MTSSPNASSWLPWIWALETLAYNHADSSLLIDLMKLIPDNVVDNGGNVAK
ESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHEL
SESEMLRLDVDTGLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCSDGV
TKRLPEGSNCDAAENPKVRDLSSGKRGINDLTTANEGMVSACRELIVYNA
YPDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDG
SNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDIL
LETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLG
FAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFKNRLRNSD
ISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCD
LSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCK
AYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVP
DSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQH
IPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQ
IFEKHRTAIDLKDKWRNMCKASPVV
Relationships |
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The polypeptide, XM_017382686.1, derives from mRNA, XM_017382686.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A7J7H3N9 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})
HSP 1 Score: 256.914 bits (655), Expect = 1.168e-72
Identity = 241/794 (30.35%), Postives = 352/794 (44.33%), Query Frame = 0
Query: 7 ASSWLPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDS------LKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDTGL-------PKCTLRKLKDMILKDSHLLPSYLKERSGLL------------------------KCSDGVTKR------LPEGSNCDAA--ENPKVRDLSSGKRGINDLTTANEGMVSACRELIVYNAY-PDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNL-------------------------------DSEPWAKSFHG---DMPSENVDDNHR--REILSSDDIDHDENDDSI--------AREDIL---LETQNSDS---QDSLANVNGTKEQL----------------------CMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISG---RGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETI--GSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 +SS LPW+W +E LA + D+S+LIDL+K P + D+ G A+E LRILE F + G G S ++ DS+ ++ + E S N ++ EML+ DV + PK TL++LKD IL+ +H + + LKE+SGL K SD T P N D E+ RDL KR +DL T N+ S + + N P + A K K D CT + + G S N ED+S + R+GS L D+ P S G +P D+ + E+ +S+ DE SI A++D++ ++ +SDS QD +V K CM C G QLLVCSS +C VVH+RCL AP+FD +FYCPFCAY A+S+Y + KK+ +L + L +F +N R + + R ++N +R + + + N N V+ VN Q + K +S GN++ ++ T+ G+ Q E+ D +C+ + +K LA K Q+VLQQP + QK A P++D ND +T ++ S ++++E+ YP++PQ RRKK+PW+ AEE LKEGV RF+S +RT+PWKRILEFG +F+K RT+IDLKDKWRN+CK SP Sbjct: 4 SSSTLPWLWVIEALASFKEVDASILIDLVKRTP-AISDDLGKSAREMVSLRILESFFAQQTGSTKGVSSAPDSKIEFDSSYRCEDVVRQILHEISASNLKMDGPEMLKWDVQNFIKHKRACFPKSTLQQLKDAILEGNHRILASLKEKSGLSIGNQSENRITVDDDDLNAVPGRLEKSSDSATMEAGGNLTAPTAENLDGLLREDSPNRDLLPSKRDRSDLDTENQSAKSNEDLINMDNGCDPRLHNAKKLKRDAACTSEAV-GQKSVPIIGNELSEDSSRRDGENTVREGSELAILSQVGGSEENRFSENNHDQRTNPQISCNNDTVPLGTSGDGPDCGLPVNGAKDDGKDCAEMGTSNAAPPDETHQSICVDEARDNAKDDMVHNPIQEMSSDSDGYQDEKVDVAMEKRTFLNSQCTFSVDSLATADCTELTLCMKCNEGGQLLVCSSSTCPLVVHQRCLSSAPSFDDSGKFYCPFCAYSHAISKYFEVKKKASLARKDLAAFIGLENGHRANKLCKRFLRPEQNQLRRDDNVNGNNQTNYNGNHVNEVNSSQYRENVEAKQQAEPSVSG--------FNGNLSCREGGVTVNDGTLAETQQIDERSGSKLHEDNPSCRDA-EIVDVTKILAGDGKQQEVLQQP------ITDSTQKAAC-------PPNADAEESSEEEND-KTSSN--------------------YSRSLRRKEKKYTYPAIPQLRRKKLPWTAAEEVILKEGVNRFSSVQDRTIPWKRILEFGVDVFQKGRTSIDLKDKWRNICKGSP 752
