Resource Type:
Polypeptide
Name:
XM_017389778.1
Identifier:
XM_017389778.1-protein
Sequence:
MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQV
LGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYI
GHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYV
RGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYL
GVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPEND
LESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRA
SALKLLGKIFQRDKYAQTSGTSKKKVAETSSDSSDDEDTPRALNYRAPLV
TQGIGRLFRCLCNPAFDVDDEEIVYRSK
Sequence Length:
378
Sequence Checksum:
9885281e11272f363fcd6d588a492004
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017389778.1, derives from mRNA, XM_017389778.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8B2Y4 ((chaperone protein dnaJ 10 {ECO:0000313|RefSeq:XP_010270365.1}))
HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 309/384 (80.47%), Postives = 350/384 (91.15%), Query Frame = 0
Match: A0A1U8B2Y4 ((chaperone protein dnaJ 10 {ECO:0000313|RefSeq:XP_010270365.1}))
HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 309/384 (80.47%), Postives = 350/384 (91.15%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKVAE------TSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVK+TEYYDVLGV P+ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDPVQR+AYD+NGKYCIS++TMLDPTAVFALLFGSELFEDY+GHLAVASMASSELA+E DNPE+L+++LKAVQK+RE+KLA LK+ L +YV GD+EGF H A +EA+RLS AFG +ILHTIGYIYERQAAQ+LGKKAIYLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQED+RRQFKMDGSGPEN+LESH++LNKDTLMNSLWKLNVVDIEVTLLHVCQMV+ ET +KKEELK RA ALK+LGKIFQR+K +Q G SKKK +SSDS+ ED+PR L+YR PL+TQGIGRLFRCLCNPAF+VDD+EIVY+SK
Sbjct: 1 MVKDTEYYDVLGVSPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPVQREAYDQNGKYCISRETMLDPTAVFALLFGSELFEDYVGHLAVASMASSELATECDNPEKLHDRLKAVQKEREEKLARILKDFLNRYVHGDKEGFIHHAASEAKRLSDAAFGADILHTIGYIYERQAAQQLGKKAIYLGVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEDVRRQFKMDGSGPENNLESHMQLNKDTLMNSLWKLNVVDIEVTLLHVCQMVLQETNIKKEELKARALALKILGKIFQREKNSQNGGVSKKKNVSDAYEDGSSSDSTSVEDSPRTLSYRTPLITQGIGRLFRCLCNPAFEVDDDEIVYKSK 384
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B998 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 313/387 (80.88%), Postives = 348/387 (89.92%), Query Frame = 0
Match: A0A5J5B998 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 313/387 (80.88%), Postives = 348/387 (89.92%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKVAETSSDSSDD---------EDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKET+YYD+LGV P+AS+E+IRKAYYLKARQVHPDKNP DP+AAERFQVLGEAYQVLSDPVQRD+YDRNGKYCIS++TMLDPTAVF LLFGSELFEDYIGHLAVASMASSELA ESDNPE+L+++LK VQK+RE+KLA LK+ L QYVRGDRE + AE+EAERLSH AFGV+ILHTIGYIY RQAAQELGKKAIYLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQE+ RRQFKMDGSGPEND+ESHLRLNKDTLM+SLWKLNVVDIEVTLLHVCQMV+ E+ VKKEELK RA ALK+LGKIFQR+K ++ GTSKKK+A SD + D ED+PR LNYR PL+TQGIGRLFRCLCNPAFDVDDEEI+YRSK
Sbjct: 1 MVKETDYYDILGVSPSASDEDIRKAYYLKARQVHPDKNPYDPQAAERFQVLGEAYQVLSDPVQRDSYDRNGKYCISRETMLDPTAVFTLLFGSELFEDYIGHLAVASMASSELAGESDNPEKLHDRLKDVQKEREEKLARTLKDFLHQYVRGDREEYLFRAESEAERLSHAAFGVDILHTIGYIYARQAAQELGKKAIYLGVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEETRRQFKMDGSGPENDVESHLRLNKDTLMDSLWKLNVVDIEVTLLHVCQMVLKESNVKKEELKARAMALKILGKIFQREKQTRSGGTSKKKIA---SDINADGSSSDSSDEEDSPRTLNYRTPLITQGIGRLFRCLCNPAFDVDDEEIIYRSK 384
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T3D1 ((chaperone protein dnaJ 10 {ECO:0000313|RefSeq:XP_011074793.1}))
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 308/383 (80.42%), Postives = 347/383 (90.60%), Query Frame = 0
Match: A0A6I9T3D1 ((chaperone protein dnaJ 10 {ECO:0000313|RefSeq:XP_011074793.1}))
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 308/383 (80.42%), Postives = 347/383 (90.60%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKV-----AETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKETEYYD+LGV P+ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDPVQRD YDRNGKYCISK+TMLDPTAVFALLFGSELFEDYIGHLAVASMAS+E A ESDNP++++++LK VQ++RE+KLA KL++ L YVRGD+EGF AE+EAERLSH AFG ILHTIGYIY RQAA +LGKKAIYLGVPF+AEWVRNKGHFWKSQ TAA+GAFQLLQLQEDIRRQFKMDGS PEND+ESHLRLNKDTLMNSLWKLNVVDIE+TLLHVCQMV+ + V+KEEL+LRA ALK+LGK+FQ K Q +GTSKKK+ ++SSDSSD++D+PR+LNYR PL+TQGIGRLFRCLCNPAFDVDDEEIVYR +
Sbjct: 1 MVKETEYYDILGVSPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPVQRDTYDRNGKYCISKETMLDPTAVFALLFGSELFEDYIGHLAVASMASTEFAGESDNPDKVHDRLKVVQREREEKLARKLRDFLHHYVRGDKEGFLKQAESEAERLSHAAFGAEILHTIGYIYTRQAALQLGKKAIYLGVPFVAEWVRNKGHFWKSQFTAAKGAFQLLQLQEDIRRQFKMDGSSPENDMESHLRLNKDTLMNSLWKLNVVDIEITLLHVCQMVLQDNSVRKEELRLRAVALKILGKVFQSQKNMQNAGTSKKKIASADADDSSSDSSDEDDSPRSLNYRTPLLTQGIGRLFRCLCNPAFDVDDEEIVYRGR 383
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2RCP9 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0
Identity = 312/385 (81.04%), Postives = 344/385 (89.35%), Query Frame = 0
Match: A0A7N2RCP9 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0
Identity = 312/385 (81.04%), Postives = 344/385 (89.35%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKK-------VAETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKETEYYDVLG+ P+ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDPVQRD YD+NGK CIS+DTMLDP AVFALLFGSELFE+YIGHLAVASMASSELASESDNPE+L+EKLKAVQ++RE+KLA LK+ L QYV+GD+EGF AE+EA RLS A GV+ILHTIGYIY RQAA ELGKKAIYLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQEDIRRQFKMDGS PEND+ESH+RLNKDTLMNSLWKLNVVDIEVTL+HVCQMV+ E ++KEELK RA ALK+LGKIFQ+ K AQ GTSK K +SSDSS D+D+PR L+YR PL+TQGIGRLFRCLCNPAFDVDDEEIVY+SK
Sbjct: 1 MVKETEYYDVLGISPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPVQRDTYDQNGKNCISRDTMLDPMAVFALLFGSELFEEYIGHLAVASMASSELASESDNPEKLHEKLKAVQREREEKLARSLKSFLNQYVQGDKEGFLWRAESEARRLSGAASGVDILHTIGYIYSRQAALELGKKAIYLGVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEDIRRQFKMDGSAPENDVESHVRLNKDTLMNSLWKLNVVDIEVTLIHVCQMVLRENQIRKEELKARAMALKILGKIFQKGKRAQIGGTSKNKQTADTDDDDGSSSDSSSDDDSPRPLSYRTPLLTQGIGRLFRCLCNPAFDVDDEEIVYKSK 385
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H9D4 ((Molecular chaperone (DnaJ superfamily) {ECO:0000313|EMBL:PIN14125.1}))
HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 311/392 (79.34%), Postives = 348/392 (88.78%), Query Frame = 0
