Resource Type:
Polypeptide
Name:
XM_017388819.1
Identifier:
XM_017388819.1-protein
Sequence:
MAASATSASTWAKPKIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKY
QTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSH
PLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPH
FEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFP
KAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAM
SEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALT
YNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQ
VVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFH
LWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKS
TRRAIISPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDL
FNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSEL
QIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA
Sequence Length:
588
Sequence Checksum:
6954e99a52def77e797ff09429c6a3b1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017388819.1, derives from mRNA, XM_017388819.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 585/588 (99.49%), Postives = 586/588 (99.66%), Query Frame = 0
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 585/588 (99.49%), Postives = 586/588 (99.66%), Query Frame = 0
Query: 1 MAASATSASTWAKPKIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MAASATSASTWAKP IYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVN NKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTF+SEKDLEKQA
Sbjct: 1 MAASATSASTWAKPNIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNINKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFISEKDLEKQA 588
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 1074.69 bits (2778), Expect = 0.000e+0
Identity = 513/587 (87.39%), Postives = 549/587 (93.53%), Query Frame = 0
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 1074.69 bits (2778), Expect = 0.000e+0
Identity = 513/587 (87.39%), Postives = 549/587 (93.53%), Query Frame = 0
Query: 9 STWAKPKIYSS--QRD-----SPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
+TWAKPKI +S QR+ + RK NVNC++QS PSILHFPKQS YQTP +PTTI QPKHQDSSSS +WNFLQKAASMALDAVEN+I ++E+ HPLPKTADPQVQI+GNFAPV EQPV+H LPVTGKIPECISGVYVRNGANPH EPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERLIQERNLG+ VFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHV+IT GDL+TV RY+FDGQLD+TMIAHPKIDP+T ELIAL+YNVIQKPYLKYFRVSPDGVKS DVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDK KVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWED+ESDEIVVIGSCMTPADSIFNECDEGL+SVLSEIRLNLKTGKSTR+ I+S EDQVNLEAGMVN+NKLGRKTQFAYLAIAEPWPKVSGFAKVDLF G+++KFFYGD+KYGGEPLFLP+NPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATV+LPSRVPYGFHGTF+S KDLE QA
Sbjct: 5 ATWAKPKILTSCPQREVKSQKAYRKNNVNCSLQS-PSILHFPKQSPHIYQTPCVPTTIAQPKHQDSSSSN--QWNFLQKAASMALDAVENVIAAREKEHPLPKTADPQVQIAGNFAPVPEQPVRHRLPVTGKIPECISGVYVRNGANPHLEPTAGHHFFDGDGMVHAVQFKEGAASYACRFTETERLIQERNLGKPVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVEITSSGDLKTVGRYNFDGQLDTTMIAHPKIDPDTKELIALSYNVIQKPYLKYFRVSPDGVKSDDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKNKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDEESDEIVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSTRKPIMSSEDQVNLEAGMVNKNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFTGQVQKFFYGDHKYGGEPLFLPKNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVQLPSRVPYGFHGTFISAKDLESQA 588
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0
Identity = 464/609 (76.19%), Postives = 521/609 (85.55%), Query Frame = 0
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0
Identity = 464/609 (76.19%), Postives = 521/609 (85.55%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN-----------VNCAIQSSPSILHFPKQSKQKYQTP---SIPTT-----IVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MA S+ + +TW KPKI S R+ +N + C++Q+ P ILHFPKQ YQTP +IPT+ I PK ++ SSS++P WN +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV LPVTGKIP+C++GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARG+FGLVDHS GTGVANAGLVYFNNRLLAMSEDDLPYHV++T GDL T R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDK KVSRFG+LDKYAKDGSG+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGLESVLSEIRLNLKTGKSTR+AII + E+QVNLEAGMVNRNKLGRKTQ+AYLAIAEPWPKVSGFAKVDLF GEI KFFYGDNKYGGEPLFLPR+PNS++EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF++ KDL QA
Sbjct: 1 MATSSPATNTWIKPKISMPSSREFGHSSNSISLLKNKPNKITCSLQAPP-ILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSP-WNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVEFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKAIIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 607
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Y7N0 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_009797946.1}))
HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 462/612 (75.49%), Postives = 522/612 (85.29%), Query Frame = 0
Match: A0A1U7Y7N0 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_009797946.1}))
HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 462/612 (75.49%), Postives = 522/612 (85.29%), Query Frame = 0
Query: 1 MAASATSASTWAKPKIYSSQRDSPRKTN---------------VNCAIQSSPSILHFPKQSKQKYQTP-------SIPTTIVQPKHQDSSSSAT-PKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISP-EDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MA++ +++TW KPKI S RD +N +N ++Q+ P ILHFPKQS YQTP S PTTI PK +++SSS T P+WN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E PV H LPVTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFGLVDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+TV R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAIT+ +V+IPDQQVVFK+SEMI+GGSPVVYDK KVSRFGVLDKYAKDG G+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTRRAII EDQVNLEAGMVNRNKLGRKT+FAYLAIAEPWPKVSGFAKVDLF GE++KF YGDNK+GGEPLFLPR+PNS+ EDDGYILAF H+EK WKSELQIVNAMT++LEATVKLP+RVPYGFHGTF++ KDL QA
Sbjct: 1 MASTTPASNTWIKPKI-SMPRDLAYSSNSISLVNKQPNRQLPSINSSLQAPP-ILHFPKQSPN-YQTPKTSTISTSKPTTISYPKQENNSSSTTHPQWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPENPVSHSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPTGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITDKYVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGVLDKYAKDGEGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRAIIQKEEDQVNLEAGMVNRNKLGRKTRFAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKFGGEPLFLPRDPNSKAEDDGYILAFAHNEKEWKSELQIVNAMTMKLEATVKLPTRVPYGFHGTFINAKDLANQA 609
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0N7CTG4 ((9-cis-epoxycarotenoid dioxygenase 3-2 {ECO:0000313|EMBL:AKO22634.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016510306.1}))
HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 462/612 (75.49%), Postives = 522/612 (85.29%), Query Frame = 0
Match: A0A0N7CTG4 ((9-cis-epoxycarotenoid dioxygenase 3-2 {ECO:0000313|EMBL:AKO22634.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016510306.1}))
HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 462/612 (75.49%), Postives = 522/612 (85.29%), Query Frame = 0
Query: 1 MAASATSASTWAKPKIYSSQRDSPRKTN---------------VNCAIQSSPSILHFPKQSKQKYQTP-------SIPTTIVQPKHQDSSSSAT-PKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISP-EDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MA++ +++TW KPKI S RD +N +N ++Q+ P ILHFPKQS YQTP S PTTI PK +++SSS T P+WN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E PV H LPVTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFGLVDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+TV R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAIT+ +V+IPDQQVVFK+SEMI+GGSPVVYDK KVSRFGVLDKYAKDG G+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTRRAII EDQVNLEAGMVNRNKLGRKT+FAYLAIAEPWPKVSGFAKVDLF GE++KF YGDNK+GGEPLFLPR+PNS+ EDDGYILAF H+EK WKSELQIVNAMT++LEATVKLP+RVPYGFHGTF++ KDL QA
Sbjct: 1 MASTTPASNTWIKPKI-SMPRDLAYSSNSISLVNKQPNRQLPSINSSLQAPP-ILHFPKQSPN-YQTPKTSTISTSKPTTISYPKQENNSSSTTHPQWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPENPVSHSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPTGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITDKYVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGVLDKYAKDGEGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRAIIQKEEDQVNLEAGMVNRNKLGRKTRFAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKFGGEPLFLPRDPNSKAEDDGYILAFAHNEKEWKSELQIVNAMTMKLEATVKLPTRVPYGFHGTFINAKDLANQA 609
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7DVZ4 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87531.1}))
HSP 1 Score: 957.207 bits (2473), Expect = 0.000e+0
Identity = 463/609 (76.03%), Postives = 516/609 (84.73%), Query Frame = 0
Match: A0A0A7DVZ4 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87531.1}))
HSP 1 Score: 957.207 bits (2473), Expect = 0.000e+0
Identity = 463/609 (76.03%), Postives = 516/609 (84.73%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN-----------VNCAIQSSPSILHFPKQSKQKYQTP---SIPTT-----IVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MA S+ + +TW KPKI S R+ +N + C++Q+ P ILHFPKQ YQTP +IPT+ I PK ++ SSS++P WN +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV LPVTGKIP+C++GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL QE+ LGR VFPKAIGELHGHSGIARL LFYARG+FGLVDHS GTGVANAGLVYFNNRLLAMSEDDLPYHV++T GDL T R FDGQL STMI HPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI GGSPVVYDK KVSRFG+LDKYAKDGSG+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGLESVLSEIRLNLKTGKSTR+AII + E+QVNLEAGMVNRNKLGRKTQ+AYLAIAEPWPKVSGFAKVDLF GEI KFFYGDNKYGGEPLFLPR+PNS++EDDGYILAFVHDEK WKSELQIVNAMTL LEATVKLPSRVPYGFHGTF++ KDL QA
Sbjct: 1 MATSSPATNTWIKPKISMPSSREFGHSSNSISLLKNKPNKITCSLQAPP-ILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSP-WNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLTQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRVDFDGQLKSTMIVHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMILGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKAIIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLRLEATVKLPSRVPYGFHGTFINAKDLANQA 607
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W5QL26 ((9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|EMBL:AFO85470.1}))
HSP 1 Score: 956.436 bits (2471), Expect = 0.000e+0
Identity = 461/609 (75.70%), Postives = 520/609 (85.39%), Query Frame = 0
Match: W5QL26 ((9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|EMBL:AFO85470.1}))
HSP 1 Score: 956.436 bits (2471), Expect = 0.000e+0
Identity = 461/609 (75.70%), Postives = 520/609 (85.39%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN-----------VNCAIQSSPSILHFPKQSKQKYQTP---SIPTT-----IVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MA S+ + +TW KPKI S R+ +N + C++Q+ P ILHFPKQ YQTP +IPT+ I PK ++ SSS++P N +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV LPVTGKIP+C++GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARG+FGLVDHS GTGVANAGLVYFNNRLLAMSEDDLPYHV++T GDL T R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDK KVSRFG+LDKYAKDGSG+KWVEVPDCFCFHLWNAWE+ E+DE+VVIGSCMTP DSIFNECDEGLESVLSEIRLNLKTGKSTR+A+I + E+QVNLEAGMVNRNKLGRKTQ+AYLAIAEPWPKVSGFAKVDLF GEI KFFYGDNKYGGEPLFLPR+PNS++EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF++ KDL QA
Sbjct: 1 MATSSPATNTWIKPKISMPSSREFGHSSNSISLLKNKPNKITCSLQAPP-ILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSP-LNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDELVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKALIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 607
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WEP9 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|EMBL:PHT43711.1}))
HSP 1 Score: 956.051 bits (2470), Expect = 0.000e+0
Identity = 458/607 (75.45%), Postives = 515/607 (84.84%), Query Frame = 0
Match: A0A2G2WEP9 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|EMBL:PHT43711.1}))
HSP 1 Score: 956.051 bits (2470), Expect = 0.000e+0
Identity = 458/607 (75.45%), Postives = 515/607 (84.84%), Query Frame = 0
Query: 7 SASTWAKPK---------IYSS--------QRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSI-------PTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
+ +TW KPK ++SS QR P N+NC++Q+ P +LHFPKQS YQTP PTT QPK +++++++T KWN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E+PV L VTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FKDG ASYACR+TETER +QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFG+VDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+T R+ F+GQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S DG KS DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDKEKVSRFGVLDKYAKDGSG+KW+EVPDCFCFHLWNAWED++ DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTR+ II + E+QVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDL GE+ KF YGDNKYGGEPLFLPR+ NS+ EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF++ KDL QA
Sbjct: 2 ATNTWIKPKLSMPSSKEFVFSSNSFPLIKNQRQIP---NINCSLQAPP-LLHFPKQSTTTYQTPKTNTISTPKPTTTSQPKQENNTNTSTCKWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPEKPVTQSLQVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKDGSASYACRFTETERFVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGIVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRFDFNGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKDGEKSDDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKEKVSRFGVLDKYAKDGSGLKWIEVPDCFCFHLWNAWEDEDCDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKTIIQNEEEQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLLTGEVHKFIYGDNKYGGEPLFLPRDSNSQAEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 604
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8F8J6 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016552564.1}))
HSP 1 Score: 954.51 bits (2466), Expect = 0.000e+0
Identity = 458/607 (75.45%), Postives = 515/607 (84.84%), Query Frame = 0
Match: A0A1U8F8J6 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016552564.1}))
HSP 1 Score: 954.51 bits (2466), Expect = 0.000e+0
Identity = 458/607 (75.45%), Postives = 515/607 (84.84%), Query Frame = 0
Query: 7 SASTWAKPKI---------YSS--------QRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSI-------PTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAII-SPEDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
+ +TW KPK+ +SS QR P N+NC++Q+ P +LHFPKQS YQTP PTT QPK +++++++T KWN +QKAA+MALDAVE+ + E HPLPKTADP+VQISGNFAPV E+PV L VTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FKDG ASYACR+TETER +QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFG+VDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+T RY F+GQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S DG KS DV+I + DPTMMHDFAITE FVVIPDQQVVFK+SEMI+GGSPVVYDKEKVSRFGVLDKYAKDGSG+KW+EVPDCFCFHLWNAWED++ DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTR+ II + E+QVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDL GE+ KF YGDNKYGGEPLFLPR+ +S+ EDDGYILAFVHDEK WKSELQIVNAMTL+LEATVKLPSRVPYGFHGTF++ KDL QA
Sbjct: 2 ATNTWIKPKLSMPSSKEFGFSSNSFPLIKNQRQIP---NINCSLQAPP-LLHFPKQSTTTYQTPKTNTISTPKPTTTSQPKQENNTNTSTCKWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPEKPVTQSLQVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKDGSASYACRFTETERFVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGIVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRYDFNGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKDGEKSDDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKEKVSRFGVLDKYAKDGSGLKWIEVPDCFCFHLWNAWEDEDCDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKTIIQNEEEQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLLTGEVHKFIYGDNKYGGEPLFLPRDSSSQAEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 604
BLAST of XM_017388819.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0N7CUA2 ((9-cis-epoxycarotenoid dioxygenase 3-1 {ECO:0000313|EMBL:AKO22633.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016478117.1}))
HSP 1 Score: 953.74 bits (2464), Expect = 0.000e+0
Identity = 461/615 (74.96%), Postives = 524/615 (85.20%), Query Frame = 0
Match: A0A0N7CUA2 ((9-cis-epoxycarotenoid dioxygenase 3-1 {ECO:0000313|EMBL:AKO22633.1}) (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like {ECO:0000313|RefSeq:XP_016478117.1}))
HSP 1 Score: 953.74 bits (2464), Expect = 0.000e+0
Identity = 461/615 (74.96%), Postives = 524/615 (85.20%), Query Frame = 0
Query: 1 MAASATSASTWAKPKI-YSSQRDSPRKTN---------------VNCAIQSSPSILHFPKQSKQKYQTP-------SIPTTIVQPKHQDSSSSAT---PKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISP-EDQVNLEAGMVNRNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFVSEKDLEKQA 588
MA++ +++TW KPK+ S RD +N +N ++Q+ P ILHFPKQS YQTP S PTTI PK + ++SS++ P+WN +QKAA+MALDAVE+++ E HPLPKTADP+VQISGNFAPV E PV H LPVTGKIP+C+ GVYVRNGANP FEPT GHHFFDGDGMVHAV+FK+G ASYACR+TETERL+QE+ LGR VFPKAIGELHGHSGIARL LFYARGLFGLVDHS+GTGVANAGLVYFNNRLLAMSEDDLPYHV++TP GDL+TV R+ FDGQL STMIAHPK+DP + EL AL+Y+VIQKPYLKYFR S +G KS+DV+I + DPTMMHDFAITE FV+IPDQQVVFK+SEMI+GGSPVVYDK KVSRFGVLDKYAKDG G+KWVEVPDCFCFHLWNAWE+ E+DEIVVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKSTRRAII EDQVNLEAGMVNRNKLGRKT+FAYLAIAEPWPKVSGFAKVDLF GE++KF YGDNK+GGEPLFLPR+PNS+ EDDGYILAFVH+EK WKSELQIVNAMT++LEATVKLP+RVPYGFHGTF++ KD+ QA
Sbjct: 1 MASTTPASNTWIKPKLSMPSSRDLAYSSNSISLVKKQPNRQLPSINSSLQAPP-ILHFPKQSPN-YQTPKTTTIPTSKPTTISYPKQESTNSSSSTTSPQWNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVSHSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSRGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPTGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGVLDKYAKDGEGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRAIIQKEEDQVNLEAGMVNRNKLGRKTRFAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKFGGEPLFLPRDPNSKAEDDGYILAFVHNEKEWKSELQIVNAMTMKLEATVKLPTRVPYGFHGTFINAKDMANQA 613
| Match Name | Stats | Description |
|---|---|---|
| Q2VEW8 | E-Value: 0.000e+0, PID: 99.49 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| Q2VEW9 | E-Value: 0.000e+0, PID: 87.39 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| A0A0A7DW45 | E-Value: 0.000e+0, PID: 76.19 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
| A0A1U7Y7N0 | E-Value: 0.000e+0, PID: 75.49 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A0N7CTG4 | E-Value: 0.000e+0, PID: 75.49 | (9-cis-epoxycarotenoid dioxygenase 3-2 {ECO:000031... [more] |
| A0A0A7DVZ4 | E-Value: 0.000e+0, PID: 76.03 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
| W5QL26 | E-Value: 0.000e+0, PID: 75.70 | (9-cis-epoxy-carotenoid dioxygenase {ECO:0000313|E... [more] |
| A0A2G2WEP9 | E-Value: 0.000e+0, PID: 75.45 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A1U8F8J6 | E-Value: 0.000e+0, PID: 75.45 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A0N7CUA2 | E-Value: 0.000e+0, PID: 74.96 | (9-cis-epoxycarotenoid dioxygenase 3-1 {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |