MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRL
EKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVS
SEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGE
VCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSA
LDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLK
KSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALG
LANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNF
MKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYN
NFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT
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The polypeptide, XM_017386783.1, derives from mRNA, XM_017386783.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: Q2VEY0 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 903.279 bits (2333), Expect = 0.000e+0
Identity = 437/438 (99.77%), Postives = 437/438 (99.77%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT 438 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVV ADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT Sbjct: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVSADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT 438
Match: A0A2I4EBV2 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 348/437 (79.63%), Postives = 384/437 (87.87%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLK 437 MSVA+ WIVTPS+EVSN G+ + R+G R+LDPS SR R +KG+ KW+S S + + +S +GGS L++GS FPV SSMV G++AVSSE+KVYDVVLKQAALVK+Q RS +L+VKP+++LPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITP+ALDRWE RLEDLF+GRPFDMLDAALSDTV KFPVDIQPFKDMIEGMRMDL+KSRYKNFDELYLYCYYVAGTVGLMSVP+MGIAP+SQATTE VYNAALALG+ANQLTNILRDVGEDARRGRVYLPQDEL QAGLSDEDIFAGKVTDKWRNFMK QIKRARMFFDEA+ GV ELS ASRWPVWASLLLYRQILDEIEANDYNNFT+RAYVSK KK+LALP+AY K+ P +RTSS K Sbjct: 1 MSVALLWIVTPSIEVSNSVGFFNSVRDGNRLLDPSISISR---YWGSIRAKKGRKEKWNSCSVSTDLKFSGVGGSGLDSGSNFPVLSSMVANPAGELAVSSEQKVYDVVLKQAALVKKQLRSSGDLDVKPDIVLPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEDLFRGRPFDMLDAALSDTVTKFPVDIQPFKDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTEGVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELTQAGLSDEDIFAGKVTDKWRNFMKNQIKRARMFFDEAEKGVTELSAASRWPVWASLLLYRQILDEIEANDYNNFTQRAYVSKAKKLLALPIAYTKSLVPPSRTSSLLTK 434
Match: A0A5B6Z4A7 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 347/439 (79.04%), Postives = 383/439 (87.24%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDE-ELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT 438 MSVA+ W+V+P+ EVSNCFG+ E+ REG VLD SR +RD+N+ C RL+ G+ ++W+ S A+ YSCLGGSELENG FPV SSMV A+ SSE+KVYDVVLKQAALVK+Q S +++VKP+++LPGTLS EAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITP+AL+RWE RLEDLF+GRPFDMLDAALSDTV KFPVDIQPFKDMIEGMRMDL KSRYKNFDELYLYCYYVAGTVGLMSVP+MGIAP SQAT ES+YNAALALG+ANQLTNILRDVGEDARRGR+YLPQDELAQAGLSD+DIFAGKVTDKWR FMK QIKRARMFFDEA+ GV ELS ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALP+AY K+ +RTSS KT Sbjct: 1 MSVALPWVVSPNPEVSNCFGFFESVREGNMVLDSSRSTARDRNLMCIARLKNGRKQRWNCSSLYADLRYSCLGGSELENGDKFPVLSSMV--ANPAAVSSSEQKVYDVVLKQAALVKKQLGSSTGDVDVKPDILLPGTLS---EAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALERWESRLEDLFQGRPFDMLDAALSDTVAKFPVDIQPFKDMIEGMRMDLIKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESQATAESIYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDDDIFAGKVTDKWRKFMKNQIKRARMFFDEAEKGVTELSSASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPIAYTKSLVRPSRTSSHLAKT 434