Match: A0A5B7AGL5 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})
HSP 1 Score: 224.557 bits (571), Expect = 1.475e-60
Identity = 157/446 (35.20%), Postives = 223/446 (50.00%), Query Frame = 0
Query: 249 DGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISGR--GDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSV----SC-DLSSRVGERDVTC-GGNMA----DKQNAETIGSSVYCQSTKE--------QVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKA 671 +G+ D W K D ++++ N E+ S+ D +DE D ++ L +Q + SQDSLA + T+ LCM C QLLVCS+ SC VVHE CLG A FD FYCPFCAY RA+ +Y + KK+ +L + L +F N + +S R RNH+R D E EN V++VN Q + +K SC +++ GE+ +T G + D Q E +G CQS + QV D +C+ +H + A V Q VLQQP + K A + P+ D ND T ++ S+ +K+E+ YP++PQ RRKKVPW+ EEE LKEGVRRF+S ++R++PWK+ILEFG+ +F+K RT IDLKDKWRN+C++ Sbjct: 413 NGAPPDGSHWEK--FADKAKDDMEHNGELEMSSNSDEYNDEKIDVAMKKHSFLSSQCAQSQDSLATADLTELNLCMKCNKSGQLLVCSTSSCPLVVHENCLGSAAIFDDGGNFYCPFCAYSRAILKYLEVKKKASLARKELAAFIGLGNEHQPKKLSKRLRSGRNHLRQDGGVDGNNEAKEFENHVNKVNNPQWRTNIEDKRQAEPLASCVNVNLPCGEQGITVINGPLCALPEDNQEGEKMGQDQECQSARVLEGQDIEIQVDHRNGGDNSSCRDTEIVHARERH-AEVGVQQDVLQQP------ITDSPHKAACQ-------PNIDAEESSEEDNDNSTASNY--------------------SIRFRKREKQYTYPAIPQLRRKKVPWTQVEEEILKEGVRRFSSIHDRSIPWKKILEFGSNVFQKGRTTIDLKDKWRNICRS 822
HSP 2 Score: 113.62 bits (283), Expect = 2.046e-23
Identity = 109/326 (33.44%), Postives = 152/326 (46.63%), Query Frame = 0
Query: 1 MTSSPNASSWLPWIWALETLAYN-HADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGSLK---LLRKEC---SGRNHELSESEMLRLDVD-------TGLPKCTLRKLKDMILKDSHLLPSYLKERSGL---------LKCSDG----VTKRLPEGSNCDA---------------------AENPKVRDLSSGKRGINDLTTANEGMVSAC---RELIVYNAYPDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNLDSEPWAKSFHGDMPSENVDDNH 275 M + P+++S LPWIW +ETLA + D+S LIDL++ P+ +VD+ G A+E LRILE R G S +S G S + +LR+ C S N ++ +EML DV+ LPKC L++LKD ILK S+ + + LKERSGL + DG + RL +GS D E+ + L KR +DL T N +V+ R + Y P + AA K K D CT Q I G +S H N +ED+SG I +GR+G +L + SE D H Sbjct: 1 MAAKPSSASTLPWIWVIETLASSAQVDASCLIDLIERTPE-IVDDLGRNAREMVSLRILESLFVERNRLTSGVSSTPNSKIGFDQSERCEDVLRRICCEISASNLKIDGTEMLNWDVEPFIMHKRACLPKCVLQQLKDEILKGSNPILASLKERSGLAIRDQYEDRILVDDGDLNAIAGRL-QGSGTDGQIVAAQGNIISSTTENQDGILQEDSPDKKLLPSKRDRSDLATEN--LVTQFHKDRICMDYGHDPHLHAAKKIKQDVTCTSQAI-GQNSVPLHGNELLEDSSGRIGQLNGREGCDLATGSQVGGLEESRFSEGDHDKH 321
Match: A0A6A4LKV1 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090} (Fragment))
HSP 1 Score: 222.246 bits (565), Expect = 9.076e-60
Identity = 164/450 (36.44%), Postives = 227/450 (50.44%), Query Frame = 0
Query: 254 DSEPWAKSFH-GDMPSENVDD---NHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISGR---GDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREK-------SSVSCDLS------SRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPEL-------DVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 +S P + H D+P + D+ N RRE+ S D DE D ++ L +Q S SQDSLA + T+ LCM C G QLLVCS +C VVH+ CLG AP+FD +FYCPFCAY A+SEY + KK+ AL +N L F +N R + R ++N E ++ T+ N EN V++VN Q + +K S V+ DL +RV D T G ++ +GS S E+ Q++ E D C+ S H +K E ++VLQQP IA + +++P D ND T R ++ KQE+ YP++PQ RRKKV W+ AEEE LK+G+R+F+S ++R +PWKRILEFG+ +F+K RT IDLKDKWRN+CK SP Sbjct: 394 NSVPLSDGTHLKDIPDDAKDEREHNPRREMSSDSDGYQDEKIDVALKKRNFLSSQCSISQDSLATADCTELNLCMKCNKGGQLLVCSGSACPLVVHQSCLGSAPSFDNSGKFYCPFCAYSHAISEYLEIKKKAALARNELAVFIGLENGHRGDKHTKRFLVPEQNQFILDENANGNTQANCNENHVNKVNSTQHRGDIXDKKQMEPSVSKVNDDLPCQEEGVTRVD--DATLGALPDGERGGGKLGSQCQSGSALEE-QQIEEGGGCDRGDDNSTCRDRESGH-ETKGHGEDEMQKEVLQQP-------------IANPNRRAARLPKVDVGESSEEENDKATSNYR------------------IKRRNRGKQEKQYTYPAIPQLRRKKVSWTSAEEEILKDGMRKFSSIHDRNIPWKRILEFGSDVFQKGRTTIDLKDKWRNICKGSP 808
HSP 2 Score: 90.8929 bits (224), Expect = 3.010e-16
Identity = 63/160 (39.38%), Postives = 90/160 (56.25%), Query Frame = 0
Query: 9 SWLPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF----PGSRKGECCGDS-LKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCSDGVTKRLP 155 S LPWIW +E LA + D+S+L+DL+K P+ + D+ G A+E LRILE F GS+ G+ DS ++LD + L+ + E S N + E EML+ DV T LPKCTL +LK+ IL+ +H + + L E SG L S+ R+P Sbjct: 6 STLPWIWVIEALASFKQVDASILLDLVKRTPE-ISDDLGENAREMVSLRILESFFARQSGSKNGDSAIDSKIELDPSKQCEDVLRDIVHETSASNLRMDEPEMLKWDVQTFIMHKRASLPKCTLLQLKNAILEGNHPILASLTESSG-LSLSNQSGNRIP 163
Match: A0A834LRH5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7144792.1}))
HSP 1 Score: 215.698 bits (548), Expect = 1.929e-57
Identity = 171/485 (35.26%), Postives = 245/485 (50.52%), Query Frame = 0
Query: 215 FCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF---KNRLRNSDISGR---GDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREK-------SSVSCDLS------SRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPEL-------DVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 + TQQ G++S N + +TS + L DG++L P D + + N RRE+ S D DE D ++ L +Q S SQDSLA + T+ LCM C G QLLVCS +C VVH+ C+G AP+FD +FYCPFCAY A+SEY + KK+ A+ +N L F +N R + R ++N E + T+ N EN V++VN Q + +K S V+ DL +RV D T G ++ +GS S E+ Q++ E D C+ S H +K E ++VLQQP IA + +++P + D ++ E D + + + R RS G KQ++ YP++PQ RRKKV W+ AEEE LK+G+R+F+S ++R +PWKRILEFG+ +F+K RT IDLKDKWRN+CK SP Sbjct: 370 YETQQRNHGDESRDKCGNTQI-NTSNSVPLL---DGTHLKDIP-------DDARDEREHNPRREMSSDSDGYQDEKIDVALKKRNFLSSQCSISQDSLATADCTELNLCMKCNKGGQLLVCSGSACPLVVHQSCVGSAPSFDNSGKFYCPFCAYSHAISEYLEIKKKAAVARNELAVFIGLENGHRVDKHTKRFLVPEQNQFILDENENGNTQANCNENHVNKVNNTQHRGDIDDKKQMEPSVSKVNDDLPCQEEGVTRVD--DGTLGALPDGERGGGKLGSQCQSGSALEE-QQIEEGGGCDRGDDNSTCRDRESGHE-TKGHGEDEMRKEVLQQP-------------IANPNRRAARLP----------KVDVGESSEEENDKATSNYRIKR------RSRG--KQKKQYTYPAIPQLRRKKVSWTSAEEEILKDGMRKFSSIHDRNIPWKRILEFGSDVFQKGRTTIDLKDKWRNICKGSP 808
HSP 2 Score: 88.1965 bits (217), Expect = 2.131e-15
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 0
Query: 9 SWLPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF----PGSRKGECCGDS-LKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCSDGVTKRLP 155 S LPWIW +E LA + D S+L+DL+K P+ + D+ G A+E LRILE F GS+ G DS ++LD + L+ + E S N + E EML+ DV T LPKCTL +LK+ IL+ +H + + L E SG L S+ R+P Sbjct: 6 STLPWIWVIEALASFKQVDVSILLDLVKRTPE-ISDDLGENAREMVSLRILESFFARQSGSKNGGSAIDSKIELDPSKQCENVLRDIVHETSASNLRMDEPEMLKWDVKTFIMHKRASLPKCTLLQLKNAILEGNHPVLASLTESSG-LSLSNQSGNRIP 163
Match: A0A5J4ZJJ1 (Myb-like domain-containing protein {ECO:0000259|PROSITE:PS50090})
HSP 1 Score: 212.231 bits (539), Expect = 3.441e-56
Identity = 148/439 (33.71%), Postives = 230/439 (52.39%), Query Frame = 0
Query: 249 DGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF-----KNRLRNSDISGRGDRNHVR-DSEVSDKCTEQNNLENVVSRVNQVQSMMRMREK-----SSVSCDLSSRVGERDVT-CGGNM----ADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKA 671 +G D W K+F D +++++N E+ S D +DE D ++ L +Q S SQDSLA + T+ LCM C QLLVCS+ +C VVHE CLG A +FD FYCPFCAY +A+S+Y + KK+ +L + L +F +++L+ R +RN +R D D+ E N N V++VN Q + +K S++ + + GE+ V G + D + E +G CQS + V ++VQ + + + +V ++ + GV +Q ++ + + DS SH+ + D E+ + + S+ +K E+ YP++PQ RRKKVPW+ EE+ LKEGVRRF+S+N+R++PWK+ILEFG +F+K RT IDLKDKWRN+C++ Sbjct: 411 NGEPPDGSHW-KNF-ADKAKDDMENNRELEMSSDSDEYNDEKIDVSMKKHSFLSSQYSFSQDSLATSDWTELNLCMKCNKSGQLLVCSTSACPLVVHENCLGSAASFDDGGNFYCPFCAYSQAISKYLEVKKKASLARKELAAFIGLGNEHQLKKLPKRLRSERNQLRQDGGDVDRNNETNYNGNYVNKVNNPQCRTNIEDKQQAEPSALRVNDNLPCGEQGVAMINGPLRALPEDNREVEKMGQE--CQSAR--VLGGHHIEVQADHRHGGDNSSCRDAGIVHACERHAEV--GV-------QQNVSGQPIIDS-----------SHKAACQPNVDTEESSEEDNNSIASNY-----SIRFRKPEKRYTYPAIPQLRRKKVPWTQVEEDILKEGVRRFSSENDRSIPWKKILEFGGNVFQKGRTTIDLKDKWRNICRS 818
HSP 2 Score: 102.449 bits (254), Expect = 7.593e-20
Identity = 101/302 (33.44%), Postives = 134/302 (44.37%), Query Frame = 0
Query: 1 MTSSPNASSWLPWIWALETLAYN-HADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGS------LKLLRKECSGRNHELSESEMLRLDVD-------TGLPKCTLRKLKDMILKDSHLLPSYLKERSGLLKCS-------------DGVTKRLPEGSNCDAA---------------------ENPKVRDLSSGKRGINDLTTAN-EGMVSACRELIVYNAYPDVKAATKRKWDTFCTQQVIEGNDSASFHENRHVEDTSGGIVLYSGRDGSNL 253 M + P ++S L WIW +ETLA + D+SLL+DL+K P+ + D+ G+ A E LRILE R G S +S G S + + E S N ++ +EML D+ LPKC L++LKD ILK SH + + LKERSGL + + V RL +GS D E VRDL KR +DL T N R I P + A K K D CT Q I G +S +E +ED SG I +GR G +L Sbjct: 1 MAAKPYSASTLRWIWVIETLASSTQVDASLLMDLIKRTPE-IFDDLGSNATEMVSLRILESLFAERNRMTIGVSPAPNSKIGFDPSERCEDVFRHIWCEISASNSKIDGTEMLNWDIQPFILHKRACLPKCVLQQLKDAILKGSHPILASLKERSGLAIRNQSEARILVDDVDLNAVAGRL-QGSGTDGPIVAAQGNIISSTSENRDELLQEYSPVRDLLPSKRDRSDLATENLATQFHEDRISIDSGLDPHLHAVKKIKQDVTCTHQAI-GQNSVPLNE--PLEDPSGRIGQLNGRKGCDL 297
Match: A0A7C9AI95 ((Uncharacterized protein {ECO:0000313|EMBL:MBA4667936.1}))
HSP 1 Score: 201.445 bits (511), Expect = 4.435e-53
Identity = 204/721 (28.29%), Postives = 319/721 (44.24%), Query Frame = 0
Query: 11 LPWIWALETLA-YNHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGFPGSRKGECCGDSLKLDSNAGGFGS------LKLLRKECSGRNHELSESEMLRLDV-------DTGLPKCTLRKLKDMILKDSHLLPSYLKERSGLL-----KCSDGV---TKRLPEGSNCDAAEN-PKVRDLSSGKRGIND------LTTAN--EGMVSACRELI---------VYNAYPDVKAATKRKWDTFCTQQ----VIEGND---SASFHENRHVEDTSGGIVLYSGRDGSNLDSEPWAKSFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNAL-LSFKNRLR-----NSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVT-CGGNMA--DKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASPVV 675 LPW W +ETLA ++LL +L+ P + G A+E+ LR LE F GS G S AG S L+ + E SG + + S+ L+ DV LP+CTL LK MI++ +H PS LKE CS+GV + L NCD + P + S K G +D L N M + + + N P VK K D +Q+ +G D + + +NR D + S +G NL GD+ V +++++ ++ H + D IAR+ + + S D + ++ LCM C G LL+C + +C H+ CLG + TFD + +FYCPFCAY RA+SEY+ +K++ +L + L L ++ +S + GD N R +E +K TE N +NVV+ V + + + K L + E T N++ D+Q AE I Q ++ + + + N +S H + +K + ++ T ++ ++ + V + DSD ++ E+ +N + P PLR + P+ + RRKKVPW+ EE LKEGV++F +++ +PWK ILEFG +F+K R A+DLKDKWRN+ + SP V Sbjct: 10 LPWCWVIETLAGSQQVGAALLHELLSRAPP-LAGKSGKEAREAVALRCLEEFFGSPTGSIDDHPASRTSKAGFDASDSCEDVLQRIVHESSGSDLQKDASDELKCDVRAFIELKKATLPRCTLGLLKRMIIEGTH--PS-LKELGEFTCQNQSICSNGVDPASTVLTVNENCDDGQAMPAEENRDSAKNGTSDQLEQASLPNGNSPHSMAGTSNDQVQDGDDTAHSLDNQQPPVKKPKLDKQDGLQSQRQPSIPCDGGDMSNAVADAKNRQCLDATQNCNGTS--NGENL----------GDLRKTGVCYDNQQQTSHDNNGPHSKETD-IARKMLAFLSSQSILPDDSPVMTESEVNLCMKCNKGGDLLICDASTCPLAFHDGCLGCSATFDDQGKFYCPFCAYSRAISEYAKAKEKVSLARKELSLFIGGKISCCAEPDSTTASGGDANQQRRNEHINKKTEPRNDDNVVTEVVNRRQLRSSKNKQPEVPPLPANAAENAFTPAAQNLSPRDRQGAEVIA-----QLARDTTRLLNQGQDHNTDGGSSSHASDRITETRQKSSYLKRKKE----ATRHQAAELHVD-VNSESISDSDGL------------SEDEKKWTNTSILSP----TPLREV-----------PATNRSRRKKVPWTAEEEAILKEGVQKFIQGDSKAIPWKDILEFGGSVFQKGRRAVDLKDKWRNIMRGSPKV 676
Match: A0A6P6SHX1 ((uncharacterized protein LOC113691459 isoform X3 {ECO:0000313|RefSeq:XP_027065401.1}))
HSP 1 Score: 195.667 bits (496), Expect = 2.043e-50
Identity = 145/443 (32.73%), Postives = 213/443 (48.08%), Query Frame = 0
Query: 261 SFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFK------NRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPN--------GVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPH-VLPRELA-------------KPLRSLGVQ--KQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 SF G +++ N ++ S D DE D ++D LL +Q + SQDS A T+ + C+ C QLLVCSS +CQ VH CL A FD K +FYCPFCAY RA+SEY K++ + + L SF + + + GR RN +R +E NN E+ V++V+ D CG M +K +E P L +C + +S H G K ++ +++ L N L+ EQ + V S V K ++ RN+ GA+ ++ VS P LP+E K +RS ++ + ++ YP++PQ RRK +PW+ AEEE LKEGV+R +S ++R++PWK+ILEFG +F++ RT IDLKDKWRN+CK P Sbjct: 424 SFGGSGSKDDMQHNPDFDMTSDSDDYRDEKMDIALKKDALLSSQCTYSQDSFA----TQAKYCVKCNKEGQLLVCSSDTCQLAVHSSCLPSAAHFDGKGKFYCPFCAYSRAISEYMQVKRKASFARKDLASFIGVQTVCQQKKATMKLGRESRNELRKNE-------GNNSEDFVNKVS-------------------------DSHCGVKMGNKHQSE------------------PPL---SCSSDHS-HSGEKVVSPSDRMPNTLVSGNLERKYMEPQCQLLGVQVEQPVVAHPVHGSDV--DRKKAHMADRNEGNAGAEGKK-VSEIPESALPQEPVCGPISESSEEDNEKSVRSYSIRLRRPIKNYTYPAIPQLRRKILPWTKAEEEKLKEGVQRLSSPHDRSIPWKQILEFGGDVFQRGRTTIDLKDKWRNICKGGP 805
HSP 2 Score: 41.9726 bits (97), Expect = 4.024e-1
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0
Query: 104 EMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGL---LKCSDGV 150 EML DV + LPK L+KLKD IL+ SH + S LKERSGL +C+D + Sbjct: 12 EMLNGDVQSFIVHKRASLPKPALQKLKDAILEGSHSILSSLKERSGLTVTTQCNDDI 68
Match: A0A6P6SGY8 ((uncharacterized protein LOC113691459 isoform X2 {ECO:0000313|RefSeq:XP_027065399.1, ECO:0000313|RefSeq:XP_027065400.1}))
HSP 1 Score: 196.052 bits (497), Expect = 3.061e-50
Identity = 145/443 (32.73%), Postives = 213/443 (48.08%), Query Frame = 0
Query: 261 SFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFK------NRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPN--------GVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPH-VLPRELA-------------KPLRSLGVQ--KQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 SF G +++ N ++ S D DE D ++D LL +Q + SQDS A T+ + C+ C QLLVCSS +CQ VH CL A FD K +FYCPFCAY RA+SEY K++ + + L SF + + + GR RN +R +E NN E+ V++V+ D CG M +K +E P L +C + +S H G K ++ +++ L N L+ EQ + V S V K ++ RN+ GA+ ++ VS P LP+E K +RS ++ + ++ YP++PQ RRK +PW+ AEEE LKEGV+R +S ++R++PWK+ILEFG +F++ RT IDLKDKWRN+CK P Sbjct: 522 SFGGSGSKDDMQHNPDFDMTSDSDDYRDEKMDIALKKDALLSSQCTYSQDSFA----TQAKYCVKCNKEGQLLVCSSDTCQLAVHSSCLPSAAHFDGKGKFYCPFCAYSRAISEYMQVKRKASFARKDLASFIGVQTVCQQKKATMKLGRESRNELRKNE-------GNNSEDFVNKVS-------------------------DSHCGVKMGNKHQSE------------------PPL---SCSSDHS-HSGEKVVSPSDRMPNTLVSGNLERKYMEPQCQLLGVQVEQPVVAHPVHGSDV--DRKKAHMADRNEGNAGAEGKK-VSEIPESALPQEPVCGPISESSEEDNEKSVRSYSIRLRRPIKNYTYPAIPQLRRKILPWTKAEEEKLKEGVQRLSSPHDRSIPWKQILEFGGDVFQRGRTTIDLKDKWRNICKGGP 903
HSP 2 Score: 70.8626 bits (172), Expect = 5.687e-10
Identity = 58/167 (34.73%), Postives = 80/167 (47.90%), Query Frame = 0
Query: 1 MTSSPNASSWLPWIWALETLAYN-HADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF------PGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGL---LKCSDGV 150 M S S + W W +E L+ + AD+SLLID++K P+ D G +E LRILE + G L+LD + L+ + E S + EML DV + LPK L+KLKD IL+ SH + S LKERSGL +C+D + Sbjct: 1 MASEIPVPSTMAWSWVIEALSRSKQADTSLLIDIIKKAPEVSDDELGKNCREVVSLRILESLIVKGNQNKDKDAATVGQKLELDPSNNCEDVLRQI-SEMSAMDLTAVAPEMLNGDVQSFIVHKRASLPKPALQKLKDAILEGSHSILSSLKERSGLTVTTQCNDDI 166
Match: A0A6P6SIN0 ((uncharacterized protein LOC113691459 isoform X1 {ECO:0000313|RefSeq:XP_027065397.1}))
HSP 1 Score: 195.667 bits (496), Expect = 3.404e-50
Identity = 145/443 (32.73%), Postives = 213/443 (48.08%), Query Frame = 0
Query: 261 SFHGDMPSENVDDNHRREILSSDDIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSFK------NRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLENVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQNAETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLHGGSKQLAVVEKLQKVLQQPN--------GVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPH-VLPRELA-------------KPLRSLGVQ--KQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 SF G +++ N ++ S D DE D ++D LL +Q + SQDS A T+ + C+ C QLLVCSS +CQ VH CL A FD K +FYCPFCAY RA+SEY K++ + + L SF + + + GR RN +R +E NN E+ V++V+ D CG M +K +E P L +C + +S H G K ++ +++ L N L+ EQ + V S V K ++ RN+ GA+ ++ VS P LP+E K +RS ++ + ++ YP++PQ RRK +PW+ AEEE LKEGV+R +S ++R++PWK+ILEFG +F++ RT IDLKDKWRN+CK P Sbjct: 531 SFGGSGSKDDMQHNPDFDMTSDSDDYRDEKMDIALKKDALLSSQCTYSQDSFA----TQAKYCVKCNKEGQLLVCSSDTCQLAVHSSCLPSAAHFDGKGKFYCPFCAYSRAISEYMQVKRKASFARKDLASFIGVQTVCQQKKATMKLGRESRNELRKNE-------GNNSEDFVNKVS-------------------------DSHCGVKMGNKHQSE------------------PPL---SCSSDHS-HSGEKVVSPSDRMPNTLVSGNLERKYMEPQCQLLGVQVEQPVVAHPVHGSDV--DRKKAHMADRNEGNAGAEGKK-VSEIPESALPQEPVCGPISESSEEDNEKSVRSYSIRLRRPIKNYTYPAIPQLRRKILPWTKAEEEKLKEGVQRLSSPHDRSIPWKQILEFGGDVFQRGRTTIDLKDKWRNICKGGP 912
HSP 2 Score: 62.7734 bits (151), Expect = 1.614e-7
Identity = 58/176 (32.95%), Postives = 80/176 (45.45%), Query Frame = 0
Query: 1 MTSSPNASSWLPWIWALETLAYN-HADSSLLI---------DLMKLIPDNVVDNGGNVAKESAFLRILEGF------PGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVDT-------GLPKCTLRKLKDMILKDSHLLPSYLKERSGL---LKCSDGV 150 M S S + W W +E L+ + AD+SLLI D++K P+ D G +E LRILE + G L+LD + L+ + E S + EML DV + LPK L+KLKD IL+ SH + S LKERSGL +C+D + Sbjct: 1 MASEIPVPSTMAWSWVIEALSRSKQADTSLLIELCWHLCDSDIIKKAPEVSDDELGKNCREVVSLRILESLIVKGNQNKDKDAATVGQKLELDPSNNCEDVLRQI-SEMSAMDLTAVAPEMLNGDVQSFIVHKRASLPKPALQKLKDAILEGSHSILSSLKERSGLTVTTQCNDDI 175
Match: A0A6I9TUF4 ((uncharacterized protein LOC105168847 isoform X1 {ECO:0000313|RefSeq:XP_011087312.1}))
HSP 1 Score: 195.667 bits (496), Expect = 4.385e-50
Identity = 140/419 (33.41%), Postives = 212/419 (50.60%), Query Frame = 0
Query: 269 ENVDDNHRREILSSD-DIDHDENDDSIAREDILLETQNSDSQDSLANVNGTKEQLCMMCKLGDQLLVCSSGSCQRVVHERCLGFAPTFDAKRRFYCPFCAYFRAVSEYSDSKKQYALTKNALLSF------KNRLRNSDISGRGDRNHVRDSEVSDKCTEQNNLE--NVVSRVNQVQSMMRMREKSSVSCDLSSRVGERDVTCGGNMADKQN--AETIGSSVYCQSTKEQVQKVPELDVQNCKAYNSLH---GGSKQLAVVEKLQKVLQQPNGVILVTNNEEQKIALRAVKDSKVPDSDKYLKISHRNDPRTGADREQDVSNQPHVLPRELAKPLRSLGVQKQEQHIPYPSVPQYRRKKVPWSDAEEEALKEGVRRFASDNNRTMPWKRILEFGAQIFEKHRTAIDLKDKWRNMCKASP 673 +NVD+ +SSD D +DE + ++ L +Q + SQDSLA + + LCM C G +LLVCSS SC V+HE C G TFD K +FYCPFCAY +A+S+Y + KK+ +L + +F K + S S R ++H+ E D E N L +VV +V+ Q R+ + + + GG D N A T+ T Q + P++ +N +A ++ G S + + +Q + N K ++ ++ +P +K SH D + E + S+ R V+KQE+ YP++PQ RRK++PW+ AEEE LK+G+R + S ++ +PWK+ILEFGA +FE+ RT +DLKDKWRNMCK +P Sbjct: 545 QNVDEAVEDVNISSDSDGYYDERSNIDTKKRRFLSSQCTYSQDSLATTDWRELNLCMKCNKGGKLLVCSSNSCPLVIHESCFGSDATFDTKGKFYCPFCAYSQAISKYMEVKKKVSLARKDFATFICLGSPKEKKEPSQRSCRLKQDHL---EQDDDFPESNELNKGDVVEKVSNCQHRKRLEFEQAGPSEHPGNSPH----FGGKAVDSTNRLARTLSKDKQGGETTRQESQSPKVHGRNQRAARAIRKSRGESTSFQASRRPEVNEKQKHA------NTRSKKEVQCPPETDLPYENKSSPSSHSTDSEEIPEEENEDSSVSKYFIR----------VRKQEKQCSYPAIPQLRRKRLPWTSAEEETLKKGMRLYCSPYDKIIPWKKILEFGANVFEQSRTTMDLKDKWRNMCKGTP 940
HSP 2 Score: 69.3218 bits (168), Expect = 1.768e-9
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 0
Query: 8 SSWLPWIWALETLAY-NHADSSLLIDLMKLIPDNVVDNGGNVAKESAFLRILEGF-----PGSRKGECCGDSLKLDSNAGGFGSLKLLRKECSGRNHELSESEMLRLDVD-------TGLPKCTLRKLKDMILKDSHLLPSYLKERSGL 143 +S LP IW +ETLA+ N D+SLL+DL++ P+ + D GN A+ES LRILE F P + ++L+ + L+L+ E + + + E+++ D+ + L K L++LKD IL S+ + LK +SGL Sbjct: 22 TSPLPRIWVIETLAHSNRVDTSLLLDLLEKTPE-ISDEFGNNARESVSLRILESFIVQGGPANPVSSASSKKIRLNPSDRCEDVLRLILTEMPPPHPKRAGPEIMKWDLQPFIEHKRSTLAKSALQQLKDAILTGSYCFLASLKGQSGL 169
Match Name | Stats | Description |
---|---|---|
A0A7J7H3N9 | E-Value: 1.168e-72, PID: 30.35 | Myb-like domain-containing protein {ECO:0000259|PR... [more] |
A0A5B7AGL5 | E-Value: 1.475e-60, PID: 35.20 | Myb-like domain-containing protein {ECO:0000259|PR... [more] |
A0A6A4LKV1 | E-Value: 9.076e-60, PID: 36.44 | Myb-like domain-containing protein {ECO:0000259|PR... [more] |
A0A834LRH5 | E-Value: 1.929e-57, PID: 35.26 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7144... [more] |
A0A5J4ZJJ1 | E-Value: 3.441e-56, PID: 33.71 | Myb-like domain-containing protein {ECO:0000259|PR... [more] |
A0A7C9AI95 | E-Value: 4.435e-53, PID: 28.29 | (Uncharacterized protein {ECO:0000313|EMBL:MBA4667... [more] |
A0A6P6SHX1 | E-Value: 2.043e-50, PID: 32.73 | (uncharacterized protein LOC113691459 isoform X3 {... [more] |
A0A6P6SGY8 | E-Value: 3.061e-50, PID: 32.73 | (uncharacterized protein LOC113691459 isoform X2 {... [more] |
A0A6P6SIN0 | E-Value: 3.404e-50, PID: 32.73 | (uncharacterized protein LOC113691459 isoform X1 {... [more] |
A0A6I9TUF4 | E-Value: 4.385e-50, PID: 33.41 | (uncharacterized protein LOC105168847 isoform X1 {... [more] |
Name | Description |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |