XM_017388322.1

Resource Type: 
Polypeptide
Name: 
XM_017388322.1
Identifier: 
XM_017388322.1-protein
Sequence: 
MMMMMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLSTTSSLS
SLSIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVC
LVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRI
AAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSY
QAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFG
AGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRL
PFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNV
MSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRA
EVLKVKECVANFEDMRRRSAIWEAPPPLNICELGLSTKS
Sequence Length: 
439
Sequence Checksum: 
5560740142c380c3f85375c9d9bd81fe
View location in JBrowse: 
DCARv2_Chr4:26447964..26450790+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017388322.1, derives from mRNA, XM_017388322.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C2R0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA75340.1}))

HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0
Identity = 290/447 (64.88%), Postives = 350/447 (78.30%), Query Frame = 0
 
Query:    3 MMMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLI-------VFVSLSTTSSLSSL----SIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGLSTK 438
            M+  KNP K+V+Q+TR V DL+WR+LLL+L PLSL+       V  +    + L S     S F   + R++ ++    +   N  ES KNR   +RK ELDRSRIAVCLVGGARRFEL+G SIV+KILKVYP+SDLFLHSPLD N++K S+LK APRIA+V+IFK E +PETESQVRVLTA NSPNGIQGLLQYFNLVEGC+T+I++YQ   NFTY+WIVRTRVDGYWS PLSPDNF+ G Y+VPPGSSYGGLNDRFG GD + S VALSRLSLIP+L+S+GF QLNSE AFKAQLT + +PY  +RLPFC++TDR YD+PP+++GVPVAALSS GPLSGAKCRPCT   SGP V +VM  LDRGWSWT+WANGT+ LCDA  EWE GW ++FDR AGKKLAA RK+   LK+++CV +F +MRRR+  WEAP P  IC LGL ++
Sbjct:    1 MVTLKNPHKIVMQVTRWVSDLDWRVLLLILPPLSLLIFLSLSSVTTNAPAFNRLPSFAPIKSFFYNRNPRQSGSSMFSPYGVQNMNESEKNRWLRERKDELDRSRIAVCLVGGARRFELSGPSIVQKILKVYPNSDLFLHSPLDSNAFKFSLLKIAPRIASVRIFKPEPIPETESQVRVLTAQNSPNGIQGLLQYFNLVEGCLTMIKAYQEHNNFTYNWIVRTRVDGYWSDPLSPDNFVSGHYLVPPGSSYGGLNDRFGVGDLNMSTVALSRLSLIPQLDSAGFRQLNSETAFKAQLTTQSVPYVTQRLPFCVITDRTYDFPPSQYGVPVAALSSPGPLSGAKCRPCTPACSGPCVADVMFGLDRGWSWTDWANGTLQLCDAHAEWEKGWDKVFDRVAGKKLAAGRKQVWALKLEQCVDDFNEMRRRTFNWEAPAPAEICRLGLGSR 447
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B6P2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537427.1}))

HSP 1 Score: 579.711 bits (1493), Expect = 0.000e+0
Identity = 288/446 (64.57%), Postives = 351/446 (78.70%), Query Frame = 0
 
Query:    7 KNPQKLVVQIT---RKVMDLEWRLLLLLLLPLSLIVFVSLSTTSSLSS-----------LSIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGLSTK 438
            KNP K+V+ +    R V DL+WR+LLL+L PLSL++F+ LS+ S+ ++            S F   +T ++ +  S  +   N  ES K++   +RK ELDRSRIAVCLVGGARRFEL+G SIV+KILKVYP+SDLFLHSPLD NS+K S+LK APRIA+V+IF  E +PETESQ RVLTA NSPNGIQGLLQYFNLVEGC+T+I++YQ Q NFTYDW+VRTRVDGYWS+PLSPDNF+ G Y+VPPGSSYGGLNDRFG GD + S VALSRLSLIP+L S+GF+QLNSERAFKAQLT + +PY  KRLPFCI+TDR+YD+PP+++GVPVAALSS GPLSGAKCRPCT   SGP V NVM +LDRGWSWT W+NGT+ LCDA  EWE GW+++FD  AGKKLAA RKR   LK+++C+ +F  MR R+  WEAP P  IC LGL ++
Sbjct:   15 KNPSKIVMHVKSWPRWVSDLDWRVLLLILPPLSLLIFLCLSSVSTTAAPFNRFHSFGPIKSFFNNRTTHQSASPISSPYAAKNMNESEKSQWLRERKDELDRSRIAVCLVGGARRFELSGPSIVQKILKVYPNSDLFLHSPLDSNSFKFSLLKIAPRIASVRIFNPEHIPETESQFRVLTALNSPNGIQGLLQYFNLVEGCLTMIKAYQKQNNFTYDWVVRTRVDGYWSAPLSPDNFVPGHYLVPPGSSYGGLNDRFGIGDLNVSNVALSRLSLIPQLESAGFHQLNSERAFKAQLTTQTVPYITKRLPFCIITDRKYDFPPSQYGVPVAALSSPGPLSGAKCRPCTPACSGPCVANVMFRLDRGWSWTNWSNGTLQLCDAHTEWENGWEKVFDGVAGKKLAATRKRVRALKLEQCIDDFNVMRGRTYGWEAPEPAEICRLGLGSR 460
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PZC9 ((DEP domain-containing mTOR-interacting protein {ECO:0000313|EMBL:PSR99524.1}))

HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 280/435 (64.37%), Postives = 337/435 (77.47%), Query Frame = 0
 
Query:    2 MMMMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLSTTSSLSSLSIFGG-NSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGL 435
            M  M K+ QK+ +Q++R   DL+WR+LL +L PLSL+VF SLS+ S+ + L  F   NS   N    +P    V    +L  R       ELDRSRIAVCLVGGARRFELTG SIVE ILKVYP+SDLFLHSPLD N++K S+LK APRIA+V+IFK   +PETESQ RVLTA NSPNGIQGLLQYF+LVEGC+T+I SYQ Q NFTYDWIVRTRVDGYWS PL P+NF+ GQY+VPPGSSYGGLNDR G GD ++S  ALSRLSLIP+L+++GF QLNSE AFKAQLT + + +  + +PFC+VTDRRY++PPA +GVPVAA+SS GPLSGAKCRPCTV  SGP V  VM  L+RGWSWT+WANGT++LCDA  EWE GW+R FDR AG+++ A RKR   LK+K+CV +FE+M+RR+A WEA P   IC LGL
Sbjct:   14 MTTMPKSSQKIEIQVSRWFSDLDWRVLLWILPPLSLLVFFSLSSLSAFTCLPSFAPLNSLFSNKNQPAPPMARVESEANLWKR-------ELDRSRIAVCLVGGARRFELTGPSIVENILKVYPNSDLFLHSPLDSNAFKFSLLKIAPRIASVRIFKPSPIPETESQYRVLTASNSPNGIQGLLQYFHLVEGCLTMINSYQNQNNFTYDWIVRTRVDGYWSDPLGPENFILGQYLVPPGSSYGGLNDRLGIGDLNTSTAALSRLSLIPKLDAAGFQQLNSESAFKAQLTTQGVRHVTRPVPFCVVTDRRYNFPPAEYGVPVAAMSSAGPLSGAKCRPCTVACSGPCVAKVMGGLNRGWSWTDWANGTLELCDAHAEWEEGWEREFDRAAGEEMVAARKRVLGLKLKQCVDDFEEMKRRAANWEASPAAEICGLGL 441
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4A7F7 ((uncharacterized protein LOC107419845 {ECO:0000313|RefSeq:XP_015884150.1}))

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 275/445 (61.80%), Postives = 345/445 (77.53%), Query Frame = 0
 
Query:    5 MFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLST--TSSLSSLS-----IFGGNSTRENDAASSPRHPYV---NFVESLKNRRDE-----KRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELG 434
            M KNPQK+ +  T+ + DL+WRLL L++ PLSL++F+S+S+  T+  SS +     + G    + N+ + SP    V   NFV S +N+  E     +RK ELDRSRIAVCLVGGARRFELTG SI+EKIL+ YP+SDLFLHSPLDQN++K S+LK APR+A+V+IF+ + +PETESQ+RVLTA NSPNGIQGLLQYFNLVEGC+T+I++YQ Q  F YDWIVRTRVDGYW+S L P NF+ GQY+VPPGS+YGGLNDR G GD ++S+VALSRLSL+PEL+S+GF QLNSE AFKAQL  + + Y  KR PFC+VTDR+Y +PP+RFGVPVAALSS GPLSGAKCRPCT V  GP V +VM  LDRGWSWT W NGT++LCDA  +WE GW+++FDR  GKKL++ RKR   L +K+C+ +F +M+ R+  WEAPP   IC LG
Sbjct:    1 MLKNPQKINMYFTKWISDLDWRLLFLIIPPLSLLIFLSISSVPTNPFSSFAPIRSFLLGHAFQQANNISVSPSGYQVSSPNFVVS-RNKSAEAQSWRRRKDELDRSRIAVCLVGGARRFELTGPSIMEKILREYPNSDLFLHSPLDQNAFKFSLLKSAPRLASVRIFEPKSLPETESQLRVLTAKNSPNGIQGLLQYFNLVEGCLTMIQNYQKQSGFVYDWIVRTRVDGYWNSRLHPRNFIPGQYMVPPGSTYGGLNDRLGIGDLNTSIVALSRLSLVPELDSAGFRQLNSETAFKAQLNTKGVAYVAKRSPFCVVTDRKYSFPPSRFGVPVAALSSPGPLSGAKCRPCTPVCRGPCVADVMMGLDRGWSWTNWGNGTLELCDAHDDWEAGWEKIFDRLVGKKLSSERKRVSGLTMKQCIDDFMEMQSRTVNWEAPPVEEICRLG 444
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AEY0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528814.1}))

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 284/443 (64.11%), Postives = 348/443 (78.56%), Query Frame = 0
 
Query:    6 FKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLSTTS--------SLSSLSIFGGNSTRENDAASSPRHPYV--NFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGLSTK 438
             K+PQK+V+Q++R V DL WR+LLL+L PLSL++F SL + +        SL+ +     N T +  + SS   PY+     ES KNR   +RK ELDRSRIAVCLVGGARRFELTG SIV+KILKVYP+SDLFLHSP+D N++K S+LK APRIA+V+IF  + + ETESQ RVLTA NSPNGIQGLLQYFNLVEGC+T+I+++Q + NFTY WIVRTRVDGYWSSPL P+NF+   Y+VPPGSSYGGLNDRFG GD ++S+VALSRLSLI +L+S+GF QLNSE AFKAQLT + +PY   RLPFC+VTDR+YD+PP+R+GVPVAALSS GPLSGAKCRPC+   SG  V +VM  LDRGWSWT+WANGTM LCDA GEWE  W++ FDR AGKKLAA RKR   LK+++CV +F +MRRR+  W+APP   IC +GL ++
Sbjct:   23 LKSPQKIVMQVSRLVSDLHWRVLLLILPPLSLLIFFSLYSVTTTPFNQFPSLAPIKSLFSNRTPQQ-SGSSMWSPYLLHYMNESEKNRWLRERKDELDRSRIAVCLVGGARRFELTGPSIVQKILKVYPNSDLFLHSPMDPNAFKFSLLKIAPRIASVRIFYPKPIAETESQARVLTASNSPNGIQGLLQYFNLVEGCLTMIKAHQLKNNFTYHWIVRTRVDGYWSSPLGPENFVPAHYLVPPGSSYGGLNDRFGLGDLNTSIVALSRLSLISQLDSAGFLQLNSETAFKAQLTTQGVPYVTNRLPFCVVTDRQYDFPPSRYGVPVAALSSPGPLSGAKCRPCSPACSGTCVADVMFGLDRGWSWTDWANGTMQLCDAHGEWENDWEKEFDRVAGKKLAAARKRVWALKLEQCVDDFNEMRRRTDNWDAPPATEICRVGLGSE 464
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KEU5 ((Uncharacterized protein {ECO:0000313|EMBL:OIT20439.1}))

HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 267/439 (60.82%), Postives = 335/439 (76.31%), Query Frame = 0
 
Query:    4 MMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLS-------TTSSLSSLSIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGL 435
            MM KNP K+  Q T  + DL W+ LLL+L P+ LIV++S S       TTS ++S SIF  + T++                            ELDRSRIAVCLVGGARRFELTG SI++KILKVYP+SDLFLHSPLD  +YKLS+LK  PRIAAVKIF+ + +PETESQ+RVLTA NSPNGIQGLLQYFNLVEGC+T+I++YQ Q NFTYDWI+RTRVDGYWS+ L+PDNF+ G Y+VPPGSSYGGLNDRFG GD+++SVVALSRLS+I +L+S+G+  LNSE AF+AQLT +++PY   RLPFC+VTDR+Y++PP+ +GVPVAALSS GPLSGAKCRPC    +G  +  VM+ LD+GWSWT+WAN +++LCDA  EWE+GW+++FD  AGKKLAA R R E L++ +CV +F +M+ ++A WEAPP   IC LGL
Sbjct:   13 MMLKNPSKIQQQFTIWISDLHWKKLLLILPPMFLIVYISFSSKISPFSTTSVVNSGSIFPASITKD----------------------------ELDRSRIAVCLVGGARRFELTGPSIIQKILKVYPNSDLFLHSPLDSKAYKLSLLKATPRIAAVKIFRPQPIPETESQLRVLTAQNSPNGIQGLLQYFNLVEGCLTMIQAYQKQNNFTYDWIIRTRVDGYWSAKLAPDNFIPGHYLVPPGSSYGGLNDRFGVGDYNTSVVALSRLSMISQLDSAGYRLLNSETAFRAQLTTQQVPYQTMRLPFCVVTDRQYEFPPSHYGVPVAALSSRGPLSGAKCRPCKPACTGSCIEQVMNGLDKGWSWTDWANNSLELCDAHTEWESGWEKIFDGVAGKKLAAARSRIEGLELDQCVNDFAEMKNKTAQWEAPPGSEICSLGL 423
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XGS7 ((uncharacterized protein LOC104233897 {ECO:0000313|RefSeq:XP_009785660.1}))

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 265/439 (60.36%), Postives = 335/439 (76.31%), Query Frame = 0
 
Query:    4 MMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLS-------TTSSLSSLSIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGL 435
            MM KNP K+  Q T  + DL W+ LLL+L P+ L+V++S S       TT+ ++S S+F  + T++                            ELDRSRIAVCLVGGARRFELTG SI++KILKVYP+SDLFLHSPLD  +YKLS+LK A RIAAVKIF+ + +PETESQVRVLTA NSPNGIQGLLQYFNLVEGC+T+I++YQ Q NFTYDWI+RTRVDGYWS+ L+PDNF+ G Y+VPPGSSYGGLNDRFG GD+++SVVALSRLS+I +L+S+G+  LNSE AF+AQLT +++PY   RLPFC+VTDR+Y++PP+ +GVPVAALSS GPLSGAKCRPC    +G  +  VM+ LD+GWSWT+WAN +++LCDA  EWE+GW+++FD  AGKKLAA R R E L++ +CV +F +M+ ++A WEAPP   IC LGL
Sbjct:   13 MMLKNPSKIQQQFTIWISDLHWKKLLLILPPMFLVVYISFSSKISPFSTTTVVNSGSLFPASFTKD----------------------------ELDRSRIAVCLVGGARRFELTGPSIIQKILKVYPNSDLFLHSPLDSKAYKLSLLKAASRIAAVKIFRPQPIPETESQVRVLTAQNSPNGIQGLLQYFNLVEGCLTMIQAYQKQNNFTYDWIIRTRVDGYWSAKLAPDNFIPGHYLVPPGSSYGGLNDRFGVGDYNTSVVALSRLSMISQLDSAGYRLLNSETAFRAQLTTQQVPYQTMRLPFCVVTDRQYEFPPSHYGVPVAALSSRGPLSGAKCRPCKPACTGSCIEQVMNGLDKGWSWTDWANNSLELCDAHTEWESGWEKIFDGVAGKKLAAARSRIEGLELDQCVNDFAEMKNKTAQWEAPPGSEICSLGL 423
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3WZ51 ((uncharacterized protein LOC107759395 {ECO:0000313|RefSeq:XP_016432816.1}))

HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 265/438 (60.50%), Postives = 333/438 (76.03%), Query Frame = 0
 
Query:    4 MMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLSTT------SSLSSLSIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGL 435
            MM  NP K++ Q T+ + DL W+ LLL+L P+ LIV++S S+       S  +S S+F  + T++                            ELDRSRIAVCLVGGARRFELTG SI++KILKVYP+SDLFLHSPLD  +YKLS+LK APRIAAV+IF+ + +PETESQVRVLTA NSPNGIQGLLQYFNLVEGC+T+I+ YQ Q NFTYDWIVRTRVDGYWS+ L+PDNF+ G Y+VPPGSSYGGLNDRFG GD+++SVVALSRLS+I +L+S+G+  LNSE AF+AQLT  ++PY   RLPFC+VTDR+Y+YPP+ +GVPVAALSS GPLSGAKCRPC    +G  +  VM+ LD+GWSWT+WAN +++LCDA  EWE+GW+++FD  AGKKLAA R + E L++ +CV +F +M+ ++A WEAPP   IC LGL
Sbjct:   13 MMLNNPSKILQQFTKWISDLHWKKLLLILPPMFLIVYISFSSNISPFMYSGTTSGSLFPASFTKD----------------------------ELDRSRIAVCLVGGARRFELTGPSIIQKILKVYPNSDLFLHSPLDSKAYKLSLLKVAPRIAAVRIFRPQPIPETESQVRVLTAQNSPNGIQGLLQYFNLVEGCLTMIQDYQKQNNFTYDWIVRTRVDGYWSAKLAPDNFIPGHYLVPPGSSYGGLNDRFGVGDYNTSVVALSRLSMISQLDSAGYRLLNSETAFRAQLTTEQVPYQTMRLPFCVVTDRQYEYPPSHYGVPVAALSSRGPLSGAKCRPCKPACTGSCIEQVMNGLDKGWSWTDWANNSLELCDAHTEWESGWEKIFDGVAGKKLAAARTQIEGLELDQCVNDFAEMKNKTAQWEAPPGSEICSLGL 422
[Close]
BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7D4E4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5740936.1}))

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 273/443 (61.63%), Postives = 337/443 (76.07%), Query Frame = 0
 
Query:    8 NPQKLVVQ----ITRKVMDLEWRLLLLLLLPLSLIVFVS--LSTTSSLSSLSIF-------GGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGLST 437
            +PQK+  +    +T+   DL+WRLL L++L L L+VF+S  ++  SS S +  F         NST  +D +S P     N   S      E R  +LD S+ AVCLVGGARRFELTG SI++ +L+VYP++DLFLHSPLD+N++K S+LK APR+A++KIF+ + + ET+S+VRVLT+ +SPNGIQGLLQYFNLVEGC+TLI+SYQ QKNFTYDWIVRTRVDGYW++PL+P+NF+  QYVVPPGSSYGGLNDR G GD +++ VALSRLS +PEL+S+GF QLNSE AFKAQLT   IPY  KRLPFCIVTDR Y +PP RFGVPVAALSS GPLSGAKCRPC  V  GP V  VMS LDR WSWT W NGT+ LCDA GEWE GW+R+FD  AG +LAA RKR + +K+KECV++FE+M+RR+  WEAP    IC+LGL T
Sbjct:    5 SPQKIDCETKLSLTKWFADLDWRLLFLIVLSLFLLVFISTPVNPFSSFSPIQYFFLFNRNVTDNSTANDDLSSVPVIAPANLSLS-----TEARPLDLDMSKTAVCLVGGARRFELTGPSIIQNVLEVYPNADLFLHSPLDKNAFKFSLLKAAPRLASIKIFEPKPISETDSEVRVLTSADSPNGIQGLLQYFNLVEGCLTLIQSYQKQKNFTYDWIVRTRVDGYWNAPLTPENFIPAQYVVPPGSSYGGLNDRLGVGDLNTTSVALSRLSFVPELDSAGFRQLNSETAFKAQLTTHGIPYLSKRLPFCIVTDREYHFPPNRFGVPVAALSSPGPLSGAKCRPCKPVCEGPCVEAVMSGLDRSWSWTNWENGTLHLCDAHGEWERGWERVFDMVAGDRLAAERKRVKEMKLKECVSDFEEMKRRALNWEAPSAEEICKLGLET 442
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BLAST of XM_017388322.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4A599 ((uncharacterized protein LOC107793902 {ECO:0000313|RefSeq:XP_016471832.1}))

HSP 1 Score: 556.599 bits (1433), Expect = 0.000e+0
Identity = 264/439 (60.14%), Postives = 334/439 (76.08%), Query Frame = 0
 
Query:    4 MMFKNPQKLVVQITRKVMDLEWRLLLLLLLPLSLIVFVSLS-------TTSSLSSLSIFGGNSTRENDAASSPRHPYVNFVESLKNRRDEKRKAELDRSRIAVCLVGGARRFELTGESIVEKILKVYPSSDLFLHSPLDQNSYKLSILKDAPRIAAVKIFKQERVPETESQVRVLTADNSPNGIQGLLQYFNLVEGCITLIRSYQAQKNFTYDWIVRTRVDGYWSSPLSPDNFLKGQYVVPPGSSYGGLNDRFGAGDFDSSVVALSRLSLIPELNSSGFYQLNSERAFKAQLTVRKIPYTFKRLPFCIVTDRRYDYPPARFGVPVAALSSHGPLSGAKCRPCTVVSSGPDVGNVMSKLDRGWSWTEWANGTMDLCDASGEWETGWQRLFDRTAGKKLAAVRKRAEVLKVKECVANFEDMRRRSAIWEAPPPLNICELGL 435
            MM KNP K+  Q T  + DL W+ LLL+L P+ L+V++S S       TT+ ++S S+F  + T++                            ELDRSRIAVCLVGGARRFELTG SI++KILKVYP+SDLFLHSPLD  +YKLS+LK A RIAAVKIF+ + +PETESQVRVLTA NSPNGIQGLLQYFNLVEGC+T+I++YQ Q NFTYDWI+RTRVDGYWS+ L+PDNF+ G Y+VPPGSSYGGLNDRFG GD+++SVVALSRLS+I +L+S+G+  LNSE AF+AQLT +++PY   RLPFC+VTDR+Y++P + +GVPVAALSS GPLSGAKCRPC    +G  +  VM+ LD+GWSWT+WAN +++LCDA  EWE+GW+++FD  AGKKLAA R R E L++ +CV +F +M+ ++A WEAPP   IC LGL
Sbjct:   13 MMLKNPSKIQQQFTIWISDLHWKKLLLILPPMFLVVYISFSSKISPFSTTTVVNSGSLFPASFTKD----------------------------ELDRSRIAVCLVGGARRFELTGPSIIQKILKVYPNSDLFLHSPLDSKAYKLSLLKAASRIAAVKIFRPQPIPETESQVRVLTAQNSPNGIQGLLQYFNLVEGCLTMIQAYQKQNNFTYDWIIRTRVDGYWSAKLAPDNFIPGHYLVPPGSSYGGLNDRFGVGDYNTSVVALSRLSMISQLDSAGYRLLNSETAFRAQLTTQQVPYQTMRLPFCVVTDRQYEFPLSHYGVPVAALSSRGPLSGAKCRPCKPACTGSCIEQVMNGLDKGWSWTDWANNSLELCDAHTEWESGWEKIFDGVAGKKLAAARSRIEGLELDQCVNDFAEMKNKTAQWEAPPGSEICSLGL 423
Match NameStatsDescription
A0A5B7C2R0E-Value: 0.000e+0, PID: 64.88(Uncharacterized protein {ECO:0000313|EMBL:MPA7534... [more]
A0A5J5B6P2E-Value: 0.000e+0, PID: 64.57(Uncharacterized protein {ECO:0000313|EMBL:KAA8537... [more]
A0A2R6PZC9E-Value: 0.000e+0, PID: 64.37(DEP domain-containing mTOR-interacting protein {E... [more]
A0A6P4A7F7E-Value: 0.000e+0, PID: 61.80(uncharacterized protein LOC107419845 {ECO:0000313... [more]
A0A5J5AEY0E-Value: 0.000e+0, PID: 64.11(Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more]
A0A1J6KEU5E-Value: 0.000e+0, PID: 60.82(Uncharacterized protein {ECO:0000313|EMBL:OIT2043... [more]
A0A1U7XGS7E-Value: 0.000e+0, PID: 60.36(uncharacterized protein LOC104233897 {ECO:0000313... [more]
A0A1S3WZ51E-Value: 0.000e+0, PID: 60.50(uncharacterized protein LOC107759395 {ECO:0000313... [more]
A0A7J7D4E4E-Value: 0.000e+0, PID: 61.63(Uncharacterized protein {ECO:0000313|EMBL:KAF5740... [more]
A0A1S4A599E-Value: 0.000e+0, PID: 60.14(uncharacterized protein LOC107793902 {ECO:0000313... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.