Resource Type:
Polypeptide
Name:
XM_017386746.1
Identifier:
XM_017386746.1-protein
Sequence:
MAEECQSRRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCC
IKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQA
IPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNC
GRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVA
NIQHPGTDGSVNPEVNKVEEIDMNQMGQLSPTCTDSLGDMNDNSCDPASS
RDAKRQKKSSSEHGGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFS
NGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGC
FQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSA
IHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFAST
CGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKA
CKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSG
DFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPV
QPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPFF
Sequence Length:
649
Sequence Checksum:
d07050a604a319ed1656a89f9eab6743
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386746.1, derives from mRNA, XM_017386746.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AMK6 ((Putative BRCA1-associated RING domain protein 1 {ECO:0000313|EMBL:MPA57584.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 341/753 (45.29%), Postives = 435/753 (57.77%), Query Frame = 0
Match: A0A5B7AMK6 ((Putative BRCA1-associated RING domain protein 1 {ECO:0000313|EMBL:MPA57584.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 341/753 (45.29%), Postives = 435/753 (57.77%), Query Frame = 0
Query: 1 MAEECQSRRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSG-TFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNKVEEIDMNQMGQLS-------------------PTCTD------------------SLGDMNDN-SCDPAS--SRDAKRQKK--------------------------------------------------SSSEHGGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKF-------------RKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGS-STTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA+ R LNPW+LHLQKL LELKCPLCL LL +P+LLPC+HIFCN CI TST+FGSECP C+ +YAD+++R P ME++V+IYRSLDAT TL Q + K + PVSV + + + + +GNSS+G + FPL A + N S E+E + KS P Q K EV+G + + + + H +V E EEI+MNQ+ Q S P C+D S +MND S P +RD KRQKK SS+ VCAFC SS +TD TG M+HY NGK G N I+VHK CI+WTPQ YY G+ ++NLE+E+AR++KLKC++CG+KGA LGCF SCR+SYH PCA+ + CRWD +D+L+ CP+H + KFP E+SK RK A K ++ I KQ+NFWA+S G K+W+LCGSALS EEK L KFAS CGAT+S+ W+PNVTHVIA+ DA GA +RTLKVLMAIL+G+W++ +DWIKAC E P+DE E LD HGC GPK+GRL+ L NAPKLF+G+ FYF GDF AYK DL +LV AGG+V++ KEQL S + +TTLVVYNVDP Q + ++ LQR AE+LA E G QV+ H W+LESIAAC L PF
Sbjct: 1 MADSQSHARFLNPWVLHLQKLGLELKCPLCLNLLNRPMLLPCNHIFCNFCIPTSTQFGSECPVCKEQYADRDIRPVPHMENIVTIYRSLDATFSTTLVQPVSSDAGKVPERHPVSVNTNVNDKLSKESVETPQEGNSSNGQSIFPLAANKRVQASPNHSVEDEIKFTVKFGKSTLPITGQMKEFEVHGGERVLHDECKSIPPQSHVWVR-AVKHEKFGTEEINMNQVAQSSPGSPPSFGETRSVDDDNSDPPCSDGNKEKLLAKRLVDNNPDSSGCEMNDKPSLGPKDDHARDIKRQKKLNYGLLDMGVKSDCHAQSIGLHSENAATCDFTLEHKFGEPLSGAQKAVTTDSSDANKSVCAFCQSSMITDRTGAMMHYINGKEAVGDAATHPNVIHVHKKCIEWTPQAYYVGETVKNLEAEVARAAKLKCSSCGIKGAALGCFVHSCRKSYHVPCALDLY-CRWDCEDFLVLCPIHYSAKFPSEKSKRSKEANFPSEKSKSRKDAKKKEHTVLTQITLKQSNFWAASPCGAKEWLLCGSALSAEEKYLLVKFASICGATVSKFWDPNVTHVIAATDAEGACSRTLKVLMAILNGKWILRIDWIKACMEAMHPMDELPCEVSLDNHGCCDGPKTGRLRALNNAPKLFNGLKFYFCGDFLRAYKKDLLHLVATAGGAVIENKEQLVARSDEVHATPTTTLVVYNVDPPQGCQFGE-DAFALQRKEVAEDLAEEIGSQVIGHTWLLESIAACKLQPF 750
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C9H2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550722.1}))
HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 346/754 (45.89%), Postives = 440/754 (58.36%), Query Frame = 0
Match: A0A5J5C9H2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550722.1}))
HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 346/754 (45.89%), Postives = 440/754 (58.36%), Query Frame = 0
Query: 1 MAEECQSRRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNK-LNQVDADGNSSSG-TFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNKVEEIDMNQMGQLS-------------------PTC-----------------TDSLG-DMNDNSC---DPASSRDAKRQKK--------------------------------------------------SSSEHGGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERS------KF-------RKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGS-STTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA+ R LNPW+LHLQKL LELKCPLCL LL +P+LLPC+HIFCN CI ST+FGSEC C +YAD+++R AP+ME++V+IYRSLDAT +LFQ++ K Q P SV ++VN NK + +GNSS+G + F L +K + S E+ S + Q EV G + ++ +G +I P + G + + E+IDMNQ+ Q S P C TD G +MND S + +RD KRQKK SS+ +CAFC SS +TD TG M+HY NGK G V SN I+VHK CI+WTPQVYY G+ ++NLE+E+AR+SKLKC++CG+KGA LGCF KSCR+SYH PCA+ + CRWD +D+L+ CP H + KFP E S KF RK A K ++ I+ K+ NFWA S G K+W+LCGSALS EEK L KFAS CGAT+S+ W PNVTHVIA+ DA GA +RTLKVLMAIL+G+W++ +DWI+AC E PVDEE YE LD HGC GPK+GRL+ L NAPKLF+G+ FYF GDF PAYK+DL +LV AGG+V++ KEQL S Q + S LVVYN+DP Q + KG + L+R AE LA E G QV+ H W+LESIAAC L PF
Sbjct: 1 MADSQSYARFLNPWVLHLQKLGLELKCPLCLNLLNRPMLLPCNHIFCNFCIPRSTQFGSECLVCNQQYADRDIRPAPYMENMVTIYRSLDATFGTSLFQSVSSDAGKVSEQCPASVN-TNVNDKLNKGPVETLQEGNSSNGQSIFSLASKKRVQASPTHSVEDRIRFTGKFENSMSLITGQMNKFEVCGGEQAL---NGECKSIP-PESSGWMRAVKHGTEKIDMNQVAQSSPGSPPSFGETRSIDDDTSDPHCSNDNKEKHPAKRLVENDTDRAGCEMNDKSSLGPEDDHARDIKRQKKLNYGLPEMGVKSDCHTQLIGLHAENAATYDFTLKHKLEEPLSGAQKAIITVSSDANKSICAFCQSSRITDRTGPMLHYVNGKEAMGDVATHSNVIHVHKKCIEWTPQVYYVGETVKNLEAEVARASKLKCSSCGIKGAALGCFVKSCRKSYHVPCALDLY-CRWDCEDFLVLCPTHYSAKFPSEMSTSRKVAKFQSEKPMSRKDANKKEHTMLTQISLKKPNFWAGSPLGAKEWLLCGSALSSEEKYLLVKFASICGATVSKFWKPNVTHVIAATDAEGACSRTLKVLMAILNGKWILRIDWIRACMEAMHPVDEESYEVSLDNHGCCNGPKTGRLRVLNNAPKLFNGLYFYFCGDFLPAYKEDLLDLVITAGGTVIENKEQLVARSHEVQATHSAILVVYNLDPPQGCQLVKG-AFALERKAAAENLADEIGSQVIGHTWLLESIAACNLQPF 747
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X560 ((protein BREAST CANCER SUSCEPTIBILITY 1 homolog {ECO:0000313|RefSeq:XP_009781615.1}))
HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 323/687 (47.02%), Postives = 424/687 (61.72%), Query Frame = 0
Match: A0A1U7X560 ((protein BREAST CANCER SUSCEPTIBILITY 1 homolog {ECO:0000313|RefSeq:XP_009781615.1}))
HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 323/687 (47.02%), Postives = 424/687 (61.72%), Query Frame = 0
Query: 1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK-------------ISSVNGTKNKLNQVDADGNSSSGTF-FPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGV-----------QDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNK---VEEIDMNQMG----QLSPTCTDSLGDMNDN---SCDPASSRDAKRQKKSSSEH--GGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLA-TLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA E QS R LNP H+QKL LELKCPLCL LL +P+LLPCDHIFCN C+ ST+ EC C+ +Y ++E+R+ P MES+++I+RSLDAT +FQ L QSP+SV I S N ++N+ + G +G LL + + L + + + +++ V+ +PG + + V D A V + H +G V+ V EE D+ + +LS T S N + +C + S + K S +H G VCAFCH+S++T+ TG M+HYANG+ V G V S I VH CIDW PQVYY+GD +RNLE+ELAR++KLKC+ CGLKGA LGC KSCRRSYH PCA +I CRWD D+++M CP HK+VKFP E+SK RK A +A +APIA ++ NFW +S G K+WVLCGSALS EEK + KFA+ CGAT+ ++WNPNVTHVIA+ D GA TRTLKVLMAIL G+W++T+DWIKAC N PV+EE YE LD HGC+ GPK+GRL+ NAPKLF G FY SGD+ AYK DL +LV GGS++ TKEQL + +S+ LVVYN+DP + + ++V+L R AE+LA + GCQV++H WIL+SIAAC L PF
Sbjct: 1 MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQCECLVCKHQYVNEEIRAVPHMESMIAIFRSLDATFNAKVFQFQSPDAGTTLEQSPISVNADDKSRNEQSVKAIVSSNDPNKEINRRNGHGIPWNGVNNLSLLPSSDRKADLKNERNDAEEIDLNQVQQQSPGSSHSSDNNKDIVKETSELRVRNNDIKSHIAKRSVEDSSHV-VEGLVHHAVKHEHVFEERDVKRQKKLSYELSETILQSHATANSDCTLACKLSESSLVAQPKAVSDQHLPKGSVCAFCHTSKITEGTGPMLHYANGREVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDTLRNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPSHKSVKFPSEKSKSRKRASMEACPKSAPIASERLNFWETSSDGPKEWVLCGSALSPEEKYMMVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIAANCPVNEEPYEVNLDNHGCFGGPKAGRLRASSNAPKLFDGFKFYLSGDYVAAYKKDLLDLVEKGGGSIIHTKEQLIYQIGPMQTTNSSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDLAKQIGCQVIQHTWILQSIAACKLEPF 686
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSE6 ((BRCA1-associated RING domain protein {ECO:0000313|EMBL:PSS14046.1}))
HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 335/734 (45.64%), Postives = 428/734 (58.31%), Query Frame = 0
Match: A0A2R6QSE6 ((BRCA1-associated RING domain protein {ECO:0000313|EMBL:PSS14046.1}))
HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 335/734 (45.64%), Postives = 428/734 (58.31%), Query Frame = 0
Query: 1 MAEECQSRRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLN-QSPVSVKISSVNGTKNKLNQVDADGNSSSG--TFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNKVEEIDMNQMGQLSPTCTDSLGDMNDNSCDPAS-------------------------------------SRDAKRQKKS--------------------------------------------SSEHGGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGS-STTLVVYNVDP-VQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA+ R LNPW+LH QKL LELKCPLCL L +PVLLPC+HIFC+ C+ ++FGSECP C +Y D +VR AP+ME+LVSI+R L+A+ +LFQ + E++ QSPV + + NG K + + +GNSS+G TF + R LN S EE K +TP V K E+ DG G+ Q+PG PE + Q+ +SP D+ G ++ +S DP S +RDAKRQKKS S + +CAFC S +TD TG M+HY NGK V G S+ I+ HKICI+WTPQ Y+ G+ ++NL++E+AR++KLKC++CGLKGA LGC KSCR+SYH PCAI+I GCRWDF+D+LM CP H +VKFP E+ K RK K + I KQ N W +S G ++WV CG+ALS EEK L+KFAS CGAT+S+ W PNVTHVIA+ DANGA +RTLKVL AIL+GRWV+ +WIKAC E +PVDEE YE LD HGC GPK+GRL+ L N KLF+ +NFYFSGDF P YK+DL +LV AGG+V+K+KEQL S + + S TLVVYN DP +Q +++ SVVLQR AE LA G V+ H W+LESIAAC L PF
Sbjct: 1 MADASNHARFLNPWVLHHQKLGLELKCPLCLNLFNRPVLLPCNHIFCDFCVPRLSQFGSECPVCARRYEDLDVRPAPYMENLVSIFRGLEASFSASLFQPVTLFDEERAPLQSPVLLNTNVDNGLKESV-ETPQEGNSSNGECTFSLTTSNKRVRAPLNYSIEEGKS------DKSTPN-VIGKSEEIKVCDG------GKTKPPQYPGWARGAKPEDQVL------QLSPVSPPSFDTKG-LDGDSSDPGSRNNSSGKDPAKRLHENNSSKTGDDVKESTSPGAEVDHARDAKRQKKSMCNTGEPSNGCTEANVFHSKSIATSKLEPRVGELSGKKAPTTPDSCDASDSICAFCQSFALTDRTGPMLHYVNGKEVVGDAVTNSSVIHAHKICIEWTPQAYFVGETVKNLKAEVARAAKLKCSSCGLKGAALGCLVKSCRKSYHVPCAIEIVGCRWDFEDFLMLCPSHSSVKFPCEKFKSRKHTSEKQHFMPNAITSKQTNVWRASANGGREWVFCGAALSTEEKYLLSKFASICGATVSKFWKPNVTHVIAATDANGACSRTLKVLKAILNGRWVLKTEWIKACMEAMQPVDEEPYEVGLDNHGCHDGPKTGRLRALDNESKLFNDLNFYFSGDFIPGYKEDLLDLVITAGGTVIKSKEQLVAQSRDSRTTHSATLVVYNNDPAMQGGRLEEEGSVVLQRIEAAENLAIGIGSPVIAHTWLLESIAACKLQPF 713
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4BX85 ((BRCA1-associated RING domain protein 1 {ECO:0000313|RefSeq:XP_016493384.1}))
HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0
Identity = 319/687 (46.43%), Postives = 422/687 (61.43%), Query Frame = 0
Match: A0A1S4BX85 ((BRCA1-associated RING domain protein 1 {ECO:0000313|RefSeq:XP_016493384.1}))
HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0
Identity = 319/687 (46.43%), Postives = 422/687 (61.43%), Query Frame = 0
Query: 1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK-------------ISSVNGTKNKLNQVDADGNSSSG-TFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGV-----------QDKHMEVNGLDGSVFNADGRVANIQHPGTDGSVNPEVNK---VEEIDMNQMG----QLSPTCTDSLGDMNDN---SCDPASSRDAKRQKKSSSEH--GGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLA-TLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA E QS R LNP H+QKL LELKCPLCL LL +P+LLPCDHIFCN C+ ST+ ECP C+ +Y +QE+R+ P +ES+++I+RSLDAT +FQ Q P+SV I S N ++N+ + G +G + LL + + L + + +++ ++ +PG + + V D A V + H +G V+ + EE D+ + +LS T S N + +C + S + K S +H G VCAFCH+S++T+ TG M+HYANG+ V G V S I VH CIDW PQVYY+GD +RNLE+ELAR++KLKC+ CGLKGA LGC KSCRRSYH PCA +I CRWD D+++M CP HK+VKFP E+SK RK A +A +API ++ NFWA+S G K+WVLCGSALS EEK + KFA+ CGAT+ ++WNPNVTHVIA+ D GA TRTLKVLMAIL G+W++T+DWIKAC N PV EE YE LD HGC+ GPK+GRL+ NAPKLF G FY SGD+ AYK DL +LV GGS++ +KEQL + +S+ LVVYN+DP + + ++V+L R AE+LA + GCQV++H WIL+SIAAC L PF
Sbjct: 1 MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQCECPVCKHQYVNQEIRAVPHVESMIAIFRSLDATFNAKVFQFKSPDAGWSSEQYPISVNLDDKSRNEQTVKAIVSSNDPNKEINRCNGHGIPWNGVSHLSLLPSSDRKADLKNERNIAEEIDLNQLQQQSPGSSHSSDNNKDIVKETSELRVRNNDIKSHTAKMSVEDSSHV-VEGLVHHTIKHEHVFEERDLKRQKKLSYELSETVLQSHAITNSDRSLACKLSESSLVAQPKAVSDQHLPKGSVCAFCHTSKITEGTGPMLHYANGREVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDTLRNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPSHKSVKFPSEKSKSRKRASMEACPESAPITSERLNFWATSSDGPKEWVLCGSALSSEEKYMMVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIGANCPVIEEPYEVSLDNHGCFGGPKAGRLKASSNAPKLFDGFKFYLSGDYVAAYKKDLLDLVEKGGGSIIHSKEQLIYQIGSMKATNSSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDLAKQIGCQVIQHTWILQSIAACKLEPF 686
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GC44 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937531.1}))
HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 332/748 (44.39%), Postives = 429/748 (57.35%), Query Frame = 0
Match: A0A7J7GC44 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937531.1}))
HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 332/748 (44.39%), Postives = 429/748 (57.35%), Query Frame = 0
Query: 1 MAEECQSRRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQ--------------------EVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGNSSSGTFFPLLAKNCG-RNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVANIQHPG-TDGSVNPEVNKVEEIDMNQMGQLSPTCTDSLG--DMNDNSCDPAS----------------------------------SRDAKRQKK--------------------------SSSEHGGG---------------VCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQV-LKHIWILESIAACTLHPF 648
MA+ R LNPW+LH QKL LELKCPLCL LL +P LLPC+HIFC+ C+ T+FGSECP C+ +Y+D+ + R AP+ME+LV+IYRSL+AT +LFQ++ + QSPVS+K + N +K + + +GNSS+G L N R LN S EE L + KS + ++ VF+ ++ + + G G+ N E+ EID+NQ+ QLSP S+ D+ND+S DP S +RD KRQKK S E+ G +CAFC S +TD TG M+HY NGK VAG ++ I+VHKICI+WTPQ Y+ G+ ++NL++E+AR+SKLKC++CGLKGA LGCF SCR+SYH PCA++I GCRWDF+D+LM CP H +VKFP E+SK K A K + A KQ+NFW +S G+K WV CGSALS EEK L KFA+ CGAT+S+ W PNVTHVIA+ DA GA +RTLKVL AIL+GRW++ DWIKAC E +PVDEE YE LD HGC GP++GRL+ L N PKLF+G+NFYF+GDF P YKDDL +LV AGG+V+++KEQL ++ SVVLQR AE L E G QV + H W+LESIAA L PF
Sbjct: 1 MADASNYARFLNPWVLHHQKLGLELKCPLCLNLLNRPTLLPCNHIFCDSCVPRLTQFGSECPVCKQQYSDRVILSFGPNWALTQWDLCATVDARPAPYMENLVAIYRSLEATFSASLFQSLTSDAGRVPLQSPVSLKTNVDNQSKESV-ETPQEGNSSNGQCISSLTANKRVRASLNHSVEEGNKLTGKSDKSTLLTTSNVEKFQMRDAGEVVFHGGDKLVSPHYFGWARGATNEEL-VTPEIDINQVLQLSPVSPPSVDAKDVNDDSSDPGSRNDSTEKHPAKRSVENNSNDKAGGDRTSPSAGDHTRDVKRQKKLNYGLFDMGVKIDGCTQPNVAVSKLESKFENLSGAKASTISDLCDANKSICAFCQCSGLTDRTGPMLHYVNGKEVAGDAATNTSAIHVHKICIEWTPQAYFVGETVKNLKAEVARASKLKCSSCGLKGAALGCFVNSCRKSYHVPCAVEIIGCRWDFEDFLMLCPSHSSVKFPREKSKNGKHASEKQHFVPAETTSKQSNFWGASPNGVKKWVFCGSALSAEEKYLLVKFANICGATVSKFWKPNVTHVIAATDAKGACSRTLKVLKAILNGRWILKTDWIKACMEAMQPVDEEPYEVSLDNHGCCDGPRTGRLRVLNNVPKLFNGLNFYFTGDFIPGYKDDLLDLVITAGGTVIESKEQL---------------------------EEEGSVVLQRLEVAERLGDEIGSQVIIAHTWLLESIAASKLQPF 719
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6JB20 ((Brca1-associated ring domain protein 1 {ECO:0000313|EMBL:OIT06903.1}))
HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 322/689 (46.73%), Postives = 422/689 (61.25%), Query Frame = 0
Match: A0A1J6JB20 ((Brca1-associated ring domain protein 1 {ECO:0000313|EMBL:OIT06903.1}))
HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 322/689 (46.73%), Postives = 422/689 (61.25%), Query Frame = 0
Query: 1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK-------------ISSVNGTKNKLNQVDADGNSSSGT-FFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVAN-----------IQHPG--TDGSVNPEVNK---VEEIDMNQMG----QLSPTCTDSLGDMNDN---SCDPASSRDAKRQKKSSSEH--GGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLA-TLSCAGQGSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA E QS R LNP H+QKL LELKCPLCL LL +P+LLPCDHIFCN C+ ST+ ECP C+ Y +QE+R+ P +ES+++I+RSLDAT +FQ QSPVSV I S N ++N+ + G +G LL + + L + + +++ ++ +PG H N D ++ RV N I+ +G V+ + EE D+ + +LS T S N + +C + S + K S++H G VCA CH+S++T+ TG M+HYANGK V G V S I VH CIDW PQVYY+GD +RNLE+ELAR++KLKC+ CGLKGA LGC KSCRRSYH PCA +I CRWD D+++M CP HK+VKFP E+SK RK A +A +API ++ NFWA+S G K+WVLCGSALS EEK + KFA+ CGAT+ ++WNPNVTHVIA+ D GA TRTLKVLMAIL G+W++T+DWIKAC N PV EE YE LD HGC+ GPK+GRL+ NAPKLF G FY SGD+ AYK DL +LV GGS++ TKEQL + +++ LVVYN+DP + + ++V+L R AE+LA + GCQV++H WIL+SIAAC L P
Sbjct: 1 MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQCECPVCKHHYVNQEIRAVPHVESMIAIFRSLDATFNAKVFQLKSPDAGWSSEQSPVSVNADDKLRNEQSVKVIVSSNDPNEEINRCNGHGIPWNGVNHLSLLPSSDRKADLKNERNIAEEIDLNQLQQQSPGS---SHSSDNNKDIVKETSELRVRNNDIKSHTAKMSIEDSSLVVEGPVHHTIKHEHVFEERDVKRQKKLSYELSETVLQSHAIANSDCSIACKLSESSLVAQPKAVSNQHLPKGSVCALCHTSKITEGTGPMLHYANGKEVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDNLRNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPSHKSVKFPSEKSKSRKRASMEACPESAPITSERLNFWATSSDGPKEWVLCGSALSSEEKYMMVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIGANCPVIEEPYEVSLDNHGCFGGPKAGRLRASSNAPKLFDGFKFYLSGDYVAAYKKDLLDLVEKGGGSIIHTKEQLIYQIDSMNATNTSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDLAKQIGCQVIQHTWILQSIAACKLEPI 686
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2B330 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 326/703 (46.37%), Postives = 427/703 (60.74%), Query Frame = 0
Match: A0A6N2B330 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 326/703 (46.37%), Postives = 427/703 (60.74%), Query Frame = 0
Query: 1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVKI------SSVNGTKNKLNQVDADGNSSSGTFFP---------LLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGV------QDKHMEVNGLDGSVFNADGRVAN---------IQHPGTDGSVNPEV---NKVEEIDMNQMGQLS-----------------PTCTDSLGDMNDN-SCDPASSRDAKRQKKSSSEH--GGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTT-LVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA E QS R LNP H+QKL LELKCPLCL LL +P+LLPCDHIFCN C+ +ST+ ECP C+ +Y DQE+R+ P MES++SI+RSLDAT +FQ + L QSPVSV SV TK + N + + P L + + ++ ND E+ +++I + +PG +D E + L NA R+ + +G ++ V N E D+ + +LS +C+ + + + N +C + S ++ S +H G CAFC S++T+ TG M+HYANG+ V G S I VH CIDW PQVYY+G+ I+NLE+ELAR+SKLKC+ CGLKGA LGC KSCRRSYH PCA ++ CRWD D+++M CP HK+VKFP E+SK RK A +A A I ++ NFWA+S G K+WVLCGSALS EEK L KFA+ CGAT+ +SWNP+VTHVIA+ D GA TRTLKVLMAIL G+W++T+DWIKAC + N PV+EE YE LD HGC+ GPK GRL+ NAPKLF G+ FY SGD PAY+ DL +LV AGGS++ TKEQL + + A Q +S+ LVVY+ DP + + +++LQR AEELA GCQV++H WILESIA C L PF
Sbjct: 1 MAAEAQSIARFLNPLAFHIQKLGLELKCPLCLNLLTKPMLLPCDHIFCNFCVPSSTQVQCECPLCKHQYVDQEIRAVPHMESMISIFRSLDATCNAKVFQLQSPDAGRPLEQSPVSVNADKSRYEQSVKATK-RSNDPSKEIQRHNEHGMPWNVVNHLSVLPSSDRKKDSKNDGYNAEE-IDLIQFQQQSPGSAHSSDSNKDIVKETSELRVMKTNAAKRLVEDSSDVVPFLKKEDSIEGLMHHTVVHENVFHERDVKRQKKLSYGLPEMALQSHDHNQQRESCSRIIANSDCNLTCKLSESSFVAHPQEVSDQHLLEGSACAFCLKSKITEGTGPMLHYANGREVVGDATSLSEAIPVHMKCIDWAPQVYYDGEIIKNLEAELARASKLKCSGCGLKGAALGCLVKSCRRSYHMPCAFEMQNCRWDTDNFVMLCPSHKSVKFPSEKSKSRKRANIEARPEPASITSERLNFWATSSDGPKEWVLCGSALSSEEKYMLVKFANVCGATVCKSWNPSVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACVQENYPVNEEAYELSLDNHGCFGGPKIGRLRASSNAPKLFDGLKFYLSGDCVPAYRTDLLDLVENAGGSIIHTKEQLISQTVATQTTSSACLVVYSSDPPRGCEFGEERNILLQRQANAEELAKPLGCQVIQHTWILESIATCKLVPF 701
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7GSA2 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})
HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 318/703 (45.23%), Postives = 427/703 (60.74%), Query Frame = 0
Match: A0A3Q7GSA2 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})
HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 318/703 (45.23%), Postives = 427/703 (60.74%), Query Frame = 0
Query: 1 MAEECQS-RRQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQ-------------AIPCGGEKKLNQSPVSVKISSVNGTKNKLNQVDADGN--SSSGTFFPLLAKNCGRNVLNDSAEEEKMLNMIAVKSATPGGVQD--------------KHMEVNGLDGSVFNADGRVANIQHPGT-DGSVNPEV---NKVEEIDMNQMGQLS-----------------PTCTDSLGDMNDN-SCDPASSRDAKRQKKSSSEH--GGGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQ-GSSTTLVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
MA E QS R LNP H+QKL LELKCPLCL LL +P+LLPCDHIFCN C+ +ST+ ECP C+ +Y DQE+R+ P MES++SI+RSLDAT +FQ + +K N+ V I + N ++ + + G + L + + ++ ND E+ +++I + +PG + M+ N V ++ V ++ + +G ++ N E D+ + +LS +C+ + + + N +C + S ++ S +H G CAFC S++T+ TG M+HYANG+ V G S I VH CIDW PQVYY+G+ I+NLE+ELAR+SKLKC+ CGLKGA LGC KSCRRSYH PCA ++ CRWD D+++M CP HK+VKFP E+SK RK A +A + API ++ NFWA+S G K+WVLCGSALS EEK L KFA+ CGAT+ +SWNP+VTHVIA+ D GA TRTLKVLMAIL G+W++T+DWIKAC + N PV+EE YE LD HGC+ GPK GRL+ NAPKLF G+ FY SGD+ PAY+ DL +LV AGGS++ TKEQL + + A Q SS LVVY+ DP + + +++LQR AEELA GCQV++H WILESIA C L PF
Sbjct: 1 MAAEAQSIARFLNPLAFHIQKLGLELKCPLCLNLLTKPMLLPCDHIFCNFCVPSSTQVQCECPLCKHQYVDQEIRAVPHMESMISIFRSLDATCNAKVFQFQSPDAGRPLEQSPVSVNADKSRNEQTVKATIRN-NDPSKEIQRHNEHGMPWNVVNHLSVLPSSDRKKDSKNDGYNAEE-IDLIQFQQQSPGSAHSSDSNKDIVKETSELRVMKTNAAKRLVEDSSDVVPFLKKEDSFEGLMHHTAMHENVFHERDVKRQKKLSYGLPEMALQSHDHNQQRESCSRIIANSDCNLTCKLSESSFVAHPQEVSDQHLLEGSACAFCLKSKITEGTGPMLHYANGREVVGDATSLSKAIPVHMKCIDWAPQVYYDGEIIKNLEAELARASKLKCSGCGLKGAALGCLVKSCRRSYHMPCAFEMQNCRWDTDNFVMLCPSHKSVKFPSEKSKSRKRANIEARTEPAPITSERLNFWATSSDGPKEWVLCGSALSSEEKYMLVKFANVCGATVCKSWNPSVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACVQENYPVNEEAYELSLDNHGCFGGPKIGRLRASSNAPKLFDGLKFYLSGDYVPAYRTDLLDLVENAGGSIIHTKEQLISQTVATQTASSACLVVYSSDPPRGCEFGEERNILLQRQANAEELAKPLGCQVIQHTWILESIATCKLVPF 701
BLAST of XM_017386746.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2Z7B2 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})
HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 307/696 (44.11%), Postives = 416/696 (59.77%), Query Frame = 0
Match: A0A2G2Z7B2 (RING-type E3 ubiquitin transferase BRCA1 {ECO:0000256|ARBA:ARBA00017222})
HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 307/696 (44.11%), Postives = 416/696 (59.77%), Query Frame = 0
Query: 9 RQLNPWLLHLQKLALELKCPLCLELLRQPVLLPCDHIFCNCCIKTSTKFGSECPSCQSKYADQEVRSAPFMESLVSIYRSLDATTVNTLFQAIPCGGEKKLNQSPVSVK------------ISSVNGTKNKLNQVDADGN--SSSGTFFPLLAKNCGRNVLNDSAEEEKM-LNMIAVKSATPGGVQDKHMEVNGLDGSVFNADGRVAN-------------------------IQHPGTDGSVNPEVNKVEEIDMN----QMG--------QLSPTCTDSLGDMNDN-SCDPASSRDAKRQKKSSSEHG--GGVCAFCHSSEVTDETGEMIHYANGKLVAGSVKPFSNGIYVHKICIDWTPQVYYEGDYIRNLESELARSSKLKCTACGLKGAGLGCFQKSCRRSYHAPCAIKISGCRWDFDDYLMTCPVHKTVKFPGERSKFRKSAIHKAESIAAPIAPKQANFWASSVTGLKDWVLCGSALSYEEKCYLAKFASTCGATISRSWNPNVTHVIASIDANGAYTRTLKVLMAILHGRWVVTMDWIKACKEMNKPVDEEEYEAVLDTHGCWYGPKSGRLQTLQNAPKLFSGMNFYFSGDFFPAYKDDLQNLVTAAGGSVVKTKEQLATLSCAGQGSSTT-LVVYNVDPVQPYTMDKGNSVVLQRHRTAEELATEFGCQVLKHIWILESIAACTLHPF 648
R LNP H+QKL LELKCPLCL LL +P LLPCDHIFCN C+ +S + ECP C+ +Y D+E+R+ P MES++SI+RSLD T LFQ + L QS VSV I S N + ++N+ + G + L + N ++ +D E++ LN + +S D + ++ + + + A + H V PE + + +N +M Q +C+ + + + N +C + S ++ S +H G VCAFCH S++T+ TG M HY+ G+ V SN I VH CIDW PQVYY+GD I+NLE+ELAR++KLKC+ CGLKGA LGC KSCRRSYH PCA ++ CRWD D+++M CP HK+VKFP E+ K RK +A AP+ +++NFWA+ G K+W+LCGSALS E+K L KFA+ CGAT+ +SW+P VTHVIA+ D GA TRTLKVLMAIL G+W++T+DWIKAC + N PV+EE YE LD HGC+ GPKSGRL+ +APKLF G+ FY SG++ PAYK DL +LV AGGS++ T EQL +L+ A Q +S+ LVVYN DP + + ++++LQR AEELA GCQV++H WILESIA C + PF
Sbjct: 11 RFLNPLAFHIQKLGLELKCPLCLNLLTKPRLLPCDHIFCNFCVPSSIQAQCECPICKHQYVDEEIRAVPHMESMISIFRSLDTTFNAKLFQFQSPDSGRSLEQSNVSVNADKSRIEQSIKAILSSNDSIKEINRHNGHGMPWNVVNQLGLLPSSNRKEDIKDDRYNAEEIDLNQLQQQSPGSAHSSDSNKDIVKENSELRDVKSHTAKRLVEDSSDVVPFLKKQDTPVVSKDLVHHTVMRDDVFPERDVKRQKKLNYGLPEMALQSYDGHNQQRESCSRIISNSDHNLTCKLSESSIVAYPEEVSDQHHLEGSVCAFCHQSKITEGTGPMQHYSKGREVVVDAASLSNAIPVHMKCIDWAPQVYYDGDIIKNLEAELARAAKLKCSVCGLKGAALGCLVKSCRRSYHRPCAFELQDCRWDCDNFVMLCPSHKSVKFPSEKPKSRKRTSTEACPEPAPLTSERSNFWATLSDGPKEWILCGSALSSEQKYMLVKFANMCGATVCKSWDPRVTHVIAATDEKGACTRTLKVLMAILSGKWILTIDWIKACIQENYPVNEEPYEVNLDNHGCFGGPKSGRLRASSSAPKLFDGLKFYLSGEYVPAYKTDLLDLVEKAGGSIIHTNEQLISLTDAMQATSSACLVVYNSDPPRGCAFGEASNILLQRQAKAEELAKPIGCQVIQHTWILESIATCKMVPF 706
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AMK6 | E-Value: 0.000e+0, PID: 45.29 | (Putative BRCA1-associated RING domain protein 1 {... [more] |
| A0A5J5C9H2 | E-Value: 0.000e+0, PID: 45.89 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more] |
| A0A1U7X560 | E-Value: 0.000e+0, PID: 47.02 | (protein BREAST CANCER SUSCEPTIBILITY 1 homolog {E... [more] |
| A0A2R6QSE6 | E-Value: 0.000e+0, PID: 45.64 | (BRCA1-associated RING domain protein {ECO:0000313... [more] |
| A0A1S4BX85 | E-Value: 0.000e+0, PID: 46.43 | (BRCA1-associated RING domain protein 1 {ECO:00003... [more] |
| A0A7J7GC44 | E-Value: 0.000e+0, PID: 44.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5937... [more] |
| A0A1J6JB20 | E-Value: 0.000e+0, PID: 46.73 | (Brca1-associated ring domain protein 1 {ECO:00003... [more] |
| A0A6N2B330 | E-Value: 0.000e+0, PID: 46.37 | RING-type E3 ubiquitin transferase BRCA1 {ECO:0000... [more] |
| A0A3Q7GSA2 | E-Value: 0.000e+0, PID: 45.23 | RING-type E3 ubiquitin transferase BRCA1 {ECO:0000... [more] |
| A0A2G2Z7B2 | E-Value: 0.000e+0, PID: 44.11 | RING-type E3 ubiquitin transferase BRCA1 {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |