XM_017396654.1

Resource Type: 
Polypeptide
Name: 
XM_017396654.1
Identifier: 
XM_017396654.1-protein
Sequence: 
MSHHVSAVITNNTYTNNLNHLLDKFPLSFSATLSTTLKQQQQQQHPLSRS
TKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNK
PLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDW
YETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFD
FPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDG
LSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQ
DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKI
LKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEG
AVLSGKLCAQAILQDHESLLSRRKQVLAEATAV
Sequence Length: 
433
Sequence Checksum: 
8a251dfd20646d8c1f9a0e76298b43a7
View location in JBrowse: 
DCARv2_Chr5:197436..207038-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017396654.1, derives from mRNA, XM_017396654.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VER7 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 301/310 (97.10%), Postives = 305/310 (98.39%), Query Frame = 0
 
Query:    1 MSHHVSAVITNNTYTNNLNHLLDKFPLSFSATLSTTLKQQQQQQHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
            MSHHVSAVITNNTYTNNLNHLLDKFPLSFSATLSTTLKQQQQQQHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQ+ + S +  +
Sbjct:    1 MSHHVSAVITNNTYTNNLNHLLDKFPLSFSATLSTTLKQQQQQQHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQEKHGSKMAFL 310

HSP 2 Score: 274.248 bits (700), Expect = 9.735e-84
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV
Sbjct:  441 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 573
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QZE1 (Amino_oxidase domain-containing protein {ECO:0000259|Pfam:PF01593})

HSP 1 Score: 509.99 bits (1312), Expect = 8.461e-178
Identity = 256/386 (66.32%), Postives = 301/386 (77.98%), Query Frame = 0
 
Query:   51 TKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELVFAPAEEWISRSDSDIIDATMTEL---ARLFPDEIAADQSKAKIL--KYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEAT 431
            +  +RTR    PL +V C+D+PRP+++NT+ FLEAAYLSS F T+ RP KPL VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMP+KPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEK+KFA+GLLPA++GGQ+YVEAQDG +V+DWMRKQGIPDRVT EVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +     E +     D I +   E+   +R+   E+  D +    L    +V++    V+ T                    AGDYTKQ+YLASMEGAVLSGK CAQAI+QD+E L++  ++ LA A+
Sbjct:   61 SNISRTRKGVSPL-QVVCMDFPRPELENTVNFLEAAYLSSSFRTSPRPTKPLKVVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKIKFAIGLLPAMLGGQSYVEAQDGFTVKDWMRKQGIPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVDHIQSLGGEVRLNSRIQNIELNHDGTVKSFLLTNGNVIEGDAYVFATP-------------------AGDYTKQKYLASMEGAVLSGKFCAQAIVQDYELLIAGGQRRLAPAS 426
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6H2AC76 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 476.478 bits (1225), Expect = 2.245e-162
Identity = 233/309 (75.40%), Postives = 262/309 (84.79%), Query Frame = 0
 
Query:    2 SHHVSAVITNNTYTNNLNHLLDKFPLSFSATLSTTLKQQQQQQHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
            S H+++  + N  ++   H +D   L+F  + +      Q+ Q P  RS   TRT+    PL KV C+DYPRP++DNT  FLEAAYLSS F T+ RP KPL +VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFP+VLPAPLNGIWAILKNNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDGLSV+DWMRKQGIPDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +
Sbjct:   23 STHINSRDSFNISSSGGGHQIDH-ALAFGRSDAMG----QRLQFPSLRSF-ITRTKKNVSPL-KVVCIDYPRPELDNTSNFLEAAYLSSTFRTSPRPAKPLKIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPDVLPAPLNGIWAILKNNEMLTWPEKVKFAIGLLPAMLGGQAYVEAQDGLSVKDWMRKQGIPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFL 324

HSP 2 Score: 239.195 bits (609), Expect = 2.984e-70
Identity = 114/133 (85.71%), Postives = 126/133 (94.74%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            DPN+SMLELVFAPAEEWIS SDSDIIDATM+EL+RLFPDEIAADQSKAKILKYHVVKTPRSVYKT+PDCEPCRPLQ+SP EGFYLAGDYTKQ+YLASMEGAVLSGK CAQAI+QD+E LL+ R +V+AEA+ V
Sbjct:  455 DPNRSMLELVFAPAEEWISCSDSDIIDATMSELSRLFPDEIAADQSKAKILKYHVVKTPRSVYKTVPDCEPCRPLQRSPFEGFYLAGDYTKQKYLASMEGAVLSGKFCAQAIVQDYE-LLAARGEVVAEASLV 586
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2HXJ7 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 475.707 bits (1223), Expect = 3.021e-162
Identity = 228/284 (80.28%), Postives = 249/284 (87.68%), Query Frame = 0
 
Query:   27 LSFSATLSTTLKQQQQQQHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
            LSF    S T       Q PL+RS   T+ R R+   LKV CVDYPRPD+DNT  F+EAAYLSS F  + RP+KPLN+VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKD DGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFP+VLPAPLNGIWAIL+NNEMLTWPEKVKFA+GLLPA++GGQ YVEAQDGLSVQDWMR+QGIPDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +
Sbjct:   33 LSFGRADSIT-----GHQFPLARSYSSTK-RGRNVTPLKVVCVDYPRPDLDNTSNFMEAAYLSSIFRASPRPSKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQDWMRQQGIPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKIAFL 310

HSP 2 Score: 239.965 bits (611), Expect = 1.379e-70
Identity = 114/133 (85.71%), Postives = 127/133 (95.49%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            DPN+SMLELVFAPAEEWISRSDSDIIDATM+EL+RLFPDEIAADQSKAKILKYHVVKTPRSVYKT+PDCEPCRPLQ+SPIEGFYLAGDYTKQ+YLASMEGAVLS K CAQAI+QD++ LL+ R +V+AEA+ V
Sbjct:  441 DPNRSMLELVFAPAEEWISRSDSDIIDATMSELSRLFPDEIAADQSKAKILKYHVVKTPRSVYKTVPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSEKFCAQAIVQDYD-LLAARGEVIAEASLV 572
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V5K782 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}) (Fragment))

HSP 1 Score: 474.552 bits (1220), Expect = 4.375e-162
Identity = 223/268 (83.21%), Postives = 245/268 (91.42%), Query Frame = 0
 
Query:   43 QQHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
             Q PL+RS  ++  R R+   LKV CVDYPRPD+DNT  FLEAAYLSS F  + RP+KPLN+VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKD DGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFP+VLPAPLNGIWAIL+NNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDGLSVQDWMR++GIPDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +
Sbjct:   39 HQFPLARS--YSTKRGRNVTPLKVVCVDYPRPDLDNTSNFLEAAYLSSTFRASPRPSKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQAYVEAQDGLSVQDWMRQRGIPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFL 304

HSP 2 Score: 233.417 bits (594), Expect = 2.669e-68
Identity = 108/119 (90.76%), Postives = 117/119 (98.32%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESL 419
            DPN+SMLELVFAPAEEWISRSDSDIIDATM+EL+RLFPDEIAADQSKAKILKYHVVKTPRSVYKT+PDCEPCRPLQ+SPIEGFYLAGDYTKQ+YLASMEGAVLSGK CAQAI+QD++ L
Sbjct:  435 DPNRSMLELVFAPAEEWISRSDSDIIDATMSELSRLFPDEIAADQSKAKILKYHVVKTPRSVYKTVPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCAQAIVQDYDLL 553
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2D3C328 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 474.552 bits (1220), Expect = 1.042e-161
Identity = 229/292 (78.42%), Postives = 251/292 (85.96%), Query Frame = 0
 
Query:   23 DKFPLSFSATLSTTLKQQQQQQH----PLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
            D F ++   T   +  Q     H    P +RS   TRT+    PL KV C+DYPRP++DNT  FLEAAYLSS F T+ RP KPL +VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFP+VLPAPLNGIWAIL+NNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +
Sbjct:   30 DSFNITSGKTDVLSFGQSDTMGHRLQFPGARSF-ITRTKKNVCPL-KVVCIDYPRPELDNTSNFLEAAYLSSVFRTSPRPAKPLKIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFL 319

HSP 2 Score: 237.269 bits (604), Expect = 1.802e-69
Identity = 112/133 (84.21%), Postives = 127/133 (95.49%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            DPN+SMLELVFAPAEEWISRSDSDIIDATM+EL++LFPDEIAAD SKAK+LKYHVVKTPRSVYKT+PDCEPCRPLQ+SPIEGFYLAGDYTKQ+YLASMEGAVLSGK CAQAI+QD+ +LL+ R ++LAEA+ V
Sbjct:  450 DPNRSMLELVFAPAEEWISRSDSDIIDATMSELSKLFPDEIAADGSKAKLLKYHVVKTPRSVYKTVPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCAQAIVQDY-NLLAARGEMLAEASLV 581
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6L7G7 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 473.781 bits (1218), Expect = 1.917e-161
Identity = 227/285 (79.65%), Postives = 251/285 (88.07%), Query Frame = 0
 
Query:   44 QHPLSRSTKFTRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELVFAPAEEWISRSDSDIIDA 328
            Q P +RS  FT    ++   LKV CVDYPRPD+DNT  FLEAAYLSS F T+ RP+KPL +VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFP+VLPAPLNGI+AIL+NNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +     E + +   D I++
Sbjct:   55 QFPSARS--FTPRSKKNVSPLKVVCVDYPRPDLDNTSNFLEAAYLSSTFRTSPRPSKPLKIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPDVLPAPLNGIFAILRNNEMLTWPEKVKFAIGLLPAMLGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGSPPERLCKPIVDHIES 337

HSP 2 Score: 239.195 bits (609), Expect = 3.303e-70
Identity = 113/133 (84.96%), Postives = 127/133 (95.49%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            DPNKSMLELVFAPAEEWISRSD+DIIDATM+EL+RLFPDEIAADQSKAKILKY VVKTPRSVYKT+PDCEPCRPLQ+SPI+GFYL+GDYTKQ+YLASMEGAVLSGK CAQAILQD+E +L+ R +V+AEA+ V
Sbjct:  450 DPNKSMLELVFAPAEEWISRSDTDIIDATMSELSRLFPDEIAADQSKAKILKYKVVKTPRSVYKTVPDCEPCRPLQRSPIQGFYLSGDYTKQKYLASMEGAVLSGKFCAQAILQDYE-MLATRGEVVAEASLV 581
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z6N503 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 472.626 bits (1215), Expect = 4.487e-161
Identity = 230/312 (73.72%), Postives = 263/312 (84.29%), Query Frame = 0
 
Query:    1 MSHHVSAVITNNTYTNNLNHLLDKFPLSFSATLSTTLKQQQQQQHPLSRSTKFTRT-RPRSHPL-LKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
            +S   S++ +NNT +           LSFS ++S  L          S ST+FT++ R R+H   LKV C+DYPRP+IDNT+ F+EAAYLSS F    RP KPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKD+DGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMP+KPGEFSRFDFPEVLP+P+NGIWAIL+NNEMLTWPEK+KFA+GLLPAI+GGQAYVEAQDGLSV++WMRKQGIP+RVT EVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +
Sbjct:   17 ISKFSSSINSNNTIS-----------LSFSGSVSMGLNLAS------SSSTRFTKSNRFRNHGSPLKVVCIDYPRPEIDNTVNFIEAAYLSSTFRANPRPTKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPEVLPSPINGIWAILRNNEMLTWPEKIKFAIGLLPAILGGQAYVEAQDGLSVKEWMRKQGIPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFL 311

HSP 2 Score: 235.343 bits (599), Expect = 7.052e-69
Identity = 109/133 (81.95%), Postives = 126/133 (94.74%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            +PN+SMLELVFAPAEEWISRSD DIIDATM+ELA+LFPDEI+ADQSKAKILKYHVVKTPRSVYKT+P+CEPCRP+Q+SPIEGFYLAGDYTKQ+YLASMEGAVLSGKLCAQAI+QD E L +R ++ +A+A+ V
Sbjct:  442 NPNQSMLELVFAPAEEWISRSDEDIIDATMSELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLSTRGQKRIAQASIV 574
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4U509 (Amino_oxidase domain-containing protein {ECO:0000259|Pfam:PF01593} (Fragment))

HSP 1 Score: 461.455 bits (1186), Expect = 4.661e-161
Identity = 226/278 (81.29%), Postives = 244/278 (87.77%), Query Frame = 0
 
Query:   27 LSFSATLST-TLKQQQQQQHPLSRSTKF---TRTRPRSHPLLKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQ 300
            L FS + S   L+   +   P+ +S K    T TR    P  KV CVDYPRPDIDNT  FLEAAYLSS F T+ RP+KPL VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGI AIL+NNEMLTWPEKVKFA+GLLPAIIGGQAYVEAQDGL+VQ+WMRKQG+PDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ
Sbjct:    3 LCFSVSESAFNLRYGFRDSEPMGQSLKIRVKTGTRKGFCPS-KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ 279
[Close]
BLAST of XM_017396654.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V5RCN3 (Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368016} (1.3.5.5 {ECO:0000256|RuleBase:RU368016}))

HSP 1 Score: 473.011 bits (1216), Expect = 4.831e-161
Identity = 220/256 (85.94%), Postives = 240/256 (93.75%), Query Frame = 0
 
Query:   56 TRPRSHPL-LKVSCVDYPRPDIDNTLPFLEAAYLSSFFSTASRPNKPLNVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKVKFALGLLPAIIGGQAYVEAQDGLSVQDWMRKQGIPDRVTTEVFVAMSKSLNFINPDELSMQCVLIALNRFLQDPNKSMLELV 310
            TRPR     LKV C+DYPRPD+++T+ FLEAAYLSS F T+ RP+KPL VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEK+KFA+GL+PAI+GGQAYVEAQDGLSV+DWMRKQGIPDRVTTEVF+AMSK+LNFINPDELSMQC+LIALNRFLQ+ + S +  +
Sbjct:   64 TRPRKDVCPLKVVCIDYPRPDLESTVNFLEAAYLSSAFRTSRRPDKPLKVVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILKNNEMLTWPEKIKFAIGLIPAILGGQAYVEAQDGLSVKDWMRKQGIPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFL 319

HSP 2 Score: 236.498 bits (602), Expect = 3.217e-69
Identity = 110/133 (82.71%), Postives = 125/133 (93.98%), Query Frame = 0
 
Query:  301 DPNKSMLELVFAPAEEWISRSDSDIIDATMTELARLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQKSPIEGFYLAGDYTKQRYLASMEGAVLSGKLCAQAILQDHESLLSRRKQVLAEATAV 433
            DPN+SMLELVFAPAEEWIS SD +IIDATM ELA+LFPDEI+ADQSKAKILKYHVVKTPRSVYKT+P+CEPCRPLQ+SP+EGFYL+GDYTKQ+YLASMEGAVLSGKLCAQAI+QD+E L+SR +  LAEA+ V
Sbjct:  450 DPNRSMLELVFAPAEEWISCSDEEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPVEGFYLSGDYTKQKYLASMEGAVLSGKLCAQAIVQDYEKLVSREQGKLAEASVV 582
Match NameStatsDescription
Q2VER7E-Value: 9.735e-84, PID: 97.10Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
A0A5N6QZE1E-Value: 8.461e-178, PID: 66.32Amino_oxidase domain-containing protein {ECO:00002... [more]
A0A6H2AC76E-Value: 2.245e-162, PID: 75.40Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
Q2HXJ7E-Value: 3.021e-162, PID: 80.28Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
V5K782E-Value: 4.375e-162, PID: 83.21Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
A0A2D3C328E-Value: 1.042e-161, PID: 78.42Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
A0A2J6L7G7E-Value: 1.917e-161, PID: 79.65Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
A0A2Z6N503E-Value: 4.487e-161, PID: 73.72Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
V4U509E-Value: 4.661e-161, PID: 81.29Amino_oxidase domain-containing protein {ECO:00002... [more]
V5RCN3E-Value: 4.831e-161, PID: 85.94Phytoene dehydrogenase {ECO:0000256|RuleBase:RU368... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.