Match: Q078Y5 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 713.375 bits (1840), Expect = 0.000e+0
Identity = 339/438 (77.40%), Postives = 381/438 (86.99%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT 438 MSVA+ W+V+P+ EVSN G+L++ REG RV SR +RD+N+ GR++KG+ ++W+ S NA+ Y+C GGS ENGS F V SS+V G+M VSSEKKVYDVVLKQAALVKRQ RS +ELEVKP++++PG L LLSEAYDRCGEVCAEYAKTFYLGT LMTPERRRAIWAIYVWCRRTDELVDGPNASHITP ALDRWE RLED+F G+PFDMLDAALSDTV +FPVDIQPF+DMIEGMRMDL KSRY NFDELYLYCYYVAGTVGLMSVP+MGIAP S+ATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAG+VTDKWRNFMKKQI+RAR FFDE++ GV EL ASRWPV A+LLLYR+ILDEIEANDYNNFT+RAYVSKPKK+L LP+AYAK+ P RTS+ KT Sbjct: 3 MSVALFWVVSPNSEVSNGTGFLDSLREGNRVFVSSRFLARDRNLMWNGRIKKGRRQRWNFGSLNADSRYACFGGSRTENGSSFSVQSSLVASPSGEMTVSSEKKVYDVVLKQAALVKRQLRSTDELEVKPDIVVPGNLGLLSEAYDRCGEVCAEYAKTFYLGTKLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPQALDRWEARLEDIFSGQPFDMLDAALSDTVSRFPVDIQPFRDMIEGMRMDLWKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRNFMKKQIQRARKFFDESEKGVTELDSASRWPVLAALLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYAKSLVPPNRTSTPLAKT 440
Match: A0A5N6QYV0 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 344/437 (78.72%), Postives = 381/437 (87.19%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLK 437 MSVA WIVTPS+E+SN FG+ ++ R+G R+LD S SRD R +K + +KW+ S + YS +GGS LE GS FPV SSMV G+MA+SSE+KVY+VVLKQAALVK+Q RS +L+V P+++LPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITP+ALDRWE RLEDLF+GRPFDMLDAALSDTV KFPVDIQPFKDM+EGMRMDLKKSRYK+FDELYLYCYYVAGTVGLMSVP+MGIAP SQATTESVYNAALALG+ANQLTNILRDVGEDA RGR+YLPQDELAQAGLSD+DIFAGKVTDKWRNFMK QIKRARMFFDEA+ GV ELS ASRWPVWASLLLYRQILDEIEANDYNNFT+RAYVSK KK+LALP+AYA + P +RTSS K Sbjct: 1 MSVAFLWIVTPSVEISNSFGFFDSVRDGNRLLDSSMPVSRDWG---SIRAKKSRKQKWNPCSLGTDLKYSSVGGSGLEGGSNFPVLSSMVANPAGEMAISSEQKVYNVVLKQAALVKKQLRSSGDLDVNPDIVLPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWEARLEDLFQGRPFDMLDAALSDTVTKFPVDIQPFKDMVEGMRMDLKKSRYKSFDELYLYCYYVAGTVGLMSVPVMGIAPESQATTESVYNAALALGIANQLTNILRDVGEDAGRGRIYLPQDELAQAGLSDDDIFAGKVTDKWRNFMKNQIKRARMFFDEAEKGVTELSAASRWPVWASLLLYRQILDEIEANDYNNFTRRAYVSKAKKLLALPIAYASSLIPPSRTSSLLTK 434
Match: A0A6I9U7U4 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0
Identity = 345/438 (78.77%), Postives = 388/438 (88.58%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFA-PTARTSSTFLK 437 MSVA+ W+V+P+ EVSN G+LE+ REG R+LD R +R KN+ C GRL+KG+ + S KS NA+ S+ LGGS +NGS SSMV G++ +SSE+KVYDVVLKQAALVKR+ +S +++EVKP++ILPG+LSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITP+ALDRWE RLED+F+GRPFDMLDAALSDTV +FPVDIQPF+DMIEGMRMDL KSRYKNFDELYLYCYYVAGTVGLMSVP+MGIAP+SQATTESVYNA LALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQI RAR FFD+A+ GV++LS ASRWPVWASLLLYRQILDEIEANDYNNFT+RAYV KPKKILALP+AYAK+ P +RTSS +K Sbjct: 1 MSVALLWVVSPTYEVSNGTGFLESVREGNRILDSFRSVARCKNLICNGRLDKGQKNRRSYKSKNADLSFWSLGGSRSQNGSRITPISSMVASPAGEITLSSEQKVYDVVLKQAALVKRKLKSSDDIEVKPDIILPGSLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWEARLEDIFRGRPFDMLDAALSDTVCRFPVDIQPFRDMIEGMRMDLWKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAGLALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQINRARKFFDDAENGVKDLSSASRWPVWASLLLYRQILDEIEANDYNNFTRRAYVGKPKKILALPLAYAKSLVPPPSRTSSPVVK 438
Match: A0A5B6Z5C1 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 345/438 (78.77%), Postives = 382/438 (87.21%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDE-ELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLK 437 MSVA+ W+V+P+ EVSNCFG+ E+ REG VLD SR +RD+N+ C RL+ G+ ++W+ S A+ YSCLGGSELENG FPV SSMV A+ SSE+KVYDVVLKQAALVK+Q S +++VKP+++LPGTLS EAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITP+AL+RWE RLEDLF+GRPFDMLDAALSDTV KFPVDIQPFKDMIEGMRMDL KSRYKNFDELYLYCYYVAGTVGLMSVP+MGIAP SQAT ES+YNAALALG+ANQLTNILRDVGEDARRGR+YLPQDELAQAGLSD+DIFAGKVTDKWR FMK QIKRARMFFDEA+ GV ELS ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALP++Y K+ +RTSS K Sbjct: 1 MSVALPWVVSPNPEVSNCFGFFESVREGNMVLDSSRSTARDRNLMCIARLKNGRKQRWNCSSLYADLRYSCLGGSELENGDKFPVLSSMV--ANPAAVSSSEQKVYDVVLKQAALVKKQLGSSTGDVDVKPDILLPGTLS---EAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALERWESRLEDLFQGRPFDMLDAALSDTVAKFPVDIQPFKDMIEGMRMDLIKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESQATAESIYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDDDIFAGKVTDKWRKFMKNQIKRARMFFDEAEKGVTELSSASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPISYTKSLVRPSRTSSPVAK 433
Match: A0A1J0A0R6 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0
Identity = 339/433 (78.29%), Postives = 379/433 (87.53%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSS 433 MSVA W+V+P+ EVSNCFG+LE+AREG R+ D SR SRD+++ C + ++G + W S NA+ SYS G P+ SS+V G+MA SSE+KVYDVVLKQAALVK+Q ++ E+ +VKP+++LPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITP ALDRWE RLED+F+GRPFDMLDAALSDTV +FPVDIQPFKDMIEGMRMDL+KSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAP +QATTESVYNAALALG+ANQLTNILRD GEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWR+FMK QIKRAR+FFDEA+ GV EL+ ASRWPVWASLLLYRQILDEIEANDYNNFT+RAYVSKPKK+LALPVAYAK+ +RTSS Sbjct: 1 MSVAFIWVVSPNSEVSNCFGFLESAREGNRLFDSSRYISRDRSLICHSKFKRGNKKNWKYSSSNADLSYSYSGKKGKS-----PIVSSLVANPAGEMATSSEQKVYDVVLKQAALVKKQLKNAEDYDVKPDIVLPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPKALDRWESRLEDIFRGRPFDMLDAALSDTVTRFPVDIQPFKDMIEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPETQATTESVYNAALALGIANQLTNILRDDGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRSFMKNQIKRARLFFDEAEKGVTELNSASRWPVWASLLLYRQILDEIEANDYNNFTRRAYVSKPKKVLALPVAYAKSLVSPSRTSS 428
Match: A0A1S3X651 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 341/438 (77.85%), Postives = 378/438 (86.30%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT 438 MSVA+ W+V+P+ EVSN G L++ REG RV SR +RD+N+ GR++KG ++W+ S A+ YSCLGGS E GS F V SS+V G+M VSSEKKVYDVVLKQAALVKRQ RS +ELEVKP++++PG L LLSEAYDRCGEVCAEYAKTFYLGT LMTPERRRAIWAIYVWCRRTDELVDGPNASHITP ALDRWE RLED+F GRPFDMLDAALSDTV +FPVDIQPF+DMIEGMRMDL KSRY NFDELYLYCYYVAGTVGLMSVP+MGIAP S+ATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAG+VTDKWRNFMKKQI+RAR FFDE++ GV EL ASRWPV A+LLLYR+ILDEIEANDYNNFT+RAYVSKPKK+L LP+AYAK+ P RTSS KT Sbjct: 3 MSVALLWVVSPTSEVSNGTGLLDSVREGNRVFVSSRFLARDRNLMWNGRIKKGGRQRWNFGSLIADPRYSCLGGSRTEKGSSFSVQSSLVASPAGEMTVSSEKKVYDVVLKQAALVKRQLRSTDELEVKPDIVVPGNLGLLSEAYDRCGEVCAEYAKTFYLGTKLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPQALDRWEARLEDIFSGRPFDMLDAALSDTVSRFPVDIQPFRDMIEGMRMDLWKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRNFMKKQIQRARKFFDESEKGVTELDSASRWPVLAALLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYAKSLVPPNRTSSPLAKT 440
Match: A0A1U7W860 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 341/438 (77.85%), Postives = 378/438 (86.30%), Query Frame = 0
Query: 1 MSVAMSWIVTPSLEVSNCFGYLETAREGTRVLDPSRLGSRDKNMRCGGRLEKGKLRKWSSKSFNAEYSYSCLGGSELENGSIFPVHSSMVVRADGDMAVSSEKKVYDVVLKQAALVKRQFRSDEELEVKPEMILPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWELRLEDLFKGRPFDMLDAALSDTVMKFPVDIQPFKDMIEGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPNSQATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKKQIKRARMFFDEAQIGVRELSPASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKPKKILALPVAYAKAFAPTARTSSTFLKT 438 MSVA+ W+V+P+ EVSN G L++ REG RV SR +RD+N+ GR++KG ++W+ S A+ YSCLGGS E GS F V SS+V G+M VSSEKKVYDVVLKQAALVKRQ RS +ELEVKP++++PG L LLSEAYDRCGEVCAEYAKTFYLGT LMTPERRRAIWAIYVWCRRTDELVDGPNASHITP ALDRWE RLED+F GRPFDMLDAALSDTV +FPVDIQPF+DMIEGMRMDL KSRY NFDELYLYCYYVAGTVGLMSVP+MGIAP S+ATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAG+VTDKWRNFMKKQI+RAR FFDE++ GV EL ASRWPV A+LLLYR+ILDEIEANDYNNFT+RAYVSKPKK+L LP+AYAK+ P RTSS KT Sbjct: 3 MSVALLWVVSPTSEVSNGTGLLDSVREGNRVFVSSRFLARDRNLMWNGRIKKGGRQRWNFGSLIADPRYSCLGGSRTEKGSSFSVQSSLVASPAGEMTVSSEKKVYDVVLKQAALVKRQLRSTDELEVKPDIVVPGNLGLLSEAYDRCGEVCAEYAKTFYLGTKLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPQALDRWEARLEDIFSGRPFDMLDAALSDTVSRFPVDIQPFRDMIEGMRMDLWKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRNFMKKQIQRARKFFDESEKGVTELDSASRWPVLAALLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYAKSLVPPNRTSSPLAKT 440
Match Name | Stats | Description |
---|---|---|
Q2VEY0 | E-Value: 0.000e+0, PID: 99.77 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A2I4EBV2 | E-Value: 0.000e+0, PID: 79.63 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A5B6Z4A7 | E-Value: 0.000e+0, PID: 79.04 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
Q078Y5 | E-Value: 0.000e+0, PID: 77.40 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A5N6QYV0 | E-Value: 0.000e+0, PID: 78.72 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A6I9U7U4 | E-Value: 0.000e+0, PID: 78.77 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A5B6Z5C1 | E-Value: 0.000e+0, PID: 78.77 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A1J0A0R6 | E-Value: 0.000e+0, PID: 78.29 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A1S3X651 | E-Value: 0.000e+0, PID: 77.85 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
A0A1U7W860 | E-Value: 0.000e+0, PID: 77.85 | 15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more] |
Name | Description |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |