XM_017391709.1

Resource Type: 
Polypeptide
Name: 
XM_017391709.1
Identifier: 
XM_017391709.1-protein
Sequence: 
MALEAWLLKVKKRVSSTLNSTPANTKHMVKKTSNVGVLALEITSLMSKLI
HLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLL
VKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKM
DKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKL
AWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTI
PVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFE
LNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAM
LPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKW
QSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFER
EMNAKAVLHCDDFNRFVKLHDCAS
Sequence Length: 
474
Sequence Checksum: 
4cfb29c69568f906160bd1d4b9567b65
View location in JBrowse: 
DCARv2_Chr4:20497847..20499271+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017391709.1, derives from mRNA, XM_017391709.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T0H9 ((uncharacterized protein LOC105160556 {ECO:0000313|RefSeq:XP_011076290.1}))

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 318/467 (68.09%), Postives = 383/467 (82.01%), Query Frame = 0
 
Query:    5 AWLLKVKKRVSSTLNS----TPANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFV 467
            AWL+KVKK +S   +S    TP  TK +V K SNVGVLA EI  LMSKL+HLW+SLSDK++A LR ES+ LEGV KI+S+D+ FLL LACAE+ ENL L+ KS+S +SK+C D  L+SF+RLFDEFA +G DP +W++  ++ME+K +KMD++V TTATL++E++EL  +EN +KKSL+S K+++A+IK+ KII+ QQK+ WQRQEVKY KEKSLW R+FD VT LLARSVFT+LARIKLVFG GH    P TSLPR+LSASA VYPSEN   N+ + VSGPL+  K     +   G FELNSKI+KPP+ TLGAAALALHYSNLIIVMEKMIRSP LVG DARDDLY+MLP SIR++LRGRLKGVGF+A++P+LA EW+DAL KILGWLSPLAHNMIKWQSERSFE Q + PKTNVLLLQTLYFANQEKTE AITELLVGLNYIWRFEREMNAKA+  C +FN ++
Sbjct:    2 AWLVKVKKTISHGFDSVRSTTPPTTKKVVIKKSNVGVLAFEIAGLMSKLLHLWQSLSDKSVARLRGESICLEGVRKIISNDDAFLLGLACAELAENLRLVAKSISRISKKCEDSTLRSFERLFDEFANSGRDPNNWLLGSKEMESKTKKMDRFVTTTATLHREMDELLVLENGLKKSLQS-KDNDAAIKEKKIIELQQKILWQRQEVKYLKEKSLWCRSFDTVTSLLARSVFTILARIKLVFGVGHG--FP-TSLPRTLSASALVYPSEN--PNTCAFVSGPLM--KTPPNLQPRQGFFELNSKILKPPSSTLGAAALALHYSNLIIVMEKMIRSPQLVGVDARDDLYSMLPNSIRFALRGRLKGVGFSASNPILAAEWRDALQKILGWLSPLAHNMIKWQSERSFEHQNLVPKTNVLLLQTLYFANQEKTEAAITELLVGLNYIWRFEREMNAKAIFQCSNFNGYL 460
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6BBI2 ((uncharacterized protein LOC111316660 {ECO:0000313|RefSeq:XP_022774458.1}))

HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0
Identity = 318/476 (66.81%), Postives = 381/476 (80.04%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLN---STPANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLHDCA 473
            MALE WL+KVKK +S++L+   S+  N+K + K  SNVGVL+ EI  LMSKL+HLW SLSDK+I  LR ES+SLEGV KIVS+DE FLL LACAEM ENL L+ KS+S +SKRC DLNLQ FDR FDEFA +G D   W++S +DMEAK +KMD+YV  TATLYKE+EELS +EN ++KS + CKE+E+SIK+ KIID QQKL WQRQEVKY KE+SLWNR+FD V  +L RS+FT+L RIKLVFG GH       SLPRSLSASA V+P+EN   N+ + VSGPL   K  ++++ +   FELNSK++KPP  TLGAAALALHY+NLII+MEKMI+SP LVG DARDDLY+MLP SIR SLR RLKGVGF+A DPVLAGEW+ A+G+ILGWLSP+AHNMIKWQ+ERSFEQQ + PKTNVLLLQTL+FAN+EKTE AITELLVGLNYIWRFEREM AKA+  C +FN  + L   +
Sbjct:    1 MALETWLIKVKKTISNSLDTARSSIPNSK-ISKHKSNVGVLSFEIAGLMSKLLHLWNSLSDKSIIRLRDESISLEGVCKIVSNDESFLLGLACAEMAENLRLVAKSISRISKRCQDLNLQCFDRWFDEFANSGHDSHGWVLSSKDMEAKNKKMDRYVTITATLYKEMEELSTIENSLRKSFQ-CKEYESSIKEQKIIDLQQKLLWQRQEVKYLKERSLWNRSFDMVVSMLVRSIFTILGRIKLVFGIGHGYP---PSLPRSLSASATVHPTEN--PNACNFVSGPLESSKCEEKRDMAVSFFELNSKLLKPPPNTLGAAALALHYANLIIIMEKMIKSPQLVGVDARDDLYSMLPSSIRSSLRARLKGVGFSAGDPVLAGEWRTAVGRILGWLSPMAHNMIKWQNERSFEQQNLLPKTNVLLLQTLFFANKEKTEAAITELLVGLNYIWRFEREMTAKALFECSNFNGLLNLQSSS 469
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B416 ((Uncharacterized protein {ECO:0000313|EMBL:MPA63657.1}))

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 315/471 (66.88%), Postives = 383/471 (81.32%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNST-PANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLH 470
            MALE  L+KVK ++SS+ ++   A  K  + K SNVGVLA E+  LMSKL+HLW+SLSDKNI  LR ES+SLEGV KIVS+DE FLL LACAEMVENL L+ KS+S   KRC D NL+SFDRLF+EFA  G DP +W++S ++ME+K +KMD++V  TATLYKE++ELS +EN ++K+++ CKEHEASIK+ KIID +QK+ WQ+QEVKY KE+S+W+R+FD VT LL RS+FTVLARIKLVFG  +A      SLPRSLSASA V+PSEN   NS ++VS PLI         K+  LFE NS I+KPP+ TLGAAALALHY+NLII++EKMIRSP LVG DARDDLY+MLP+SIR SLR RL+GVGF+A+DPVLAGEW+DALG+ILGWLSPLAHNMIKWQSERSFEQQ + PKTNV+LLQTL+FAN++KTE AITELLVGLNYIWRFEREM+AKA+  C +FN F+ L 
Sbjct:    1 MALETLLIKVKTKISSSFDAVLTATPKTKMAKKSNVGVLAFEVAGLMSKLLHLWQSLSDKNIILLRNESISLEGVRKIVSNDEAFLLGLACAEMVENLRLVAKSVSRKCKRCEDANLRSFDRLFNEFANAGRDPHNWVLSGKEMESKNKKMDRFVTITATLYKEMDELSVMENSLRKAIQ-CKEHEASIKEQKIIDLRQKIFWQQQEVKYLKERSIWSRSFDTVTSLLVRSIFTVLARIKLVFGISNA------SLPRSLSASATVHPSEN--PNSCNIVSEPLI---------KTSKLFESNSNILKPPSTTLGAAALALHYANLIIIIEKMIRSPQLVGVDARDDLYSMLPRSIRSSLRARLRGVGFSASDPVLAGEWRDALGRILGWLSPLAHNMIKWQSERSFEQQNLMPKTNVILLQTLFFANRDKTEAAITELLVGLNYIWRFEREMSAKALFECANFNGFLNLQ 453
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835D2X8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8379331.1}))

HSP 1 Score: 630.943 bits (1626), Expect = 0.000e+0
Identity = 315/472 (66.74%), Postives = 374/472 (79.24%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNSTPANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEK--SPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLH 470
            MALE WL+KVK  +S+ L+     T   + K SNVGVLA EI  LMSKL+ LW+SLSDKNI  LR ES++LEGVHKIVS+D  FLL LACAEMVENL L+ KS++  +KRC D  L+ FDRLF+EFA  GCDP  W++SW++MEAK +KM++YV  TATL KE++ELS +E+ + K L+ C +HE++IK+ KIID QQK+ WQ+QEVKY KE SLW+RNFD  T LLARS+FTVLARIKLVFG G     P  SLPRSLS SAAVYPS+ +  ++ + VS PL M K+  +++   + G  E NSK++KPP  TLGA AL+LHY+NLIIVMEKMIRSP LVG DARDDLYAMLP SIR SLR RL+GVGF+ATDPVLAGEWKDALG+ILGWLSPLAHNMIKWQS+RSFEQQ + PKT VLLLQTLYFANQ KTE AITELLVGLNYIWRFEREMNAKA+L C +FN F+ L 
Sbjct:    1 MALETWLIKVKTAISNGLDVVRTTTNEKMAKKSNVGVLAFEIAGLMSKLLQLWQSLSDKNIVRLRHESIALEGVHKIVSNDNAFLLGLACAEMVENLSLIAKSVARFAKRCDDSGLRCFDRLFEEFANLGCDPQSWVLSWKEMEAKQKKMNRYVTLTATLRKEMDELSEIEHGLSKLLQ-CSDHESAIKEKKIIDLQQKVFWQKQEVKYLKESSLWSRNFDMATTLLARSIFTVLARIKLVFGIGQG--CPA-SLPRSLSISAAVYPSDQN-SSACNFVSRPLNMSKHDGKRDLDLTEGFSESNSKLLKPPPTTLGAVALSLHYANLIIVMEKMIRSPQLVGVDARDDLYAMLPTSIRVSLRARLRGVGFSATDPVLAGEWKDALGRILGWLSPLAHNMIKWQSDRSFEQQNLMPKTKVLLLQTLYFANQVKTEAAITELLVGLNYIWRFEREMNAKALLECSNFNGFLNLQ 467
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5Q353 ((Uncharacterized protein {ECO:0000313|EMBL:TKS04538.1}))

HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 311/475 (65.47%), Postives = 374/475 (78.74%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNST-PANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLHDCAS 474
            MALE WL+KVK  +S + +S   +N      K ++VGVLA EI  LMSKL HLW+SLSDKNI  +R +S+SLEGV KIVS+DE FLL LACAEM ENL L+ KS+S +SKRC D  L+ F+RLFD+F   G D   W++SW+DMEAK +KMD+YV  TATLYKE+EELSA+EN ++K+L+ C E E + K+ K++D QQK+ WQRQEVKY KE+SLWNR+FD + ++LA+S+FTVLARIKLVFG  H      TSLPRSLSASA V+P+EN    + ++VSGPL   K    +E S G FE NSK++KPP  TLGAAALALHY+NLIIVMEKMI+SP LVG DARDDLY+MLP SIR SLR RLKGVGF+A+DPVLAGEW+DALG+IL WLSPLAHNMIKWQSERSFEQQ + PKTNVLLLQTL+FAN+EKTE AITELLVGLNYIWRFEREM AKA   C +FN F+  H  ++
Sbjct:    1 MALETWLIKVKTAISHSFDSVITSNPIPKPSKRASVGVLAFEIAGLMSKLFHLWQSLSDKNIIRVRNDSISLEGVRKIVSNDESFLLGLACAEMAENLRLIAKSVSRLSKRCEDSGLRRFERLFDDFTNLGNDANCWVLSWKDMEAKTKKMDRYVTVTATLYKEMEELSALENGLRKALQ-CGELEGTTKEQKVLDLQQKILWQRQEVKYLKERSLWNRSFDTIVLILAKSIFTVLARIKLVFGIAHGYP---TSLPRSLSASATVHPTEN--PTTCNIVSGPLKSSKLEGNKESSNGFFESNSKLLKPPPTTLGAAALALHYANLIIVMEKMIKSPQLVGVDARDDLYSMLPNSIRSSLRARLKGVGFSASDPVLAGEWRDALGRILAWLSPLAHNMIKWQSERSFEQQNLLPKTNVLLLQTLFFANKEKTEAAITELLVGLNYIWRFEREMTAKAFFECANFNGFLNPHQSST 469
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067JEQ7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP22381.1}))

HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 317/466 (68.03%), Postives = 375/466 (80.47%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNS--TPANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFN 464
            MALE WL+KVK  +S  L+S  T A      KK S VGVLA EI  LMSKL HLW+SLSDKNI  LR ES+SLEGV KIVS+DE FLL+LACAE+ ENL L+ KS+S +SKRC D NL+ F+RLFD+FA +G DP  W+++ ++MEAK +KMD+YV  TATLYKE+EELS +E+ +KK+L+   EHE++ K+ KI+D QQK+ WQRQEVKY KE+SLWNR+FD V  +L RS+FTVLARIKLVFG GH      TSLPRSLSASA V+P+EN   N+ S VSGPL   +  + ++ S G FE NSK++KPP  TLGAAALALHY+NLIIVMEKMI+SP LVG DARDDLY+MLP SIR SLR RLKGVGF+A+DPVLAGEW+DALG+ILGWLSP+AHNMIKWQSERSFEQQ + PKTNVLLLQTL+FANQEKTE AITELLVGLNYIWRFEREM AKA+  C +FN
Sbjct:    1 MALETWLIKVKTAISHRLDSVVTSAPIPKASKK-STVGVLAFEIAGLMSKLFHLWQSLSDKNIIRLRNESISLEGVRKIVSNDESFLLALACAEIAENLRLVAKSVSRLSKRCDDANLRRFERLFDDFANSGHDPNSWVLNCKEMEAKNKKMDRYVTITATLYKEMEELSILESGLKKALQ-YSEHESTTKEQKIMDLQQKIFWQRQEVKYLKERSLWNRSFDGVVSMLVRSIFTVLARIKLVFGIGHGYP---TSLPRSLSASATVHPTEN--PNTCSFVSGPLKGSELEENKDLSDGFFESNSKLLKPPETTLGAAALALHYANLIIVMEKMIKSPQLVGVDARDDLYSMLPNSIRSSLRARLKGVGFSASDPVLAGEWRDALGRILGWLSPIAHNMIKWQSERSFEQQNLLPKTNVLLLQTLFFANQEKTEAAITELLVGLNYIWRFEREMTAKALFECANFN 459
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EGK4 ((Uncharacterized protein {ECO:0000313|EMBL:THG14946.1}))

HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 318/476 (66.81%), Postives = 383/476 (80.46%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNS---TPANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCK--EHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIM-IKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLH 470
            MALE WL+KVK  +S++L+S   T A    ++KK S VGVLA EI  LMSKL+HLW+SLSDKNI  LR E++S EGV KIVS+DE  LL LACAE+VENL L+ KS+S +SK+C D +L+SFDRLF +FA TG DP +W++SW+++E K +K+DK +  T TLY+E+EELS +EN ++K L+ CK  EHE SIKQ KIID QQK+ WQRQEVKY KE+S+WNR+FD  + LLARS+FTVLARIKLVFG G  N  P TSLPRSLSASA VYPSEN    + + VSGPL+   KN + ++ + G FE NSKI+KPP+ TLGAAALALHY+NLIIVMEKMIRSPH+VG DARDDLY+MLP SIR  LR RLKGVGF+A+D VLAGEW++ALGKILGWLSPLAHNMIKWQSERSFE Q + PKTNVLLLQTL+FA++EKTE AITELLVGLNYIWRF+REMNAKA+    +FN F+ L 
Sbjct:    1 MALETWLIKVKTAISNSLDSVRGTAAPPTKLIKK-SKVGVLAFEIAGLMSKLLHLWQSLSDKNIIRLRNEALSFEGVRKIVSNDETLLLGLACAEIVENLRLIAKSVSTISKKCEDSSLRSFDRLFIDFANTGRDPHNWVLSWKEIEIKNKKIDKLITATTTLYREMEELSILENSLRKQLQ-CKDKEHEVSIKQQKIIDLQQKILWQRQEVKYLKERSIWNRSFDTASSLLARSIFTVLARIKLVFGIG--NGYP-TSLPRSLSASATVYPSEN--PTACNFVSGPLMKSCKNQENKDSTYGFFESNSKILKPPSSTLGAAALALHYANLIIVMEKMIRSPHMVGVDARDDLYSMLPSSIRSMLRARLKGVGFSASDSVLAGEWREALGKILGWLSPLAHNMIKWQSERSFEHQNLMPKTNVLLLQTLFFASKEKTEAAITELLVGLNYIWRFDREMNAKALFEGTNFNGFLNLQ 469
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M2FAD1 ((Uncharacterized protein {ECO:0000313|EMBL:NUU94352.1}))

HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 311/475 (65.47%), Postives = 374/475 (78.74%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNST-PANTKHMVKKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLHDCAS 474
            MALE WL+KVK  +S + +S   +N      K ++VGVLA EI  LMSKL HLW+SLSDKNI  +R +S+SLEGV KIVS+DE FLL LACAEM ENL L+ KS+S +SKRC D  L+ F+RLFD+F   G D   W++SW+DMEAK +KMD+YV  TATLYKE+EELSA+EN ++K+L+ C E E + K+ K++D QQK+ WQRQEVKY KE+SLWNR+FD + ++LA+S+FTVLARIKLVFG   A   P TSLPRSLSASA V+P+EN    + ++VSGPL   K    +E S G FE NSK++KPP  TLGAAALALHY+NLIIVMEKMI+SP LVG DARDDLY+MLP SIR SLR RLKGVGF+A+DPVLAGEW+DALG+IL WLSPLAHNMIKWQSERSFEQQ + PKTNVLL QTL+FAN+EKTE AITELLVGLNYIWRFEREM AKA   C +FN F+  H  ++
Sbjct:    1 MALETWLIKVKTAISHSFDSVITSNPIPKPSKRASVGVLAFEIAGLMSKLFHLWQSLSDKNIIRVRNDSISLEGVRKIVSNDESFLLGLACAEMAENLRLIAKSVSRLSKRCEDSGLRRFERLFDDFTNLGNDANCWVLSWKDMEAKTKKMDRYVTVTATLYKEMEELSALENGLRKALQ-CGELEGTTKEQKVLDLQQKILWQRQEVKYLKERSLWNRSFDTIVLILAKSIFTVLARIKLVFGI--ARGYP-TSLPRSLSASATVHPTEN--PTTCNIVSGPLKSSKLEGNKESSNGFFESNSKLLKPPPTTLGAAALALHYANLIIVMEKMIKSPQLVGVDARDDLYSMLPNSIRSSLRARLKGVGFSASDPVLAGEWRDALGRILAWLSPLAHNMIKWQSERSFEQQNLLPKTNVLLFQTLFFANKEKTEAAITELLVGLNYIWRFEREMTAKAFFECANFNGFLNPHQSST 469
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4SDE4 ((Uncharacterized protein {ECO:0000313|EMBL:ESR35001.1}))

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 312/475 (65.68%), Postives = 377/475 (79.37%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNSTPANTKHMV--KKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLHDCA 473
            MALE WL+KVK  +SS+ +S P     ++   K SNVGVLA E+  +MSKL+H W++LSDKNI  LR +S+SLEGV KIVS+DE FLL LACAE+ EN+ L+ K++S +SKRC D NL+SFDR F+EFA +G D   W++S +DMEAK +KMD+YV  TATLYKE+EELS +EN +KK+L+ C E+EAS+K+ KI+D QQK+ WQRQEVKY KE+SLWNR+FD V  +L R VFTVLARIKLVFG GH +  P   LPRSLSASA V+P+EN  ++    VSGP IMIK+      S G FE NSKI+KPP  TLGAAAL+LHYSNLII++EKMI+SP LVG DARDDLYAMLP+SIR SLR RLKGVGF+A+DPVLAGEW++ALG+IL WLSPLAHNMIKWQSERSFEQQ + PKTNVLLLQTLYFAN+EKTE AITELLVGLNYIWRFEREM AKA+  C + N  +   + +
Sbjct:    1 MALETWLIKVKSAISSSFDSVPKPKLSVISNNKKSNVGVLAFEVAGIMSKLLHQWQALSDKNIIRLRNDSISLEGVRKIVSNDESFLLGLACAELAENIRLVAKAVSSLSKRCEDSNLRSFDRSFEEFANSGHDSFSWVLSSKDMEAKNKKMDRYVTVTATLYKEMEELSVLENALKKTLQ-CNEYEASVKEQKILDLQQKVIWQRQEVKYLKERSLWNRSFDTVVSILTRHVFTVLARIKLVFGIGH-HGYPAY-LPRSLSASATVHPTENP-NSCNGFVSGP-IMIKS------SDGFFESNSKILKPPATTLGAAALSLHYSNLIIIIEKMIKSPQLVGVDARDDLYAMLPRSIRSSLRARLKGVGFSASDPVLAGEWRNALGRILSWLSPLAHNMIKWQSERSFEQQNLLPKTNVLLLQTLYFANKEKTEAAITELLVGLNYIWRFEREMTAKALFECANLNGLLNFQNSS 464
[Close]
BLAST of XM_017391709.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067FPI9 ((Uncharacterized protein {ECO:0000313|EMBL:KDO65372.1}))

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 312/475 (65.68%), Postives = 377/475 (79.37%), Query Frame = 0
 
Query:    1 MALEAWLLKVKKRVSSTLNSTPANTKHMV--KKTSNVGVLALEITSLMSKLIHLWRSLSDKNIAHLRTESVSLEGVHKIVSSDECFLLSLACAEMVENLGLLVKSLSVMSKRCHDLNLQSFDRLFDEFARTGCDPCHWIMSWRDMEAKIRKMDKYVKTTATLYKELEELSAVENVVKKSLKSCKEHEASIKQLKIIDQQQKLAWQRQEVKYKKEKSLWNRNFDKVTILLARSVFTVLARIKLVFGTGHANTIPVTSLPRSLSASAAVYPSENHFDNSVSMVSGPLIMIKNTKQQEKSPGLFELNSKIIKPPTGTLGAAALALHYSNLIIVMEKMIRSPHLVGFDARDDLYAMLPQSIRWSLRGRLKGVGFAATDPVLAGEWKDALGKILGWLSPLAHNMIKWQSERSFEQQTMTPKTNVLLLQTLYFANQEKTEDAITELLVGLNYIWRFEREMNAKAVLHCDDFNRFVKLHDCA 473
            MALE WL+KVK  +SS+ +S P     ++   K SNVGVLA E+  +MSKL+H W++LSDKNI  LR +S+SLEGV KIVS+DE FLL LACAE+ EN+ L+ K++S +SKRC D NL+SFDR F+EFA +G D   W++S +DMEAK +KMD+YV  TATLYKE+EELS +EN +KK+L+ C E+EAS+K+ KI+D QQK+ WQRQEVKY KE+SLWNR+FD V  +L R VFTVLARIKLVFG GH +  P   LPRSLSASA V+P+EN  ++    VSGP IMIK+      S G FE NSKI+KPP  TLGAAAL+LHYSNLII++EKMI+SP LVG DARDDLYAMLP+SIR SLR RLKGVGF+A+DPVLAGEW++ALG+IL WLSPLAHNMIKWQSERSFEQQ + PKTNVLLLQTLYFAN+EKTE AITELLVGLNYIWRFEREM AKA+  C + N  +   + +
Sbjct:    1 MALETWLIKVKSAISSSFDSVPKPKLSVISNNKKSNVGVLAFEVAGIMSKLLHQWQALSDKNIIRLRNDSISLEGVRKIVSNDESFLLGLACAELAENIRLVAKAVSSLSKRCEDSNLRSFDRSFEEFANSGHDSFSWVLSSKDMEAKNKKMDRYVTVTATLYKEMEELSVLENALKKTLQ-CNEYEASVKEQKILDLQQKVIWQRQEVKYLKERSLWNRSFDTVVSILTRHVFTVLARIKLVFGIGH-HGYPAY-LPRSLSASATVHPTENP-NSCNGFVSGP-IMIKS------SDGFFESNSKILKPPATTLGAAALSLHYSNLIIIIEKMIKSPQLVGVDARDDLYAMLPRSIRSSLRARLKGVGFSASDPVLAGEWRNALGRILSWLSPLAHNMIKWQSERSFEQQNLLPKTNVLLLQTLYFANKEKTEAAITELLVGLNYIWRFEREMTAKALFECANLNGLLNFQNSS 464
Match NameStatsDescription
A0A6I9T0H9E-Value: 0.000e+0, PID: 68.09(uncharacterized protein LOC105160556 {ECO:0000313... [more]
A0A6P6BBI2E-Value: 0.000e+0, PID: 66.81(uncharacterized protein LOC111316660 {ECO:0000313... [more]
A0A5B7B416E-Value: 0.000e+0, PID: 66.88(Uncharacterized protein {ECO:0000313|EMBL:MPA6365... [more]
A0A835D2X8E-Value: 0.000e+0, PID: 66.74(Uncharacterized protein {ECO:0000313|EMBL:KAF8379... [more]
A0A4U5Q353E-Value: 0.000e+0, PID: 65.47(Uncharacterized protein {ECO:0000313|EMBL:TKS0453... [more]
A0A067JEQ7E-Value: 0.000e+0, PID: 68.03(Uncharacterized protein {ECO:0000313|EMBL:KDP2238... [more]
A0A4S4EGK4E-Value: 0.000e+0, PID: 66.81(Uncharacterized protein {ECO:0000313|EMBL:THG1494... [more]
A0A6M2FAD1E-Value: 0.000e+0, PID: 65.47(Uncharacterized protein {ECO:0000313|EMBL:NUU9435... [more]
V4SDE4E-Value: 0.000e+0, PID: 65.68(Uncharacterized protein {ECO:0000313|EMBL:ESR3500... [more]
A0A067FPI9E-Value: 0.000e+0, PID: 65.68(Uncharacterized protein {ECO:0000313|EMBL:KDO6537... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.