XM_017380283.1

Resource Type: 
Polypeptide
Name: 
XM_017380283.1
Identifier: 
XM_017380283.1-protein
Sequence: 
MIPSSEDNATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGH
RCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLC
YLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVN
LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFL
KKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISK
LSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARPV
NNGWAAGRLNSTVAGEENFVLSSNRVIRQ
Sequence Length: 
329
Sequence Checksum: 
e11c64c5039593b038a446b72c79a846
View location in JBrowse: 
DCARv2_Chr1:21989124..21996619-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017380283.1, derives from mRNA, XM_017380283.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022PYV4 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 270/324 (83.33%), Postives = 298/324 (91.98%), Query Frame = 0
 
Query:    5 SEDNATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARPVNNGWAAGRLNSTVAGEENFVLSSNRVIR 328
            +E ++   PTV IN L+FTYPGIDGHPPPGS PLI+DFSL+L PG RCL VG+NGAGKTTILKI+GGKHMVD DMVRV+GRSAFHDT+LISS  L YLGGEWRREVAFAGF++PIQMD+SAEKMIYGV+GV PQRRDELIKVLDV+LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FLKK+CEERG+TIIYATHIFDGLE+WPSHIVYVAHGKLQLA PM+E+K+ S LSLMRTVESWLRKERDE RK+RKERKA GLPE E +VDG+RV G PAR +NNGWAAGRLNST+AGEENFVLSSNRV+R
Sbjct:    2 AEISSKPQPTVAINKLKFTYPGIDGHPPPGSAPLIEDFSLSLFPGDRCLFVGSNGAGKTTILKIIGGKHMVDPDMVRVLGRSAFHDTALISSGDLSYLGGEWRREVAFAGFEIPIQMDVSAEKMIYGVTGVLPQRRDELIKVLDVDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLKKECEERGSTIIYATHIFDGLENWPSHIVYVAHGKLQLAKPMNEIKEASNLSLMRTVESWLRKERDEDRKIRKERKANGLPEHEKRVDGSRVTGGPARVINNGWAAGRLNSTIAGEENFVLSSNRVLR 325
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061ER40 ((Non-intrinsic ABC protein 9 {ECO:0000313|EMBL:EOY07515.1}))

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 270/324 (83.33%), Postives = 299/324 (92.28%), Query Frame = 0
 
Query:   10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 329
            ++ PTV IN LRFTYPGIDGHPPPGS PLI DFSLTLN G+RCLLVG+NGAGKTTILKI+GGKHMV+  MVRV+GRSAFHDT L SS +LCYLGGEWRR+VAFAGF+VPIQMDISAEKMI+GV+G+DP+RR ELIKVLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WPSHIVYVAHGKLQLAMPMDEVK+IS LSLMRTVESWLRKERDE R+ RKERKA GLPEFE+Q++G+RV GDPA    R +NNGWAAGRL+STVAGEENF+ SSNRV+RQ
Sbjct:    5 SSKPTVEINGLRFTYPGIDGHPPPGSAPLIDDFSLTLNAGNRCLLVGSNGAGKTTILKIMGGKHMVEPHMVRVLGRSAFHDTVLASSGELCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPKRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLHFLRKECEERGATIIYATHIFDGLEKWPSHIVYVAHGKLQLAMPMDEVKEISNLSLMRTVESWLRKERDEERQKRKERKAHGLPEFENQIEGSRVTGDPARAAVRALNNGWAAGRLHSTVAGEENFLFSSNRVLRQ 328
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BU49 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})

HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0
Identity = 271/323 (83.90%), Postives = 295/323 (91.33%), Query Frame = 0
 
Query:   10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIR 328
             +  TVVINNLRFTYPGIDG+PPPGS PLI +FSLTLNPG RCLLVG+NGAGKTTILKILGGKHMV+ DMVRV+GRSAFHDT+L SS  LCYLGGEWRREVAFAGF+VPIQMD+SAEKMI+GVSG+DPQRR ELIKVLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERG TIIYATHIFDGLE WPSHIVYVAHGKLQLAMPMD+VK+IS  SLMRTVE+WLRKERDE RK RKERKA GLPEFE Q +G RV GDPA    R +NNGWAAGRL+ST+AGEENFVLSSNRV+R
Sbjct:    6 NSNTTVVINNLRFTYPGIDGYPPPGSIPLIDNFSLTLNPGDRCLLVGSNGAGKTTILKILGGKHMVEPDMVRVLGRSAFHDTALTSSGDLCYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVSGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGGTIIYATHIFDGLEDWPSHIVYVAHGKLQLAMPMDKVKEISNRSLMRTVENWLRKERDEDRKRRKERKADGLPEFEKQFEGNRVAGDPARAAVRALNNGWAAGRLHSTIAGEENFVLSSNRVLR 328
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D6N324 ((CCR4-NOT complex subunit CAF16 {ECO:0000313|EMBL:QCE07241.1}))

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 269/332 (81.02%), Postives = 299/332 (90.06%), Query Frame = 0
 
Query:    1 MIPSSEDNATATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARP----VNNGWAAGRLNSTVAGEENFVLSSNRVIR 328
            M  +   + +   T+VI +L+FTYPGIDGHPPPGS PLIQDFSLTL    RCLLVG+NGAGKTTILKILGGKH+V+ DMVRV+GRSAFHDT+L+SS  LCYLGGEWRR+VAFAGFDVPIQMD+SAEKMI+GV+G+DPQRR ELIKVLD++LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WP+HIVYVAHGKLQLAMPM++VK+ISKLSLMRTVESWLRKERDE R+ RKERKA GLPEF  QV+G+RV GDPAR      NNGWAAGRLNSTVAGEENF+LSSNRV+R
Sbjct:    1 MAGNGTHSDSKAATIVIKDLKFTYPGIDGHPPPGSSPLIQDFSLTLGSADRCLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFDVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTHIVYVAHGKLQLAMPMEKVKEISKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFGKQVEGSRVTGDPARAAVRVTNNGWAAGRLNSTVAGEENFILSSNRVLR 332
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835INX3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9621406.1}))

HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 268/319 (84.01%), Postives = 297/319 (93.10%), Query Frame = 0
 
Query:   14 TVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDP----ARPVNNGWAAGRLNSTVAGEENFVLSSNRVIR 328
            T+VI+NLRFTYPGIDGHPPPGS PLI++FSL+LN G RCLLVG+NGAGKTTILKILGGKHMVD  MVRV GRSAFH T+LISS  LCYLGGEWRR+VAFAGFD+PIQMDI+AEKMI+GVSG+DPQRR ELIKVLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL+FLKK+C+ERGATIIYATHIFDGLE+WPSHIVYVAHGKLQLAMPMD+VK+IS LSLMRTVE WLRKERDE RK RKERKA GL EF+DQ+DG+RVIG P    AR +NNGWAAGRL+ST+AGEENF+LSSNRV+R
Sbjct:    7 TIVIDNLRFTYPGIDGHPPPGSTPLIENFSLSLNAGERCLLVGSNGAGKTTILKILGGKHMVDPHMVRVFGRSAFHHTALISSGVLCYLGGEWRRDVAFAGFDIPIQMDIAAEKMIFGVSGIDPQRRTELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLNFLKKECQERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEISNLSLMRTVECWLRKERDEDRKRRKERKASGLSEFKDQIDGSRVIGGPAQNSARALNNGWAAGRLHSTIAGEENFLLSSNRVLR 325
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0S3SQR4 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 266/324 (82.10%), Postives = 297/324 (91.67%), Query Frame = 0
 
Query:   10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 329
            +   T+VI +L+FTYPGIDGH PPGS PLIQ+FSLTL  G RCLLVG+NGAGKTTILKILGGKH+V+ DMVRV+GRSAFHDT+L+SS  LCYLGGEWRR+VAFAGFDVPIQMD+SAEKMI+GV+G+DPQRR +LIKVLD++LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WP+HIVYVAHGKLQLAMPMD+VK+ISKLSLMRTVESWLRKERDE R+ RKERKA GLPEF  +++G+RV GDPA    R  NNGWAAGRLNSTVAGEENF+LSSNRV+RQ
Sbjct:   10 SKAATIVIKDLKFTYPGIDGHSPPGSSPLIQNFSLTLGSGDRCLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFDVPIQMDVSAEKMIFGVAGIDPQRRADLIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTHIVYVAHGKLQLAMPMDKVKEISKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFGKKIEGSRVTGDPARAAIRATNNGWAAGRLNSTVAGEENFILSSNRVLRQ 333
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0L9TY78 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 266/324 (82.10%), Postives = 297/324 (91.67%), Query Frame = 0
 
Query:   10 TATPTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 329
            +   T+VI +L+FTYPGIDGH PPGS PLIQ+FSLTL  G RCLLVG+NGAGKTTILKILGGKH+V+ DMVRV+GRSAFHDT+L+SS  LCYLGGEWRR+VAFAGFDVPIQMD+SAEKMI+GV+G+DPQRR +LIKVLD++LSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WP+HIVYVAHGKLQLAMPMD+VK+ISKLSLMRTVESWLRKERDE R+ RKERKA GLPEF  +++G+RV GDPA    R  NNGWAAGRLNSTVAGEENF+LSSNRV+RQ
Sbjct:   10 SKAATIVIKDLKFTYPGIDGHSPPGSSPLIQNFSLTLGSGDRCLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFDVPIQMDVSAEKMIFGVAGIDPQRRADLIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTHIVYVAHGKLQLAMPMDKVKEISKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFGKKIEGSRVTGDPARAAIRATNNGWAAGRLNSTVAGEENFILSSNRVLRQ 333
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G5D3C9 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 267/319 (83.70%), Postives = 294/319 (92.16%), Query Frame = 0
 
Query:   15 VVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARPV----NNGWAAGRLNSTVAGEENFVLSSNRVIRQ 329
            + I NLRFTYPGIDGHPPPGS PLI +FSL+L  G RCLLVG+NGAGKTTILKILGGKHMV+ +MVRV+GRSAFHDT+L SS  LCYLGGEWRR+VAFAGFDVPIQMD+ AEKMIYGVSGVDPQRRDELIKVLD++LSWR+HK SDGQRRRVQICMGLLKP+KVLLLDEITVDLDVLARADLL+FLKK+C+ERGATIIYATHIFDGLE+WPSH+VYVAHGKLQLAMPMD++K+ S LSLMRTVESWLRKERDE RK RKERKA GLPEFED+VDG RVIGDPAR V    NNGWAAGRL+ST+ GEENF+LSSNRV+RQ
Sbjct:   15 IEIKNLRFTYPGIDGHPPPGSTPLIDNFSLSLQSGERCLLVGSNGAGKTTILKILGGKHMVEPNMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFDVPIQMDVGAEKMIYGVSGVDPQRRDELIKVLDIDLSWRMHKASDGQRRRVQICMGLLKPYKVLLLDEITVDLDVLARADLLTFLKKECQERGATIIYATHIFDGLENWPSHMVYVAHGKLQLAMPMDKIKETSNLSLMRTVESWLRKERDEDRKRRKERKASGLPEFEDKVDGRRVIGDPARSVPPVLNNGWAAGRLHSTIKGEENFILSSNRVLRQ 333
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AQF3 ((ABC transporter I family member 20 isoform X1 {ECO:0000313|RefSeq:XP_021289437.1}))

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 267/321 (83.18%), Postives = 296/321 (92.21%), Query Frame = 0
 
Query:   13 PTVVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPA----RPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 329
            PTV IN LRFTYPGIDGHPPPGS PLI DFSLTLN G RCLLVG+NGAGKTTILKILGGKHMV+  MVRV+GRSAFHDT L SS +LCYLGGEWRR+VAFAGF++PIQMDISAEKMI+GV+G+DP+RR ELIKVLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEERGATIIYATHIFDGLE WPSHIVYV+HGKLQLAMPMD+VK+IS LSLMRTVESWLRKERD+ R+ RKERKA GLPEFE+Q++G+RV GDPA    R +NNGWAAGRL+STVAGEENF+ SSNRV+RQ
Sbjct:    8 PTVEINGLRFTYPGIDGHPPPGSTPLIDDFSLTLNAGDRCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTGLASSGELCYLGGEWRRDVAFAGFEIPIQMDISAEKMIFGVAGIDPKRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLHFLRKECEERGATIIYATHIFDGLEKWPSHIVYVSHGKLQLAMPMDKVKEISNLSLMRTVESWLRKERDKERQKRKERKACGLPEFENQIEGSRVTGDPARAAVRALNNGWAAGRLHSTVAGEENFLFSSNRVLRQ 328
[Close]
BLAST of XM_017380283.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6DJ22 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})

HSP 1 Score: 561.222 bits (1445), Expect = 0.000e+0
Identity = 263/315 (83.49%), Postives = 292/315 (92.70%), Query Frame = 0
 
Query:   15 VVINNLRFTYPGIDGHPPPGSKPLIQDFSLTLNPGHRCLLVGANGAGKTTILKILGGKHMVDQDMVRVMGRSAFHDTSLISSAQLCYLGGEWRREVAFAGFDVPIQMDISAEKMIYGVSGVDPQRRDELIKVLDVNLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKDCEERGATIIYATHIFDGLESWPSHIVYVAHGKLQLAMPMDEVKKISKLSLMRTVESWLRKERDEARKVRKERKAKGLPEFEDQVDGTRVIGDPARPVNNGWAAGRLNSTVAGEENFVLSSNRVIRQ 329
            + IN LRFTYPGIDGHPPPGSKPLI +FSLTLN G RCLLVG+NGAGKTTILKILGGKHMV+  MVRV+GRSAFHDT+L SS  LCYLGGEWRR+VAFAGF+V IQMDISAEK+I+GV+G+DPQRR EL+KVLD++LSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL FL+K+CEE+GATIIYATHIFDGLE WPSHIVYVA G LQLAMPMD+VK+ISKLSLMRTVESWLRKE+DE RK+RKERK +GLPEFED++DG+RV G P R VNNGWAAGRLNSTVAGE+NFV SSNRV+RQ
Sbjct:  425 IEINGLRFTYPGIDGHPPPGSKPLIDNFSLTLNSGDRCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVAIQMDISAEKLIFGVAGIDPQRRAELLKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEEKGATIIYATHIFDGLEDWPSHIVYVAKGTLQLAMPMDKVKEISKLSLMRTVESWLRKEQDEERKIRKERKERGLPEFEDKIDGSRVAGGP-RAVNNGWAAGRLNSTVAGEDNFVYSSNRVLRQ 738
Match NameStatsDescription
A0A022PYV4E-Value: 0.000e+0, PID: 83.33ABC transporter domain-containing protein {ECO:000... [more]
A0A061ER40E-Value: 0.000e+0, PID: 83.33(Non-intrinsic ABC protein 9 {ECO:0000313|EMBL:EOY... [more]
A0A5J5BU49E-Value: 0.000e+0, PID: 83.90ABC transporter domain-containing protein {ECO:000... [more]
A0A4D6N324E-Value: 0.000e+0, PID: 81.02(CCR4-NOT complex subunit CAF16 {ECO:0000313|EMBL:... [more]
A0A835INX3E-Value: 0.000e+0, PID: 84.01(Uncharacterized protein {ECO:0000313|EMBL:KAF9621... [more]
A0A0S3SQR4E-Value: 0.000e+0, PID: 82.10ABC transporter domain-containing protein {ECO:000... [more]
A0A0L9TY78E-Value: 0.000e+0, PID: 82.10ABC transporter domain-containing protein {ECO:000... [more]
A0A2G5D3C9E-Value: 0.000e+0, PID: 83.70ABC transporter domain-containing protein {ECO:000... [more]
A0A6J1AQF3E-Value: 0.000e+0, PID: 83.18(ABC transporter I family member 20 isoform X1 {EC... [more]
A0A7J6DJ22E-Value: 0.000e+0, PID: 83.49ABC transporter domain-containing protein {ECO:000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.