Match: A0A2G9H9D4 ((Molecular chaperone (DnaJ superfamily) {ECO:0000313|EMBL:PIN14125.1}))
HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 311/392 (79.34%), Postives = 348/392 (88.78%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLK---------AVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKVA-----ETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKETEYYD+LGV P+ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDP+QRD YDRNGK+CISK+TMLDPTAVFALLFGSELFEDYIGHLAVASMAS+ELA ESDNPE+++++LK AVQ++RE+KLA KL+N L QYV GDREGF AE+EA+RLSH AFG +LHTIGYIY RQAA +LGKKAIYLGVPF+AEWVRNKGHFWKSQ TAA+GAFQLLQLQED+RR FK+DGSGPEND ESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMV+ E +KKEELKLRA ALK+LGK+FQ K Q +GTSKKK A ++SSDSSD+ED+PR+LNYR PL+TQGIGRLFRCLCNPAFDVDD+EIVYR +
Sbjct: 1 MVKETEYYDILGVSPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPLQRDTYDRNGKHCISKETMLDPTAVFALLFGSELFEDYIGHLAVASMASTELAGESDNPEKVHDRLKFTHHSMLLKAVQREREEKLARKLRNFLHQYVHGDREGFLKQAESEAQRLSHAAFGAEMLHTIGYIYTRQAALQLGKKAIYLGVPFVAEWVRNKGHFWKSQFTAAKGAFQLLQLQEDVRRHFKLDGSGPENDAESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVLQENCIKKEELKLRAVALKILGKVFQSQKDLQNAGTSKKKTALADADDSSSDSSDEEDSPRSLNYRTPLLTQGIGRLFRCLCNPAFDVDDDEIVYRGR 392
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CQK2 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 313/405 (77.28%), Postives = 348/405 (85.93%), Query Frame = 0
Match: E0CQK2 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 313/405 (77.28%), Postives = 348/405 (85.93%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKA---------------------VQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKK------VAETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKETEYYDVLGV P ASEEEIRKAYYLKA+QVHPDKNP+DP AAERFQVLGEAYQVLSDP+QRDAYDRNGKYCISK+TMLDPTAVFALLFGSELFE+YIGHLAVASMASSELA ESDNPE+L++KLKA VQK+RE++LA LK+ L QYV+GD+ GF H AE+EA+RLS FG +ILHTIGY+Y RQAAQELGKK IYLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQEDIRRQFKMDGSGPEND+ESH+R+NKDTLMNSLWKLNVVDIEVTL+HVCQ+V+ E VKKEELK RA ALKLLGKIFQR+K A++ GTSK + +SSDSS +EDTPRAL+YR PL+TQGIGRLFRCLCNPAFDVDDEEIVY+SK
Sbjct: 1 MVKETEYYDVLGVSPTASEEEIRKAYYLKAKQVHPDKNPSDPLAAERFQVLGEAYQVLSDPMQRDAYDRNGKYCISKETMLDPTAVFALLFGSELFENYIGHLAVASMASSELAEESDNPEKLHDKLKACLLGFCALTVCINLLLCIREAVQKEREERLARLLKDFLNQYVQGDKRGFLHCAESEAKRLSDAVFGADILHTIGYVYARQAAQELGKKVIYLGVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEDIRRQFKMDGSGPENDVESHIRMNKDTLMNSLWKLNVVDIEVTLIHVCQLVLQENNVKKEELKARALALKLLGKIFQREKLARSGGTSKSRNVSDINEEGSSSDSSGEEDTPRALSYRTPLITQGIGRLFRCLCNPAFDVDDEEIVYKSK 405
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4TD31 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 306/386 (79.27%), Postives = 348/386 (90.16%), Query Frame = 0
Match: V4TD31 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 306/386 (79.27%), Postives = 348/386 (90.16%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKA--VQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKVA------ETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKETEYYD+LGV P+ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDP QR+AYD+NGKY IS++TMLDPTAVFALLFGSELFEDYIGHLAVASMAS+ELA ESDNPE+LN+KLKA VQ++RE++LA LK+ L QYVRGD++GF AE+E +R+S AFGV+ILHTIGYIY RQAAQELGKKA+YLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQEDIRRQFK+DGSGPEND+E+H+RLNK+TLMNSLWKLNVVDIEVTLLHVCQMV+ E V+KEELK RA ALK LGKIFQ DK + +GTS+KK A SSDSS ++D+PRAL+YR PL+TQGIGRLFRCLCNPAFDVDD+EI+Y+SK
Sbjct: 1 MVKETEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREAYDKNGKYSISRETMLDPTAVFALLFGSELFEDYIGHLAVASMASTELARESDNPEKLNDKLKASVVQREREERLARLLKDFLNQYVRGDKDGFLQRAESEGKRMSAVAFGVDILHTIGYIYSRQAAQELGKKALYLGVPFVAEWVRNKGHFWKSQITAAKGAFQLLQLQEDIRRQFKVDGSGPENDVETHIRLNKETLMNSLWKLNVVDIEVTLLHVCQMVLKENNVRKEELKARAVALKTLGKIFQ-DKQTENAGTSRKKNAADTDDDGNSSDSSSEDDSPRALSYRTPLLTQGIGRLFRCLCNPAFDVDDDEIIYKSK 385
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067GXY2 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 306/386 (79.27%), Postives = 348/386 (90.16%), Query Frame = 0
Match: A0A067GXY2 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 306/386 (79.27%), Postives = 348/386 (90.16%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKA--VQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKVA------ETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKETEYYD+LGV P+ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDP QR+AYD+NGKY IS++TMLDPTAVFALLFGSELFEDYIGHLAVASMAS+ELA ESDNPE+LN+KLKA VQ++RE++LA LK+ L QYVRGD++GF AE+E +R+S AFGV+ILHTIGYIY RQAAQELGKKA+YLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQEDIRRQFK+DGSGPEND+E+H+RLNK+TLMNSLWKLNVVDIEVTLLHVCQMV+ E V+KEELK RA ALK LGKIFQ DK + +GTS+KK A SSDSS ++D+PRAL+YR PL+TQGIGRLFRCLCNPAFDVDD+EI+Y+SK
Sbjct: 1 MVKETEYYDILGVNPSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPFQREAYDKNGKYSISRETMLDPTAVFALLFGSELFEDYIGHLAVASMASTELARESDNPEKLNDKLKASVVQREREERLARLLKDFLNQYVRGDKDGFLQRAESEGKRMSAVAFGVDILHTIGYIYSRQAAQELGKKALYLGVPFVAEWVRNKGHFWKSQITAAKGAFQLLQLQEDIRRQFKVDGSGPENDVETHIRLNKETLMNSLWKLNVVDIEVTLLHVCQMVLKENNVRKEELKARAVALKTLGKIFQ-DKQTENAGTSRKKNAADTDDDGNSSDSSSEDDSPRALSYRTPLLTQGIGRLFRCLCNPAFDVDDDEIIYKSK 385
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M2F108 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 305/382 (79.84%), Postives = 345/382 (90.31%), Query Frame = 0
Match: A0A6M2F108 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 305/382 (79.84%), Postives = 345/382 (90.31%), Query Frame = 0
Query: 1 MVKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKKVA-ET---SSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
MVKE+EYYDVLGV P+ASEEEIRKAYYLKARQVHPDKNP+DP+AAERFQVLGEAYQVLSDPVQRDAYDRNGKYCIS++TMLDPTAVFALLFGSELFEDY+GHL+V SMASSELASES NP++++EKLKAVQK+RE+KLA LK+ L QY +GDR GF AE+EA+RLS AFGV+ILHTIGYIY RQAAQELGKKAIYLGVPF+AEWVRNKGHFWKSQITAA+GAFQLLQLQED+RRQFKMDGSGP ND+ESHL NKDTLMNSLWKLNVVDIE+T++HVCQMV+ E V+KEELK RA ALK+LG+IFQ+++ ++ TSK K A ET DSS +ED+PRAL+YR PL+TQGIGRLFRCLCNPAFDVDDEEIVY+SK
Sbjct: 1 MVKESEYYDVLGVSPSASEEEIRKAYYLKARQVHPDKNPDDPQAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISRETMLDPTAVFALLFGSELFEDYVGHLSVTSMASSELASESGNPDKVHEKLKAVQKEREEKLARFLKDFLNQYAQGDRIGFLRRAESEAKRLSDAAFGVDILHTIGYIYSRQAAQELGKKAIYLGVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEDMRRQFKMDGSGPGNDVESHLLSNKDTLMNSLWKLNVVDIEITVIHVCQMVLKENNVRKEELKARALALKILGRIFQQERQSRNGATSKGKNAVETDDDDDDSSSEEDSPRALSYRTPLLTQGIGRLFRCLCNPAFDVDDEEIVYKSK 382
BLAST of XM_017389778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9EHN9 (Protein-serine/threonine phosphatase {ECO:0000256|ARBA:ARBA00013081} (3.1.3.16 {ECO:0000256|ARBA:ARBA00013081}))
HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0
Identity = 305/384 (79.43%), Postives = 342/384 (89.06%), Query Frame = 0
Match: A0A6P9EHN9 (Protein-serine/threonine phosphatase {ECO:0000256|ARBA:ARBA00013081} (3.1.3.16 {ECO:0000256|ARBA:ARBA00013081}))
HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0
Identity = 305/384 (79.43%), Postives = 342/384 (89.06%), Query Frame = 0
Query: 2 VKETEYYDVLGVIPAASEEEIRKAYYLKARQVHPDKNPNDPRAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISKDTMLDPTAVFALLFGSELFEDYIGHLAVASMASSELASESDNPERLNEKLKAVQKDREDKLAGKLKNILQQYVRGDREGFQHFAETEAERLSHTAFGVNILHTIGYIYERQAAQELGKKAIYLGVPFMAEWVRNKGHFWKSQITAARGAFQLLQLQEDIRRQFKMDGSGPENDLESHLRLNKDTLMNSLWKLNVVDIEVTLLHVCQMVILETGVKKEELKLRASALKLLGKIFQRDKYAQTSGTSKKK-------VAETSSDSSDDEDTPRALNYRAPLVTQGIGRLFRCLCNPAFDVDDEEIVYRSK 378
VKETEYYDVLGV +ASEEEIRKAYYLKARQVHPDKNPNDP+AAERFQVLGEAYQVLSDPVQRDAYDRNGK CIS++TMLDP AVFALLFGSELFEDYIGHLAVASMASSEL+ E+D PE L++KLKAVQK+RE+KLA LK+ L QY++GD+EGF AE+EA RLS+TAFGV+ILHTIGYIY RQAAQELGKKAIYLG+PF+AEWVRNKGHFWKSQ+TAA+GAFQLLQLQEDI+RQ KMDGSGP ND+ESH+RLNKDTLMNSLWKLNVVDIEVTL+HVC MV+ E V+KEELK RA ALKLLGKIFQ +K+ Q+ GTSKKK ++SDSS D+D+PR L+YR PL+TQG GRLFRCLCNPAF VDDEEIVY+SK
Sbjct: 310 VKETEYYDVLGVSSSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQVLGEAYQVLSDPVQRDAYDRNGKNCISRETMLDPMAVFALLFGSELFEDYIGHLAVASMASSELSGENDKPENLHDKLKAVQKEREEKLARSLKSFLNQYIQGDKEGFLQHAESEARRLSNTAFGVDILHTIGYIYSRQAAQELGKKAIYLGMPFLAEWVRNKGHFWKSQLTAAKGAFQLLQLQEDIQRQHKMDGSGPANDVESHIRLNKDTLMNSLWKLNVVDIEVTLMHVCHMVLRENHVRKEELKARAFALKLLGKIFQHEKHEQSGGTSKKKDPADGDDDDGSTSDSSSDDDSPRPLSYRTPLLTQGFGRLFRCLCNPAFAVDDEEIVYKSK 693
| Match Name | Stats | Description |
|---|---|---|
| A0A1U8B2Y4 | E-Value: 0.000e+0, PID: 80.47 | (chaperone protein dnaJ 10 {ECO:0000313|RefSeq:XP_... [more] |
| A0A5J5B998 | E-Value: 0.000e+0, PID: 80.88 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A6I9T3D1 | E-Value: 0.000e+0, PID: 80.42 | (chaperone protein dnaJ 10 {ECO:0000313|RefSeq:XP_... [more] |
| A0A7N2RCP9 | E-Value: 0.000e+0, PID: 81.04 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A2G9H9D4 | E-Value: 0.000e+0, PID: 79.34 | (Molecular chaperone (DnaJ superfamily) {ECO:00003... [more] |
| E0CQK2 | E-Value: 0.000e+0, PID: 77.28 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| V4TD31 | E-Value: 0.000e+0, PID: 79.27 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A067GXY2 | E-Value: 0.000e+0, PID: 79.27 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A6M2F108 | E-Value: 0.000e+0, PID: 79.84 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A6P9EHN9 | E-Value: 0.000e+0, PID: 79.43 | Protein-serine/threonine phosphatase {ECO:0000256|... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |