XM_017382064.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017382064.1

Identifier:

XM_017382064.1-protein

Sequence:

MWRALPHRSTMPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSFFSSA
SCSVERCSFASESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVD
KSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDR
RTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTS
TVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSP
VSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVEN
FMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSG
TLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKE
RHSFASSTSGVLPIVEWQDSHFPKHVRDVQVDERVTMSQWCKNSKFHTTG
EGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAK
AEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQAS
TTSHKLISFRRTRQISSLSGCFTCHAL

Sequence Length:

577

Sequence Checksum:

6b88c9f2f409599ad3aaa80707226620

View location in JBrowse:

DCARv2_Chr3:1433995..1437921+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017382064.1, derives from mRNA, XM_017382064.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z6L8 (Remorin_C domain-containing protein {ECO:0000259|Pfam:PF03763} (Fragment))

HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 356/583 (61.06%), Postives = 430/583 (73.76%), Query Frame = 0

Query:    8 RSTMPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFAS----------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            +STMPELGFQ   N  +SG   ARD SPDSVIF+ ES+F  FSSAS SV+RCSFAS          E SQH A ++  E+SS GPD  PN ST++KNS   ++V+K+KV+++D + ET+DENQ LDSARSSFSQALK+CQ RRS+ EALL+K DRR P SLDLNN++ N  +SSPR GV+KK+  +TR TGT PSPG PN+  TS  +QKGWSSERV L  + NRRHV   LLP+N+ RTLPSKWEDAERWIFSPV+GD   RPSF QP RRPK+KSGPLGPP   Y+S++SPAV +F+GG V N M  SPF+ GV+AAD LS++    + G   F    EPC+ RSVS+HGCS  L QS L  S D + D  +D   +IS  VS+RDMATQMSPE SPHSS K R S + STS  LPIVE    H  K  VRDVQVDERVT+++W K  K   TG+GS + DDWKKKA E +S+ WEVS+TA + S  KREEA+I AWENLQKAKAEA IRKLEMKLEKKRSSSM+KI+ K ++A++KA+ MRSS + + A Q + TSHK+ISFRR +QISSLSGCFTCHA 
Sbjct:    9 QSTMPELGFQDQ-NLLTSGYR-ARDFSPDSVIFTVESNFSLFSSASGSVDRCSFASDVHDHDSLVSEISQHFAGNDLPETSS-GPDPDPNRSTIHKNSCLVKKVEKAKVQKEDNEAETEDENQTLDSARSSFSQALKECQDRRSRSEALLRKPDRRRPASLDLNNSIANAINSSPRFGVMKKNSVLTRRTGTFPSPGTPNYQHTSVGIQKGWSSERVPLHANANRRHVGAALLPFNSGRTLPSKWEDAERWIFSPVAGDGLVRPSFPQPQRRPKSKSGPLGPPGIVYHSLFSPAVPLFEGGNVGNLMAGSPFSTGVMAADGLSIRCGGDHGGGGRFP---EPCMARSVSVHGCSALLSQSSLPGSQDEELDGVKDAATHISRAVSRRDMATQMSPEGSPHSSPKRRPSLSLSTSSALPIVELPSVHSSKLEVRDVQVDERVTVTRWSKKHKARFTGKGSENVDDWKKKAAEARSSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAEIRKLEMKLEKKRSSSMDKILNKLRSAQRKAQDMRSSVIANQAHQVARTSHKVISFRRAQQISSLSGCFTCHAF 585

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z911 (Remorin_C domain-containing protein {ECO:0000259|Pfam:PF03763})

HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 356/579 (61.49%), Postives = 428/579 (73.92%), Query Frame = 0

Query:   12 PELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFAS----------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            PELGFQ   N  +SG   ARD SPDSVIF+ ES+F  FSSAS SV+RCSFAS          E SQH A ++  E+SS GPD  PN ST++KNS   ++V+K+KV+++D + ET+DENQ LDSARSSFSQALK+CQ RRS+ EALL+K DRR P SLDLNN++ N  +SSPR GV+KK+  +TR TGT PSPG PN+  TS  +QKGWSSERV L  + NRRHV   LLP+N+ RTLPSKWEDAERWIFSPV+GD   RPSF QP RRPK+KSGPLGPP   Y+S++SPAV +F+GG V N M  SPF+ GV+AAD LS++    + G   F    EPC+ RSVS+HGCS  L QS L  S D + D  +D   +IS  VS+RDMATQMSPE SPHSS K R S + STS  LPIVE    H  K  VRDVQVDERVT+++W K  K   TG+GS + DDWKKKA E +S+ WEVS+TA + S  KREEA+I AWENLQKAKAEA IRKLEMKLEKKRSSSM+KIM K ++A++KA++MRSS + S A Q + TSHK+ISFRRTR+ISSLSGCFTCHA 
Sbjct:    3 PELGFQDQ-NLLTSGYR-ARDFSPDSVIFTVESNFSLFSSASGSVDRCSFASDVHDHDSLVSEISQHFAGNDLPETSS-GPDPDPNRSTIHKNSCLVKKVEKAKVQKEDNEAETEDENQTLDSARSSFSQALKECQDRRSRSEALLRKPDRRRPASLDLNNSIANAINSSPRFGVMKKNSVLTRRTGTFPSPGTPNYQHTSVGIQKGWSSERVPLHANANRRHVGAALLPFNSGRTLPSKWEDAERWIFSPVAGDGLVRPSFPQPQRRPKSKSGPLGPPGIVYHSLFSPAVPLFEGGNVGNLMAGSPFSTGVMAADGLSIRCGGDHGGGGRFP---EPCMARSVSVHGCSALLSQSSLPGSQDEELDGVKDAATHISRAVSRRDMATQMSPEGSPHSSPKRRPSLSLSTSSALPIVELPSVHSSKLEVRDVQVDERVTVTRWSKKHKARFTGKGSENVDDWKKKAAEARSSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAEIRKLEMKLEKKRSSSMDKIMNKLRSAQRKAQEMRSSVIASQAHQVARTSHKVISFRRTRRISSLSGCFTCHAF 575

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AE72 (Remorin_C domain-containing protein {ECO:0000259|Pfam:PF03763})

HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 350/580 (60.34%), Postives = 420/580 (72.41%), Query Frame = 0

Query:   11 MPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFAS----------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            MPELGFQH  N  SSG + ARDVSPDSV F+ ES+F  FSSAS SV+RCSFAS          E SQ LA H+  ESSS GPD  PN+STV+KNS   + V+K+KV+++D + E +DENQ LDSA +S SQALK+ Q RRSK+EALLK+SDRR P SLDLNN++TN TSSSPR GV+KK+    RPTGT PSPG P++  TS  +QKGWSSERV L  + NRRHV    LP+NN RTLPSKWEDAERWIFSPV+GD   R SF QP RRPK+KSGPLGPP  AYYS+YSPAV + +GG V N M  SPF+ G++ ADSLS+Q      G   F    EP I RSVS+HGCS  L QS +  S D K +  +D   +IS  VS+RDMATQMSPE SPH S + R S + ST   L IVE Q  H  K  VRDVQVDERVT+++W K  +    G+GS + D  KKKA+E + + WEVS+TA + S  KREEA+I AWENLQKAKAEAAI+KLE+KLEKKRSSSM+KI+ K ++A++KA+ MRSS + + A Q + TSHK+I FRRTRQISSLSGCFTCHA 
Sbjct:    1 MPELGFQHQ-NQHSSG-NRARDVSPDSVTFTVESNFSLFSSASGSVDRCSFASDVHDHESLASEISQRLAGHDLLESSS-GPDPEPNKSTVHKNSRLIKRVEKAKVQKEDNEEEAEDENQTLDSAINSSSQALKERQDRRSKYEALLKRSDRRRPASLDLNNSITNATSSSPRFGVMKKNSVWARPTGTCPSPGTPSYRHTSVGVQKGWSSERVPLHNNANRRHVGTASLPFNNGRTLPSKWEDAERWIFSPVAGDGLVRHSFPQPQRRPKSKSGPLGPPGIAYYSLYSPAVPLLEGGNVGNLMAGSPFSAGMMVADSLSIQ---CGGGGGGFPACREPWIARSVSVHGCSELLSQSSMPGSQDEKLEGVKDAATDISCAVSRRDMATQMSPEGSPHPSPQRRPSLSPSTPSALSIVELQSVHSSKLEVRDVQVDERVTVTRWSKKHRAQFPGKGSENVDKCKKKAVEARPSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAAIQKLEVKLEKKRSSSMDKILNKLRSAQRKAQGMRSSVLANQAHQVARTSHKIIYFRRTRQISSLSGCFTCHAF 574

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z7B8 (Remorin_C domain-containing protein {ECO:0000259|Pfam:PF03763})

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 349/580 (60.17%), Postives = 413/580 (71.21%), Query Frame = 0

Query:   12 PELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFASE-----------SSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            PELGFQ   N    G    RDVSPDSVIF+ ES+F  FSSAS SV+RCSFAS+           S +HLA H+  ESSS GPD  PN+STV KNS  S+ V+K KV+++D + ET D NQ LDS RSSFSQA+K+CQ RRS++EALL++ DRR P SLDLNN +TN TSSSPR GV+KK+      +GT PSPG PN+   S  +QKGWSSERV L  + NRRHV    LP+NN RTLPSKWEDAERWIFSP++GD  +RPSF QP RR K+KSGPLGPP  AYYS+YSPAV M +GG V N M  SPF+ GV+ AD LS+Q   G  G   F + MEPC+ RSVS+HGCS  L QS L  S D K D  +D        +S+RDMATQMSPE SP    K R S + ST     IVE Q  H  K  VRDVQVDERVT+++W K  K   TG+GS + DDWKKKA E +S+ WEVS+TA + S  KREEA+I AWENLQKAKAEA IRKLEMKLEKKRSSSM+KIM K ++A++KA++MRSS + S A Q + TSHK+ISFRRTR+ISSLSGCFTCHA 
Sbjct:    3 PELGFQDQ-NQLRLGYR-TRDVSPDSVIFTPESNFTIFSSASGSVDRCSFASDVHDHESLASEFSQEHLAGHDLPESSS-GPDPDPNKSTVLKNSCLSKRVEKGKVQKEDNEAETKDGNQTLDSERSSFSQAIKECQDRRSRYEALLRRPDRRRPASLDLNNFITNATSSSPRFGVMKKNSVSNHQSGTCPSPGTPNYRHASVGIQKGWSSERVPLHANANRRHVGAAFLPFNNGRTLPSKWEDAERWIFSPIAGDGPARPSFPQPQRRQKSKSGPLGPPGIAYYSLYSPAVPMLEGGNVGNLMARSPFSAGVMVADGLSIQCGGGRGGGGGFPECMEPCMARSVSVHGCSELLSQSSLPGSQDEKLDGDKDAA------ISRRDMATQMSPELSP----KRRPSLSPSTPSAPSIVELQSIHSSKLEVRDVQVDERVTVTRWSKKHKARFTGKGSENVDDWKKKAAEARSSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAEIRKLEMKLEKKRSSSMDKIMNKLRSAQRKAQEMRSSVIASQAHQVARTSHKVISFRRTRRISSLSGCFTCHAF 569

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EK60 ((Remorin family protein {ECO:0000313|EMBL:GFY86855.1}))

HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 330/577 (57.19%), Postives = 412/577 (71.40%), Query Frame = 0

Query:   11 MPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSFFSSASCSVERCSFAS----------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHA 576
            MPELGF+   N    G    RDVSPDSVIF+     FSSAS SV+RCSFAS          E+SQHLA H+  E+SS GPD  P +STV++NS  +R+V K+KV ++D   E  D+N+ L SAR+S SQ+LK+CQ RRS+ E +LKK +R+ P SLDLNN +TN T SSPR GV+KKS A+TR TGT  SPG PN    S  +QKGWSSERV L  + NRRH +  LLP+NN RTLPSKWEDAE+WIFSPVS D + +P F    RRPK+KSGPLGPP  AYYS++SP + M +GG V N    SPF+ GVIAAD  S++  +   G   F  R+EPC+ RSVS+HG SG L QS L    D K +  +D   NIS  VS+RDMATQMSPE S HSS + R SF+ ST  +LPIV+++     K  VRDVQVDERVTM++W K  +    G+GS + D+WKKKA+E+QS+ WEVS+ A + S  KREEA+I+AWE+LQ+AKAE+AIRKLEMKLEK RSSSM+KIM K ++ +KKA++MRSS + + ++Q S TS+K+ISF RTRQISSLSGCFTCHA
Sbjct:    1 MPELGFEDQ-NLLRPGFRN-RDVSPDSVIFT----IFSSASGSVDRCSFASDVHDHDSFASEASQHLAGHDLRETSS-GPDSDPKKSTVHRNSCLTRKVQKAKVHKEDIDAEIGDKNETLGSARNSLSQSLKECQDRRSRSEVVLKKPNRQRPASLDLNNHVTNATISSPRFGVMKKSSAMTRRTGTFLSPGTPNHRHASVGIQKGWSSERVPLHNNANRRHGSAALLPFNNGRTLPSKWEDAEKWIFSPVSADGAVKPPFQPQQRRPKSKSGPLGPPGIAYYSLHSPVLPMLEGGNVGNLDTVSPFSAGVIAADGFSIRSGVSSGGAGIFSTRIEPCMARSVSVHGFSGLLSQSLLPGPQDEKLNGDKDAATNISRAVSRRDMATQMSPEGSRHSSPRRRPSFSPSTPSILPIVKFESVQSSKLEVRDVQVDERVTMTRWSKKHRVRFPGKGSENVDNWKKKAIEVQSSAWEVSEAAKSISKMKREEAKISAWESLQRAKAESAIRKLEMKLEKSRSSSMDKIMNKLRSVQKKAQEMRSSVLTNQSRQVSKTSNKVISFHRTRQISSLSGCFTCHA 570

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QXY5 ((Remorin, C-terminal protein isoform 1 {ECO:0000313|EMBL:PSS17254.1}))

HSP 1 Score: 620.928 bits (1600), Expect = 0.000e+0
Identity = 332/577 (57.54%), Postives = 411/577 (71.23%), Query Frame = 0

Query:   11 MPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFAS-------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            M ELG +  +   S     ARD SPDSVIF AES+F  FSSAS SV RCSFAS       E SQHLA  +  E+S  GPD  PN+ST + NS   R+V+K+KV++++   E +++N+ LDSAR+SFSQ LK+CQ RRS+ E +LKKSDR  P SLDLNN  TN T++SPR GV+KK    TR  GT PSPG PN+  TS   QKGWSSERV+L T+ NR+ VN  LLP+NN RTLPSKWEDAERWIFSPVSGD   RPS  QP RRPK+KSGPLGPP  AYYS+ SP + MF+GG + N M  SPF+  V+ AD LS++   G  G   +   +EPC+ RSVS+HGCS  L  S L    D K D  +DE  +IS DVS+RDMATQMSPE S  SS + + SF+ STS VL IV+ +     K  VRDVQVDERVTM++W K  +   +G+GS + D+WKKK LE +S++WEVS  A N S  KREEA++ AWENLQKAKAEAAIRKL+MKLEKKRSSSM++I+KK ++A+KKA++MR+S + + ++Q + TS+KLISFRR   ISSLSGCFTCHA 
Sbjct:    1 MAELGLEDRNQQISRFR--ARDFSPDSVIFIAESNFSLFSSASTSVNRCSFASDRDSLVSEVSQHLAGRDLRETSG-GPDSDPNKSTGHSNSCYRRKVEKAKVQKEENDEEIENKNETLDSARNSFSQPLKECQERRSRSENILKKSDRGRPASLDLNNHTTNATNASPRFGVMKKGSGSTRQIGTFPSPGTPNYRHTSIGAQKGWSSERVSLHTNGNRKQVNAALLPFNNGRTLPSKWEDAERWIFSPVSGDGPVRPSLQQPQRRPKSKSGPLGPPGVAYYSLCSPILPMFEGGNLGNLMAGSPFSARVLGADGLSIRSGAGS-GAGIYPAHLEPCMARSVSIHGCSELLSHSSLPGPQDGKIDENKDEATDISRDVSRRDMATQMSPEGSHQSSPRRKLSFSPSTSSVLSIVQLESVQPSKLEVRDVQVDERVTMTRWSKKHRVRFSGKGSENDDEWKKKDLEAESSSWEVSKAAKNISKMKREEAKVNAWENLQKAKAEAAIRKLKMKLEKKRSSSMDRIVKKLRSAQKKAQEMRNSVLTNQSRQVARTSNKLISFRRVPHISSLSGCFTCHAF 573

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QY35 ((Remorin, C-terminal protein isoform 2 {ECO:0000313|EMBL:PSS17253.1}))

HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 332/579 (57.34%), Postives = 411/579 (70.98%), Query Frame = 0

Query:   11 MPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFAS-------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQS--PLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            M ELG +  +   S     ARD SPDSVIF AES+F  FSSAS SV RCSFAS       E SQHLA  +  E+S  GPD  PN+ST + NS   R+V+K+KV++++   E +++N+ LDSAR+SFSQ LK+CQ RRS+ E +LKKSDR  P SLDLNN  TN T++SPR GV+KK    TR  GT PSPG PN+  TS   QKGWSSERV+L T+ NR+ VN  LLP+NN RTLPSKWEDAERWIFSPVSGD   RPS  QP RRPK+KSGPLGPP  AYYS+ SP + MF+GG + N M  SPF+  V+ AD LS++   G  G   +   +EPC+ RSVS+HGCS  L  S  P     D K D  +DE  +IS DVS+RDMATQMSPE S  SS + + SF+ STS VL IV+ +     K  VRDVQVDERVTM++W K  +   +G+GS + D+WKKK LE +S++WEVS  A N S  KREEA++ AWENLQKAKAEAAIRKL+MKLEKKRSSSM++I+KK ++A+KKA++MR+S + + ++Q + TS+KLISFRR   ISSLSGCFTCHA 
Sbjct:    1 MAELGLEDRNQQISRFR--ARDFSPDSVIFIAESNFSLFSSASTSVNRCSFASDRDSLVSEVSQHLAGRDLRETSG-GPDSDPNKSTGHSNSCYRRKVEKAKVQKEENDEEIENKNETLDSARNSFSQPLKECQERRSRSENILKKSDRGRPASLDLNNHTTNATNASPRFGVMKKGSGSTRQIGTFPSPGTPNYRHTSIGAQKGWSSERVSLHTNGNRKQVNAALLPFNNGRTLPSKWEDAERWIFSPVSGDGPVRPSLQQPQRRPKSKSGPLGPPGVAYYSLCSPILPMFEGGNLGNLMAGSPFSARVLGADGLSIRSGAGS-GAGIYPAHLEPCMARSVSIHGCSELLSHSSLPGPQGTDGKIDENKDEATDISRDVSRRDMATQMSPEGSHQSSPRRKLSFSPSTSSVLSIVQLESVQPSKLEVRDVQVDERVTMTRWSKKHRVRFSGKGSENDDEWKKKDLEAESSSWEVSKAAKNISKMKREEAKVNAWENLQKAKAEAAIRKLKMKLEKKRSSSMDRIVKKLRSAQKKAQEMRNSVLTNQSRQVARTSNKLISFRRVPHISSLSGCFTCHAF 575

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CPU6 (Remorin_C domain-containing protein {ECO:0000259|Pfam:PF03763})

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 342/580 (58.97%), Postives = 418/580 (72.07%), Query Frame = 0

Query:   11 MPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSFFSSASCS--VERCSFAS----------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            M ELGFQ  S     GL GARD SPDSVIF+ ES+F   +S S  V+RCSFAS          E S HLA H+  E+SS GPDL PN++TV+K+S   R+ +K+KV ++D +VE ++EN VLDSAR+SFS ALK+CQ RRS+ EAL KK DRR P SLDLNN     TSSSPR+G +KKS A +R +GT PSPG PN+  ++  +QKGWSSERV   T+ NRRHV+  LLP+NN RTLPSKWEDAERWIFSPV+GD   +PSF  P RRPK+KSGPLGPP  AYYS+YSPA+ MF+GG   NFM  SPF+ GVIA D L++    G RG      R EPC+GRS S+HGCS  L QS LR S D K D  +D   +IS  VS+RD+ATQMSPE S  SS + + SF+ S+  VLPIVE Q  +  K  +RDVQVDERVTM++W K  +    G+GS + D WKKKA+E  S+ WEVS+TA + S  KREEA+I AWENLQKAKAEAAIRKLEMKLEKKRSSSM+KIM K ++A++KA++MRSS + + A Q S  +HK +SF +TRQ+SSLSGCFTCHA 
Sbjct:    1 MAELGFQDQS-LLRFGL-GARDASPDSVIFTQESNFSLFSSASASVDRCSFASDVHDHDSLASEVSLHLAGHDLQETSS-GPDLIPNKATVHKHSRLIRKEEKAKVLKEDKQVEAEEENLVLDSARNSFSLALKECQDRRSRSEALSKKHDRRRPASLDLNN----ATSSSPRLGGMKKSSASSRRSGTFPSPGTPNYRHSNFGIQKGWSSERVPSHTNVNRRHVSAALLPFNNGRTLPSKWEDAERWIFSPVAGDGVVKPSFPPPQRRPKSKSGPLGPPGIAYYSLYSPAIPMFEGGNAGNFMAGSPFSAGVIAPDGLAIH--CGGRGG-VMPVRTEPCMGRSASVHGCSELLNQSSLRDSRDEKFDGVKDAATDISRTVSRRDIATQMSPEGSIFSSPERKPSFSPSSPTVLPIVELQSVNSSKLEIRDVQVDERVTMTRWSKKHRGRIPGKGSENVDGWKKKAVEAHSSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQRKAQEMRSSVLANHAHQVSGNAHKAVSFCKTRQMSSLSGCFTCHAF 570

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z7R9 (Remorin_C domain-containing protein {ECO:0000259|Pfam:PF03763})

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 341/580 (58.79%), Postives = 409/580 (70.52%), Query Frame = 0

Query:   12 PELGFQHHSNSASSGLSGARDVSPDSVIFSAESSF--FSSASCSVERCSFASE-----------SSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHAL 577
            PELGFQ   N    G    RDVSPDSVIF+ ES+F  FSSAS SV+RCSFAS+           S +HLA H+  ESSS GPD  PN+STV KNS  S+ V+K KV+++D + ET D NQ LDS RSSFSQA+K+CQ RRS++EALL++ DRR P SLDLNN +TN TSSSPR GV+KK+      +GT PSPG PN+   S  +QKGWSSERV L  + NRRHV    LP+NN RTLPSKWEDAERWIFSP++GD  +RPSF QP RR K+KSGPLGPP  AYYS+YSPAV M +GG V N M  SPF+ GV+ AD LS+Q   G  G   F + MEPC+ RSVS+HGCS  L QS L  S D K D  +D        +S+RDMATQMSPE SP    K R S + ST     IVE Q  H  K  VRDVQVDERVT+++W K  +    G+GS + D+ KKK +E + + WEVS+TA + S  KREEA+I AWENLQKAKAEAA+RKLEMKLEKKRSSSM+KI+ K ++A++KA+ MRSS + + A Q + TSHK+ISFRR RQISSLSGCFTCHA 
Sbjct:    3 PELGFQDQ-NQLRLGYR-TRDVSPDSVIFTPESNFTIFSSASGSVDRCSFASDVHDHESLASEFSQEHLAGHDLPESSS-GPDPDPNKSTVLKNSCLSKRVEKGKVQKEDNEAETKDGNQTLDSERSSFSQAIKECQDRRSRYEALLRRPDRRRPASLDLNNFITNATSSSPRFGVMKKNSVSNHQSGTCPSPGTPNYRHASVGIQKGWSSERVPLHANANRRHVGAAFLPFNNGRTLPSKWEDAERWIFSPIAGDGPARPSFPQPQRRQKSKSGPLGPPGIAYYSLYSPAVPMLEGGNVGNLMARSPFSAGVMVADGLSIQCGGGRGGGGGFPECMEPCMARSVSVHGCSELLSQSSLPGSQDEKLDGDKDAA------ISRRDMATQMSPELSP----KRRPSLSPSTPSAPSIVELQSIHSSKLEVRDVQVDERVTVTRWSKKHRALFPGKGSENVDECKKKVVEARPSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAALRKLEMKLEKKRSSSMDKILNKLRSAQRKAQDMRSSVIANQAHQVARTSHKVISFRRARQISSLSGCFTCHAF 569

[Close]

BLAST of XM_017382064.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R3G5 ((Remorin, C-terminal protein {ECO:0000313|EMBL:PSS19748.1}))

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 326/579 (56.30%), Postives = 411/579 (70.98%), Query Frame = 0

Query:   11 MPELGFQHHSNSASSGLSGARDVSPDSVIFSAESSFFSSASCS--VERCSFAS----------ESSQHLAVHECGESSSSGPDLHPNESTVNKNSLKSREVDKSKVERKDTKVETDDENQVLDSARSSFSQALKDCQVRRSKFEALLKKSDRRTPTSLDLNNTLTNVTSSSPRIGVIKKSPAVTRPTGTLPSPGAPNFSQTSTVMQKGWSSERVALPTSTNRRHVNNVLLPYNNVRTLPSKWEDAERWIFSPVSGDSSSRPSFTQPHRRPKAKSGPLGPPRTAYYSMYSPAVHMFDGGIVENFMVASPFTPGVIAADSLSVQRDIGYRGNETFYDRMEPCIGRSVSLHGCSGTLCQSPLRSSDDRKHDTAEDEGKNISGDVSKRDMATQMSPEKSPHSSLKERHSFASSTSGVLPIVEWQDSHFPK-HVRDVQVDERVTMSQWCKNSKFHTTGEGSGHCDDWKKKALEIQSTNWEVSDTASNNSISKREEARIAAWENLQKAKAEAAIRKLEMKLEKKRSSSMEKIMKKFKAAEKKARKMRSSDVVSSAQQASTTSHKLISFRRTRQISSLSGCFTCHA 576
            M ELG +  +   S     ARD SPDSVIF+AES+F   +S S  V+RCSFAS          E SQHLA  +  E+   GPDL PN+ST + NS   R+V+K+KV++ +   E +++++ LDSAR+SFSQALK+CQ RRS+ E +LKKSDRR P SLDLNN  TN T++SPR GV+KK   +TR TGT PSPG PN+  TS   QKGWSSERV L T+ N + VN  LLP+NN RTLPSKWEDAERWIFSPVSGD   RPS  QP RRPK+KSGPLGPP  AYYS++SP + MF+GG   N M  SPF+  V+ AD LS++   G  G   +   +EPC+ RSVS+HGCS  +  S L    + K D  +D   NIS DVS+RDMATQMSPE SPHSS ++R SF+ STS VL I++ ++    K  VRDVQVDERVTM++W K  +   +G+G  + D+WKKK LE +S++WEVS+ A + S  KREEA++ AWENLQ AKAEAAIRKLEMKLEKKRSSSM++IMKK ++A+KKA++MRSS + + + Q ++TS+K+ISFRR   ISSL  CFTCHA
Sbjct:    1 MAELGLEDRNQQISRFR--ARDFSPDSVIFTAESNFSLFSSASASVDRCSFASDAHDRDSLVSEISQHLAGRDLRETLG-GPDLDPNKSTGHINSCHRRKVEKAKVQKAENDSEIENKDETLDSARNSFSQALKECQERRSRSENILKKSDRRRPASLDLNNHTTNATNASPRFGVMKKGSGLTRQTGTFPSPGTPNYRHTSIGAQKGWSSERVPLHTNGNLKQVNPALLPFNNGRTLPSKWEDAERWIFSPVSGDGPVRPSLQQPQRRPKSKSGPLGPPGVAYYSLFSPVLPMFEGGNFGNLMAGSPFSAAVLGADGLSIRSGAGS-GAGIYPACLEPCMARSVSIHGCSELVSHSSLPGPQEWKIDENKDAATNISRDVSRRDMATQMSPEGSPHSSPRQRPSFSPSTSSVLSIMQSENVQSSKLEVRDVQVDERVTMTRWSKKHRVRFSGKGLENTDEWKKKDLEAESSSWEVSEAAKSISKLKREEAKVTAWENLQMAKAEAAIRKLEMKLEKKRSSSMDRIMKKLRSAQKKAQEMRSSVLTNQSHQVASTSNKVISFRRNSHISSLRSCFTCHA 575


Match Name	Stats	Description
A0A5B6Z6L8	E-Value: 0.000e+0, PID: 61.06	Remorin_C domain-containing protein {ECO:0000259\|P... [more]
A0A5B6Z911	E-Value: 0.000e+0, PID: 61.49	Remorin_C domain-containing protein {ECO:0000259\|P... [more]
A0A5J5AE72	E-Value: 0.000e+0, PID: 60.34	Remorin_C domain-containing protein {ECO:0000259\|P... [more]
A0A5B6Z7B8	E-Value: 0.000e+0, PID: 60.17	Remorin_C domain-containing protein {ECO:0000259\|P... [more]
A0A7J0EK60	E-Value: 0.000e+0, PID: 57.19	(Remorin family protein {ECO:0000313\|EMBL:GFY86855... [more]
A0A2R6QXY5	E-Value: 0.000e+0, PID: 57.54	(Remorin, C-terminal protein isoform 1 {ECO:000031... [more]
A0A2R6QY35	E-Value: 0.000e+0, PID: 57.34	(Remorin, C-terminal protein isoform 2 {ECO:000031... [more]
E0CPU6	E-Value: 0.000e+0, PID: 58.97	Remorin_C domain-containing protein {ECO:0000259\|P... [more]
A0A5B6Z7R9	E-Value: 0.000e+0, PID: 58.79	Remorin_C domain-containing protein {ECO:0000259\|P... [more]
A0A2R6R3G5	E-Value: 0.000e+0, PID: 56.30	(Remorin, C-terminal protein {ECO:0000313\|EMBL:PSS... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.