Resource Type:
Polypeptide
Name:
XM_017396791.1
Identifier:
XM_017396791.1-protein
Sequence:
MDRINQLSGHLLTQPINFGIRGKHGLPRFLYLKSQLFACMKSQQTTLQVH
FLPQNLAMAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQ
TITNNCQLNPSLRYCNATPHDLDEIFKSTIVASHLCRESKNPNCVESFPK
INLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQ
IRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRF
NSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFL
PRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIE
IYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVD
EYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILF
SQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPREFEGNEVSFV
EWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSL
DEVYDVISRLHRCCVA
Sequence Length:
566
Sequence Checksum:
17a7eb286a2647b64d99be7c8a458e7b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017396791.1, derives from mRNA, XM_017396791.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4Z7Z1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 323/506 (63.83%), Postives = 407/506 (80.43%), Query Frame = 0
Match: A0A5J4Z7Z1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 323/506 (63.83%), Postives = 407/506 (80.43%), Query Frame = 0
Query: 58 MAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPR-EFEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHR 562
MA I++ F + I+S SF+ + +V+EDLNNL+PP +F TITNNC NPSLRYCN+TP DL EIFKS+IVASHLC +S NPNCVESFPKI+LR PK+A LYLSF+FFWKYCPLTI+ ID+++NSL G FPSD+FHC+QI+ LDLSHN+LSG+ PIQNFSLL NLT LN+SYN+FSET+ISD QF KRFNSSSF+HSGLLPDH KFKIKA++LL FP+ +I+ VV WLCFWRPDFLP + RRK++FT +MLKA T+GFSK NLV +S IY+GVLRDG+ VRIEIY SREN + FV+EC LV+LCH+NLVQV+GWC++R+L+A VTEW+D ++EMWLS AP WK+RV +LMGIVEGMSYL WPEV YDLKTSSIL S++++P+ISRFRVE+ +S T+ IY+FGV +LEMV NRRPR EFE E FVEWV +YP N ++V+DE++ +A H +D ATE + LGLMC + ++G+Q SL ++ ISR+++
Sbjct: 1 MASISANCLFFLSILS-ISFTLILSATVIEDLNNLQPPSDFNTTITNNCLSNPSLRYCNSTPSDLPEIFKSSIVASHLCNQSNNPNCVESFPKIDLRSHPKVALLYLSFTFFWKYCPLTILSIDLANNSLNGNFPSDIFHCSQIQALDLSHNDLSGDFPIQNFSLLTNLTFLNLSYNHFSETRISDTQFFKRFNSSSFLHSGLLPDHGKFKIKAIILLFGFPIYIIVMVVCFGWLCFWRPDFLPGVLRRKHRFTLSMLKAATNGFSKKNLVGKSDAVGIYKGVLRDGTEVRIEIYWDKISRENHQIFVKECEKLVQLCHKNLVQVMGWCNNRKLRATVTEWIDGESIEMWLSRLAPPWKHRVKILMGIVEGMSYLHGEWPEVGYDLKTSSILLSEDQQPLISRFRVEDQNSSTKNIYRFGVFLLEMVANRRPREEFERGEAGFVEWVRMHYPENMQKVMDERMKKARHMVDQATELITLGLMCVDVSRGRQQSLGQISKTISRIYK 505
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DT39 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 332/510 (65.10%), Postives = 406/510 (79.61%), Query Frame = 0
Match: A0A4S4DT39 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 332/510 (65.10%), Postives = 406/510 (79.61%), Query Frame = 0
Query: 66 FFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYC-NATPHDLD--EIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLL-NNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQN-EEPMISRFRVEEHHSCT-RKIYKFGVLVLEMVTNRRPR-EFEGNEVSFVEWVTEYYPGN---SEEV--IDEKLSR-AGHDLDHATEALELGLMCTE-TTQGQQPSLDEVYDVISRLH 561
F+ L +SS S F+ +VVEDLNNL PPP+F TI NNC+ PSLRYC N TP LD EIFK TIVASHLC ESKNPNC+ESFPKI+LR+RPKIAPLYLSF+FFWK+CPLTI+ ID+++NSL+G FPSD+FHC+QI+ LDLSHN LSG+VPIQN S++ NLT LN+SYN+FSE KISD +FLKRFNSSSF++SGL+PDH KFKIKA+LLL FP+ +I VV L WLCF+RPDFLPR+F+RK+KFTP+MLKA T+GFSK NLV +S + IY+G+LRDGS VRIE Y + SRE RR FVEEC+VLV L H+NLVQV+GWCD RRL+AVV EW++ NVEMWLS +AP WK RV +LM IVE M YLQE WP+V YDLKTSSIL ++ E +ISRFRVE+ + CT +K+ K GVLVLEMVTNRRPR EFE E FVEWV Y N +E+V IDE++ + H LD ATEA+ LGLMCT+ +++G+QPSLD++ D+I+ L+
Sbjct: 14 FYTTLSISS---SVTFSATVVEDLNNLNPPPDFNTTIVNNCKNQPSLRYCKNVTPLGLDLPEIFKFTIVASHLCNESKNPNCIESFPKIDLRNRPKIAPLYLSFTFFWKFCPLTILSIDLANNSLKGNFPSDIFHCSQIQALDLSHNNLSGDVPIQNLSMVVTNLTYLNLSYNHFSEIKISDTKFLKRFNSSSFLYSGLIPDHKKFKIKALLLLFGFPIFMIFMVVFLCWLCFYRPDFLPRIFQRKHKFTPSMLKAATNGFSKKNLVAKSDQLHIYKGLLRDGSEVRIETYWENISREERRNFVEECKVLVRLSHKNLVQVVGWCDHRRLRAVVAEWIEGENVEMWLSRSAPPWKKRVKMLMRIVEAMRYLQEEWPQVGYDLKTSSILLPEDHREALISRFRVEDQNGCTNKKVNKLGVLVLEMVTNRRPREEFESGEAGFVEWVRMNYTNNTYVAEKVSLIDERMKKMTQHTLDQATEAIGLGLMCTDLSSRGRQPSLDQISDMITTLY 520
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5N0T9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 301/512 (58.79%), Postives = 396/512 (77.34%), Query Frame = 0
Match: A0A2H5N0T9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 301/512 (58.79%), Postives = 396/512 (77.34%), Query Frame = 0
Query: 55 NLAMAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNAT-PHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRP-REFEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCC 564
+LAMA I+ T I ++SS S + +VVEDLNNL PPP+F TI NNC NPSL+YCN++ P DL+EIFKSTIVASHLC ESKNPNCVESFPKI+LR RPKI PLYLSF+FFWKYCPL I+ ID+S+NSL+G FP+DV CTQI+ LDLS+N+LSG++P+++FS+L NLT LN+SYN+FSE K+SD +F +RFNSSSF+HSGL P H+ + IKAV+LL+ FP+ VIL + WLCF RPDFLPRM RR +KFT MLKA T+GFSK NLV ++ IY+G+LRDG+ V+IEIYK SRE R +F+EEC++LV+ H+NL++VLGW +SRR +A+VTEW + NVE+WLS +AP WK+R+ VL+G+VE M YLQE WPEVDYDL+T S+L + N EP+ISRF++E H T+ +YKFG+ +LEM+TNRRP EFE E F+E++ +YP N + V+DE++ + D A + L LGLMCT+ G+ PSL ++Y++I+R ++ C
Sbjct: 56 SLAMASISET-IHIFFLISSLQVSPTLSATVVEDLNNLHPPPDFNSTIMNNCIHNPSLKYCNSSSPMDLNEIFKSTIVASHLCNESKNPNCVESFPKIDLRSRPKITPLYLSFNFFWKYCPLGIMSIDLSNNSLKGAFPTDVLLCTQIQALDLSYNQLSGDIPVESFSVLANLTFLNLSYNHFSEMKVSDTKFFQRFNSSSFLHSGLFPGHHNYTIKAVILLVGFPIFVILMISCTGWLCFVRPDFLPRMLRRNHKFTTWMLKAATNGFSKKNLVGKNEGAAIYKGILRDGTLVKIEIYKGDVSREIRDEFIEECKLLVQFQHKNLIRVLGWNNSRRTRAIVTEWTNGGNVELWLSESAPSWKHRLKVLIGVVEAMCYLQEQWPEVDYDLRTGSVLLTDNLEPLISRFKIEYQHRSTKYVYKFGLFLLEMITNRRPLEEFERGEAGFIEYIRMHYPENLQLVVDERMMLTENMFDQAEQGLGLGLMCTDQPTGKLPSLVQIYNMITRAYKSC 566
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UID1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 301/512 (58.79%), Postives = 394/512 (76.95%), Query Frame = 0
Match: V4UID1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 301/512 (58.79%), Postives = 394/512 (76.95%), Query Frame = 0
Query: 55 NLAMAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNAT-PHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRP-REFEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCC 564
+LAMA I+ T I ++SS S + +VVEDLNNL PPP+F TI NNC NPSL+YCN++ P DL+EIFKSTIVASHLC ESKNPNCVESFPKI+LR RPKI PLYLSF+FFWKYCPL I+ ID+S+NSL+G FP+DV CTQI+ LDLS+N+LSG++P+++FS+L NLT LN+SYN+FSE K+SD +F + FNSSSF+HSGL P H+ + IKAV+LL+ FP+ VIL + WLCF RPDFLPRM RR +KFT MLKA T+GF K NLV ++ IY+G+LRDG+RV+IEIYK SRE R +FVEEC++LV+ H+NL++VLGW +SRR +A+VTEW + NVE+WLS +AP WK+R+ VL+G+VE M YLQE WPEVDYDL+T S+L + N EP+ISRF++E H T+ +YKFG+ +LEM+TNRRP EFE E F+E++ +YP N + V+DE++ + D A + L LGLMCT+ G+ PSL ++Y++I+R + C
Sbjct: 56 SLAMASISET-IHIFFLISSLQVSPTLSATVVEDLNNLHPPPDFNSTIMNNCIHNPSLKYCNSSSPMDLNEIFKSTIVASHLCNESKNPNCVESFPKIDLRSRPKITPLYLSFNFFWKYCPLGIMSIDLSNNSLKGAFPTDVLLCTQIQALDLSYNQLSGDIPVESFSVLANLTFLNLSYNHFSEMKVSDTKFFQHFNSSSFLHSGLFPGHHNYTIKAVILLVGFPIFVILMISCTGWLCFVRPDFLPRMLRRNHKFTTWMLKAATNGFLKKNLVGKNEGAVIYKGILRDGTRVKIEIYKGDVSREIRDEFVEECKLLVQFQHKNLIRVLGWNNSRRTRAIVTEWTNGGNVELWLSESAPSWKHRLKVLIGVVEAMCYLQEQWPEVDYDLRTGSVLLTDNLEPLISRFKIEYQHRSTKYVYKFGLFLLEMITNRRPLEEFERGEAGFIEYIRMHYPENLQLVVDERMMLTENMFDQAEQGLGLGLMCTDQPTGKLPSLVQIYNMITRAYESC 566
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6Q6M0 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 307/511 (60.08%), Postives = 401/511 (78.47%), Query Frame = 0
Match: A0A2P6Q6M0 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 307/511 (60.08%), Postives = 401/511 (78.47%), Query Frame = 0
Query: 58 MAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCN-ATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMW-LSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNE-EPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPR-EFEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCC 564
MA I++T F I+L S S S+ + SV++DL LKPP +F TI NC NPSLRYC+ ++P DLDEIFKSTIVASHLC ESKNPNCVESFPK++LR RP IAPLYLSF+FFWKYCPL+I+ ID+S+ SL+ FP DV HCTQI+ LD+SHNEL G++PI+NFS L NLT+LN+SYN+FSE+KISD F K+FN SSF+HSGL+PDH KF+IKA++LLI FP+ VIL V L WLCF RPDFLPRMFRRK++FTPAMLKA T+GFS++NL+ +SA DIY+G+LRDG VRIE+Y SRE+ + +EEC+VLV+LCH+NLV +LGWCD+R+L+A+VTEW++ N+E W L S+ W YR+ +LMG+VEGM YLQE WPEV YDL+TSSI+ +P ISRF+V S +R++Y+FGV +LEM+ NRRP+ EFE E F+E++ +YPGN E++ID K+ + +D A +A+ LGLMCTE + +QPSL++V+D++SR ++ C
Sbjct: 1 MASISAT-FVILLFTISFSVSTTLSASVIDDLKRLKPPQDFNSTIMKNCLQNPSLRYCSTSSPMDLDEIFKSTIVASHLCNESKNPNCVESFPKVDLRSRPNIAPLYLSFNFFWKYCPLSILSIDLSNTSLKSNFPIDVLHCTQIQSLDMSHNELYGDLPIENFSALTNLTVLNLSYNHFSESKISDTLFFKKFNCSSFLHSGLIPDHKKFRIKAIVLLIGFPIFVILKVCCLWWLCFHRPDFLPRMFRRKHRFTPAMLKAATNGFSRNNLMWKSASVDIYKGILRDGIDVRIEVY----SRESHPQVIEECKVLVQLCHKNLVNLLGWCDNRKLRAIVTEWMEGENLESWLLGSSFTPWNYRLRILMGVVEGMCYLQEQWPEVGYDLRTSSIMLCNYSLDPKISRFKVGNQSSSSRRMYRFGVFLLEMMVNRRPQEEFERGEAGFIEYIKMHYPGNLEQLIDPKMELTQNTVDQAKQAISLGLMCTEVSSNRQPSLEQVFDIVSRAYQSC 506
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M3W9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 312/492 (63.41%), Postives = 392/492 (79.67%), Query Frame = 0
Match: A0A6A4M3W9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 312/492 (63.41%), Postives = 392/492 (79.67%), Query Frame = 0
Query: 80 AFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYC-NATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDA-QFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIY--KSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPRE-FEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCCVA 566
+ SV+EDLNNL PPP+F T++NNC+ NPSLRYC N TP L EIFK TIVASHLC ESKNPNC++SFP+INL++RPKIAPLYLSF FFWKYCPLT+ ID+S+NSL+G FPSD+F+C+QI+ LDLS N SGE+PIQNFS+L NLT LN+SYN SE++ISD+ Q KRFNSSSF+HSG++PD KFKIKA+L LI+FP+ V L V+ W+CF RPDFLP++ RRK+KFTP+MLKA T+GFSK NLV +S IY+GVLRDG+ +RIE Y + SRE RR FVEEC+VLV+LCH+NLVQVLGWCD+RRL+AVVTEW++ +VE W+S P WK+RV VLM +VEGM YLQE WPEV Y+LK+S+IL + EP+ISRFRVE+ SC++K+YKFGVL+LEMVTNR PR+ FE E FVEWV +YP N +IDEK R LD AT+A+ELGLMCT+ ++G QPSLD+++D ++ ++ +A
Sbjct: 28 TLSASVIEDLNNLHPPPDFNTTVSNNCKTNPSLRYCINFTPLSLPEIFKFTIVASHLCXESKNPNCIDSFPEINLQNRPKIAPLYLSFDFFWKYCPLTVSSIDLSNNSLKGNFPSDIFYCSQIQSLDLSQNHFSGEIPIQNFSVLTNLTFLNLSYNSXSESEISDSDQLFKRFNSSSFMHSGIIPDKEKFKIKALLFLIVFPIFVPLVVIFHCWICFSRPDFLPKLLRRKHKFTPSMLKAATNGFSKKNLVAKSEXXRIYKGVLRDGTEIRIETYLDNNKISREKRRDFVEECKVLVKLCHKNLVQVLGWCDNRRLRAVVTEWIEGESVEXWVSRVDPPWKHRVKVLMRVVEGMRYLQEEWPEVGYELKSSNILLGEEREPLISRFRVEDQSSCSKKVYKFGVLLLEMVTNRSPRQGFERGEAGFVEWVRMHYPDN---LIDEKRKRKEGTLDQATQAIELGLMCTDLSRGMQPSLDQMFDNLTAIYNSILA 516
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CHS2 ((Putative ATP binding protein {ECO:0000313|EMBL:KAF5733613.1}))
HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 295/520 (56.73%), Postives = 398/520 (76.54%), Query Frame = 0
Match: A0A7J7CHS2 ((Putative ATP binding protein {ECO:0000313|EMBL:KAF5733613.1}))
HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 295/520 (56.73%), Postives = 398/520 (76.54%), Query Frame = 0
Query: 48 QVHFLPQNLAMAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPRE-FEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCCVA 566
Q F+ +AMA I++T F+ I S ++VEDLNNL PPP+F TIT NC NPSLRYCN++P DL++IFKSTIVASHLC ESKNPNCVESFPKI+L+++PKI PLYLSF+FFWKYCPLTI+ IDIS+NS++G FP ++ CTQI+ LDLSHN L+GEVPIQ+ LNNLT+LN+SYN+FSE+KISDA F +RFN+S I SG+LP+H + IKAV+LLILFP+ +ILFV WLCF RPD+LPRMF+R++KFTP+M+++ T+ FS+ N V + DIYRG L DG+ VRIEIY SR+NRRKFVEEC+VLV+ CH+N+VQV+GWCD++RL+A+VTEW D VEMWLS TAP W +R+ V+ G+++GM YL+E WPEV+YDL+TSS+L S N EP+ISRF+V +C +KIYK G+ +LE++ NRRP E F+ E F++ + +YPG+ ++VIDE++ + + ++ A + LGLMC + + + PSL ++++IS+ + C+A
Sbjct: 41 QFEFMKDTIAMASISATFSFLFFIRLSV------YATLVEDLNNLHPPPDFNSTITTNCLNNPSLRYCNSSPEDLNDIFKSTIVASHLCNESKNPNCVESFPKIDLKNKPKIVPLYLSFNFFWKYCPLTILTIDISNNSMKGSFPLEILQCTQIQVLDLSHNGLTGEVPIQSLFPLNNLTVLNLSYNHFSESKISDAYFFERFNASCVIQSGILPNHRNYTIKAVILLILFPISLILFVGCFGWLCFVRPDYLPRMFQRRHKFTPSMIESITNEFSRRNAVAKGEGVDIYRGSLGDGTEVRIEIYNDGISRDNRRKFVEECKVLVQFCHKNIVQVMGWCDNQRLRAIVTEWTDGETVEMWLSDTAPPWTHRLKVMKGVLDGMCYLEEQWPEVEYDLRTSSVLLSSNVEPLISRFKVGNRSNCAKKIYKVGMFLLEIIANRRPNEDFDEGEADFIQHIRRHYPGSLQKVIDERMKLSENMVNQAKNGIGLGLMCIDQSSTKHPSLSHIFNMISKAYESCLA 554
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7GUE4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 301/514 (58.56%), Postives = 394/514 (76.65%), Query Frame = 0
Match: A0A5C7GUE4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 301/514 (58.56%), Postives = 394/514 (76.65%), Query Frame = 0
Query: 56 LAMAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHS--CTRKIYKFGVLVLEMVTNRRP-REFEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCCVA 566
++MA ++S FFI + + +S SA ++VEDLNNL+PPP+F TI NNC NPSL+YCN++P DL+EIFKSTIVASHLC ESKNPNCVE+FPKI+LR+RPKI PLYLSF+FFWKYCPLTI+ ID+S+NSL+G FPSDV C QI+ LDLS N SG++P+ NFS L+NLT LN+SYN+FSE KISD+ +RFNSSSFIHSGLLP H + IK ++LL+ FPL V+L V L WLCF RPDFLPR+ R +KFT MLKA TDGF K NLV ++ IY+GVLRDG++V+IEIY+ + SREN RKFVEEC++LV++ H+NLVQVLGWC +RR++++VTEW D N+E+WL+ +AP WK+R+ +L+G+VE M Y+QE WP+V YDL TSS+L S + EP+ISRF++ + S IYKFG+L+LEM+ NRRP EFE E F+E++ +YPGN VIDE++ + D A + LGLMCT+ G+ PSLDE+Y +I +++R C+
Sbjct: 1 MSMASMSSAIFFITISLLVSSLLSA---TIVEDLNNLRPPPDFNTTIFNNCLNNPSLKYCNSSPMDLNEIFKSTIVASHLCNESKNPNCVETFPKIDLRNRPKITPLYLSFNFFWKYCPLTIMSIDLSNNSLKGIFPSDVLLCNQIQNLDLSFNHFSGDIPLLNFSYLSNLTNLNLSYNHFSELKISDSNLFQRFNSSSFIHSGLLPSHQNYTIKTIILLVGFPLFVVLSVGCLGWLCFARPDFLPRVLNRNHKFTTWMLKAATDGFLKKNLVMKNVGVSIYKGVLRDGTKVKIEIYRDNVSRENLRKFVEECKILVQMRHKNLVQVLGWCSNRRMRSLVTEWTDGENIELWLAGSAPSWKHRLKILIGVVESMFYMQEQWPQVGYDLSTSSVLLSDHLEPLISRFKIGDRRSNYTANYIYKFGLLLLEMIANRRPSEEFERGEAGFIEYIRMHYPGNLRVVIDERMKLTENTFDQAKLGIGLGLMCTDQKAGKIPSLDEIYHMIVKVYRSCLV 511
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6GB59 ((L-type lectin-domain containing receptor kinase S.1 {ECO:0000313|RefSeq:XP_015900678.1}) (L-type lectin-domain containing receptor kinase S.1-like {ECO:0000313|RefSeq:XP_024931377.1}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 303/505 (60.00%), Postives = 396/505 (78.42%), Query Frame = 0
Match: A0A6P6GB59 ((L-type lectin-domain containing receptor kinase S.1 {ECO:0000313|RefSeq:XP_015900678.1}) (L-type lectin-domain containing receptor kinase S.1-like {ECO:0000313|RefSeq:XP_024931377.1}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 303/505 (60.00%), Postives = 396/505 (78.42%), Query Frame = 0
Query: 58 MAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMWLSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPR-EFEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLH 561
MA I++T + LI STSF + SV+EDL NL PPP+F TI NC PSLRYCN++P D EIFKSTIVASHLC ESKNPNCVE+FPKI+LR+RP +APLYLSFSFFWKYCPL+I+ ID+S++SL+G FP DV HCTQI+ LDLS NELSG+V I +FS L NLT+LN+S N F+E++ISD++F KRFNSSSFIHSGLLPDH KFKIK V+ L+ FP+ VIL V WLC RPDFLPR+ + K++FTP++LKA T+GFSK NLV +S DIYRG LRDG+ VRIEIY+ SR++ RKFVEEC+VLV+LCH+NLVQVLGWC++RRL+A+VTEWV+ NVEMWL+ + P W++R+ +LM +VEG+ YL+E WPEV YDL+T+S+L S + EP+ISRF+V + +S TR+I KFGV +LE++ NRRP+ EF+ E FVE++ +YPGN ++V+DEK+ D A +AL LGLMCT+ ++ +Q +++++IS ++
Sbjct: 1 MASISAT-LSLFLITISTSFYITLSPSVIEDLKNLTPPPDFNSTIQTNCFKTPSLRYCNSSPMDFAEIFKSTIVASHLCNESKNPNCVETFPKIDLRNRPLLAPLYLSFSFFWKYCPLSILSIDMSNSSLKGNFPVDVLHCTQIQVLDLSLNELSGDVDIVSFSTLANLTVLNLSCNQFTESRISDSEFFKRFNSSSFIHSGLLPDHKKFKIKFVIFLVGFPIFVILMVGCFGWLCLHRPDFLPRILQTKHRFTPSILKAATNGFSKKNLVLKSEAVDIYRGTLRDGTEVRIEIYRDDISRDDCRKFVEECKVLVQLCHKNLVQVLGWCNNRRLRAIVTEWVEGKNVEMWLAVSNPPWQHRLRLLMEVVEGVCYLEEIWPEVGYDLRTNSVLLSNDLEPLISRFKVGDQNSSTRRICKFGVFLLEIIANRRPQDEFKTGEAGFVEYIRMHYPGNLQKVMDEKMKLTEITFDQAKQALGLGLMCTDNSRNRQLCFGQIFNIISSVY 504
BLAST of XM_017396791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498JV70 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 309/509 (60.71%), Postives = 389/509 (76.42%), Query Frame = 0
Match: A0A498JV70 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 309/509 (60.71%), Postives = 389/509 (76.42%), Query Frame = 0
Query: 58 MAFINSTPFFIILIVSSTSFSSAFAGSVVEDLNNLKPPPNFKQTITNNCQLNPSLRYCNATPHDLDEIFKSTIVASHLCRESKNPNCVESFPKINLRDRPKIAPLYLSFSFFWKYCPLTIVVIDISHNSLRGEFPSDVFHCTQIRRLDLSHNELSGEVPIQNFSLLNNLTMLNISYNYFSETKISDAQFLKRFNSSSFIHSGLLPDHNKFKIKAVLLLILFPLVVILFVVLLSWLCFWRPDFLPRMFRRKYKFTPAMLKAETDGFSKSNLVRRSAKTDIYRGVLRDGSRVRIEIYKSSASRENRRKFVEECRVLVELCHENLVQVLGWCDSRRLKAVVTEWVDEYNVEMW-LSSTAPQWKYRVGVLMGIVEGMSYLQEGWPEVDYDLKTSSILFSQNEEPMISRFRVEEHHSCTRKIYKFGVLVLEMVTNRRPRE-FEGNEVSFVEWVTEYYPGNSEEVIDEKLSRAGHDLDHATEALELGLMCTETTQGQQPSLDEVYDVISRLHRCC 564
MA I++T ++L+ S S + A SV+EDL NLKPP +F TI C NPS+RYC+++P DL EIFKSTIVASHLC ESKNPNCVESFPKI+LR+RPKIAPLYLSF+FFWKYCPL+I+ ID+S+NSL FP DV CTQ++ LDLSHN+L G+VPI++FS L NLT LN+SYN+FSE+KISDA F KRFNSSSF+HSGLLP KF+IKAV+LL+ FP+ VIL V L WLCF RPDFLPRM RRKY+FTPAMLKA T+GFS+ NL +S DIYRG LRD + VRIEIY+ EN +EEC+VLV L H+NLV VLGWC++RRL+A+VTEW++ N+EMW L S W +R+ +L G+VEGM YLQE WPEV YDL+TSSIL S N EP ISRF++ + +RK+YK GVL+LEM+ NRRP+E FE E F+E++ +YPGN ++VID+KL + D A +A+ LGLMCT+ + QQ SL +V+D++SR ++ C
Sbjct: 1 MASISATSLLLLLLPISASIYTTLAASVIEDLKNLKPPHDFNSTIMKTCHHNPSIRYCSSSPVDLHEIFKSTIVASHLCNESKNPNCVESFPKIDLRNRPKIAPLYLSFNFFWKYCPLSILTIDVSNNSLESNFPIDVLQCTQLQALDLSHNDLYGDVPIESFSPLANLTSLNLSYNHFSESKISDALFFKRFNSSSFLHSGLLPHKKKFRIKAVILLVGFPIFVILMVCCLGWLCFQRPDFLPRMLRRKYRFTPAMLKAATNGFSRRNLKGKSEAVDIYRGTLRDDTEVRIEIYRG----ENHPNLIEECKVLVRLRHKNLVNVLGWCNNRRLRAIVTEWMEGENLEMWLLESNNTPWNHRLKILTGVVEGMCYLQEEWPEVGYDLRTSSILLSNNLEPRISRFKIGDQSCRSRKMYKLGVLLLEMLINRRPQEDFETGEAGFLEYIRMHYPGNLQKVIDQKLELTQNTFDQAKQAIGLGLMCTDVSSNQQLSLGQVFDIMSRAYQSC 505
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4Z7Z1 | E-Value: 0.000e+0, PID: 63.83 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A4S4DT39 | E-Value: 0.000e+0, PID: 65.10 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2H5N0T9 | E-Value: 0.000e+0, PID: 58.79 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4UID1 | E-Value: 0.000e+0, PID: 58.79 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2P6Q6M0 | E-Value: 0.000e+0, PID: 60.08 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6A4M3W9 | E-Value: 0.000e+0, PID: 63.41 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7J7CHS2 | E-Value: 0.000e+0, PID: 56.73 | (Putative ATP binding protein {ECO:0000313|EMBL:KA... [more] |
| A0A5C7GUE4 | E-Value: 0.000e+0, PID: 58.56 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6P6GB59 | E-Value: 0.000e+0, PID: 60.00 | (L-type lectin-domain containing receptor kinase S... [more] |
| A0A498JV70 | E-Value: 0.000e+0, PID: 60.71 | Protein kinase domain-containing protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |