRRDEENPLGYFDTEHTKNVRDWKEVFDFMADNGTVKPASYEPADEEHHKFINQWPEYPPQLREACEEYGRNVEKLSYKLFELISMSLGLPAKRFNGFFKEQTSFIRLNHYPPCPTPELTLGVGRHKDAGALTVLAQDDVGGLDVKRKTDGEWIRVKPIPDSYIINVGDIIQVWSNDKYESAEHRVVVNSERERFSIPFFFNPSYYTIVKPIEELINDENPAKYKEYNWGMFLSTRKNSNFKKLEVENLQIHHFKIT 352    
BLAST of XM_017367969.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5VSM4 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})

HSP 1 Score: 510.375 bits (1313), Expect = 1.255e-180
Identity = 247/355 (69.58%), Postives = 287/355 (80.85%), Query Frame = 0
 
Query:    1 MGEVDVSFIQAIEHRPKPTVTEAQGIPLIDLS------IPDT-------QLLVAQIADACKNWGFFQVINHGVPSQLREKVFSASKSFFSQAKEEKLRVRRDERNPLGYYDTEHTKNVRDWKEVFDFTVESPMVMPVSPDPRDEEVKKFINQWPRNPENLRELCEEYAKEVKKLSFKLMGLIALSLGLAADRFDKCFEDSTSFIRLNYYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLEVKPKTDGEWIRVKPTPNAYIINVGDIIQVWSNDKYESVEHRVMVNSKRERFSIPFFFNPSHSTRVKPVVELTNDENPANYEEYNWGKFFVTRKLSNFKKLDVENIQINHFKVS 342
            MGEVD +FIQ  EHRPK ++ EA+GIPLIDLS       PD+       + LV +I  ACK+WGFFQVINHGV    REK+ +A++ FF+Q  EEK ++RRDE+  +GYYDTEHTKNVRDWKEVFDF VE P ++P SPDP D+E  ++INQWP NP  LR  CEEYA+EV+KL+ KLMGLIALSLGL  DRF+  F+D TSFIRLN+YPPCPSP LALGVGRHKD GALTVL QDDVGGLEVK KTDGEWIRVKPTPNAYIINVGD+IQVWSN++YESVEHRVMVNS++ERFSIPFF +P+H T+VKP+ ELTN+ NPA Y+ Y+WGKF   RKLSNFKKL  ENIQI HFKVS
Sbjct:    1 MGEVDPAFIQDPEHRPKLSIIEAEGIPLIDLSPINSIPTPDSISELKAIEGLVREIGSACKDWGFFQVINHGVALDKREKIETAARKFFAQPLEEKRKIRRDEKIVVGYYDTEHTKNVRDWKEVFDFVVEEPTLVPASPDPEDKEETEWINQWPENPPELRPACEEYAREVEKLALKLMGLIALSLGLPEDRFNSYFKDQTSFIRLNHYPPCPSPRLALGVGRHKDGGALTVLAQDDVGGLEVKRKTDGEWIRVKPTPNAYIINVGDVIQVWSNERYESVEHRVMVNSEKERFSIPFFLSPAHYTQVKPLEELTNERNPAKYKPYSWGKFITHRKLSNFKKLSTENIQIYHFKVS 355    
Match NameStatsDescription
A0A5J5B962E-Value: 4.354e-48, PID: 70.29(Uncharacterized protein {ECO:0000313|EMBL:KAA8538... [more]
A0A5B7AJN6E-Value: 0.000e+0, PID: 70.45(Putative 2-oxoglutarate and Fe(II)-dependent oxyg... [more]
A0A6I9U3B5E-Value: 0.000e+0, PID: 71.84(protein DMR6-LIKE OXYGENASE 1 {ECO:0000313|RefSeq... [more]
A0A2P5FZ51E-Value: 0.000e+0, PID: 72.01(Isopenicillin N synthase {ECO:0000313|EMBL:POO030... [more]
A0A834YA28E-Value: 0.000e+0, PID: 69.54(Uncharacterized protein {ECO:0000313|EMBL:KAF8377... [more]
A0A5J5BVT7E-Value: 0.000e+0, PID: 70.37Fe2OG dioxygenase domain-containing protein {ECO:0... [more]
A0A068TMF8E-Value: 0.000e+0, PID: 70.86Fe2OG dioxygenase domain-containing protein {ECO:0... [more]
M5VMX5E-Value: 1.054e-180, PID: 69.58Fe2OG dioxygenase domain-containing protein {ECO:0... [more]
A0A834ZMI9E-Value: 1.203e-180, PID: 70.45(Uncharacterized protein {ECO:0000313|EMBL:KAF8409... [more]
A0A6J5VSM4E-Value: 1.255e-180, PID: 69.58Fe2OG dioxygenase domain-containing protein {ECO:0... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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