Resource Type:
Polypeptide
Name:
XM_017393798.1
Identifier:
XM_017393798.1-protein
Sequence:
MASSLNTTNIFTSPSFRNNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNN
NNNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAG
NFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDG
MVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIAR
LALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPS
GDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRF
SSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSP
VVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVV
VIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNL
EAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEK
YGGEPLFFPNPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIK
LPSRVPYGFHGTFISAKDLETQA
Sequence Length:
573
Sequence Checksum:
3a99c4cc69c2255d2a50b64314744e74
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393798.1, derives from mRNA, XM_017393798.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX0 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52078.1}))
HSP 1 Score: 1180.62 bits (3053), Expect = 0.000e+0
Identity = 565/573 (98.60%), Postives = 570/573 (99.48%), Query Frame = 0
Match: Q2VEX0 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52078.1}))
HSP 1 Score: 1180.62 bits (3053), Expect = 0.000e+0
Identity = 565/573 (98.60%), Postives = 570/573 (99.48%), Query Frame = 0
Query: 1 MASSLNTTNIFTSPSFRNNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFPNPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
MASSLNTTNIFTSPSFRNNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQ PLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGI+WV+VPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIR+PILSC DQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEK+GGEPLFFPNP+SKNEDDGYILAFVHDEKNWESELQIVNA TLELEASIKLPSRVPYGFHGTFISAKDLETQA
Sbjct: 1 MASSLNTTNIFTSPSFRNNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQLPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIRWVDVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRKPILSCYDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKFGGEPLFFPNPDSKNEDDGYILAFVHDEKNWESELQIVNAATLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 963.37 bits (2489), Expect = 0.000e+0
Identity = 454/560 (81.07%), Postives = 500/560 (89.29%), Query Frame = 0
Match: Q2VEW9 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52079.1}))
HSP 1 Score: 963.37 bits (2489), Expect = 0.000e+0
Identity = 454/560 (81.07%), Postives = 500/560 (89.29%), Query Frame = 0
Query: 21 KTNVHSSIQVPSIPFSPNKSSTTYQTPC------NNNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
K NV+ S+Q PSI P +S YQTPC + +S +WN LQKAA+MALDAVE+ I +RE +HPLPKT DP++QIAGNFAPVPEQPV+ L V+GKIPECI+GVYVRNGANPH EP AGHH FDGDGMVHAVQFK G+ASYACRFTETERL+QER+LG+P FPKAIGELHGHSGIARLALFYARG+FGL+DH G GVANAGLVYFN+RLLAMSEDDLPYHV + SGDL+T+GRYNFDGQLD+TMIAHPKIDP+T EL ALSYNVIQKPYLKYFR S DG KS+DVDI+L+DPTMMHDFAITENFVVIPDQQVVFK+SEMIQGGSPVVYDKNKVSRFGVLDKYA D SGIKWVEVPDCFCFHLWNAWE++E+DE+VVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKS R+PI+S +DQVNLEAGMVNKN LGRKTQFAYLAIAEPWPKVSGFAKVDL +GQV KFFYGD KYGGEPLF P NP S+NEDDGYILAFVHDEK W+SELQIVNA+TLELEA+++LPSRVPYGFHGTFISAKDLE+QA
Sbjct: 29 KNNVNCSLQSPSILHFPKQSPHIYQTPCVPTTIAQPKHQDSSSSNQWNFLQKAASMALDAVENVIAAREKEHPLPKTADPQVQIAGNFAPVPEQPVRHRLPVTGKIPECISGVYVRNGANPHLEPTAGHHFFDGDGMVHAVQFKEGAASYACRFTETERLIQERNLGKPVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVEITSSGDLKTVGRYNFDGQLDTTMIAHPKIDPDTKELIALSYNVIQKPYLKYFRVSPDGVKSDDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKNKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDEESDEIVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSTRKPIMSSEDQVNLEAGMVNKNKLGRKTQFAYLAIAEPWPKVSGFAKVDLFTGQVQKFFYGDHKYGGEPLFLPKNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVQLPSRVPYGFHGTFISAKDLESQA 588
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 945.651 bits (2443), Expect = 0.000e+0
Identity = 452/588 (76.87%), Postives = 507/588 (86.22%), Query Frame = 0
Match: Q2VEW8 ((Putative 9-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ABB52080.1}))
HSP 1 Score: 945.651 bits (2443), Expect = 0.000e+0
Identity = 452/588 (76.87%), Postives = 507/588 (86.22%), Query Frame = 0
Query: 1 MASSLNTTNIFTSPSFRNNT-----KTNVHSSIQV-PSIPFSPNKSSTTYQTPC--------NNNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
MA+S + + + P+ ++ KTNV+ +IQ PSI P +S YQTP + +++S PKWN LQKAA+MALDAVE+ IIS+E HPLPKT DP++QI+GNFAPV EQPV+ +L V+GKIPECI+GVYVRNGANPHFEP GHH FDGDGMVHAV+FK+G ASYACR+TETERL+QER+LGR FPKAIGELHGHSGIARLALFYARG+FGL+DH G GVANAGLVYFN+RLLAMSEDDLPYHV++ P GDL T+ RY+FDGQLDSTMIAHPKIDPET+EL AL+YNVIQKPYLKYFR S DG KS DVDI+L+DPTMMHDFAITENFVVIPDQQVVFK+SEMIQGGSPVVYDK KVSRFGVLDKYA D SGIKWVEVPDCFCFHLWNAWE+KE+DE+VVIGSCMTPADSIFNECDEGL+SVLSEIRLNLKTGKS RR I+S +DQVNLEAGMVN N LGRKTQFAYLAIAEPWPKVSGFAKVDL +G++ KFFYGD KYGGEPLF P NP S+NEDDGYILAFVHDEK W+SELQIVNA+TLELEA++KLPSRVPYGFHGTFIS KDLE QA
Sbjct: 1 MAASATSASTWAKPNIYSSQRDSPRKTNVNCAIQSSPSILHFPKQSKQKYQTPSIPTTIVQPKHQDSSSSATPKWNFLQKAASMALDAVENIIISQEQSHPLPKTADPQVQISGNFAPVQEQPVQHHLPVTGKIPECISGVYVRNGANPHFEPTGGHHFFDGDGMVHAVKFKDGEASYACRYTETERLIQERNLGRTVFPKAIGELHGHSGIARLALFYARGLFGLVDHSQGTGVANAGLVYFNNRLLAMSEDDLPYHVQITPKGDLRTVERYSFDGQLDSTMIAHPKIDPETNELIALTYNVIQKPYLKYFRVSPDGVKSSDVDIELADPTMMHDFAITENFVVIPDQQVVFKISEMIQGGSPVVYDKEKVSRFGVLDKYAKDGSGIKWVEVPDCFCFHLWNAWEDKESDEIVVIGSCMTPADSIFNECDEGLESVLSEIRLNLKTGKSTRRAIISPEDQVNLEAGMVNINKLGRKTQFAYLAIAEPWPKVSGFAKVDLFNGEIKKFFYGDNKYGGEPLFLPRNPNSENEDDGYILAFVHDEKAWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFISEKDLEKQA 588
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TP06 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|RefSeq:XP_011082846.1}))
HSP 1 Score: 924.08 bits (2387), Expect = 0.000e+0
Identity = 435/569 (76.45%), Postives = 495/569 (86.99%), Query Frame = 0
Match: A0A6I9TP06 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|RefSeq:XP_011082846.1}))
HSP 1 Score: 924.08 bits (2387), Expect = 0.000e+0
Identity = 435/569 (76.45%), Postives = 495/569 (86.99%), Query Frame = 0
Query: 18 NNTKTNVHSSIQVPSIPFSPNKSSTTYQTP------------CNNNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
++ KT+V S+Q P++ F TTYQTP + SP PKWN++QKAAAMALDAVE+A+ EL+HPLPKT DPE+QIAGNF+PVPEQPV+ L V GKIPE I GVYVRNGANP FEP+AGHH FDGDGM+HAV+F+NGSASYACRFTET+RLVQER+LGRP FPKAIGELHGHSGIARL LFYARG+F L+DH G GVANAGLVYFN+RLLAMSEDDLPYHVR+ P+GDL+T+ RYNF+GQL+STMIAHPK+DP + ELFALSY+VI+KPYLKYFRFS +G KSEDV+I +S+PTMMHDFAITE FV++PDQQVVFKMSEMI+GGSPVVY+K+KVSRFGVLDKYA D+SGIKWV+VPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS RRPI+S +DQVNLEAGMVN+N LGRKT++AYLAIAEPWPKVSGFAKVDL +G+V KF YGDEKYGGEPLF P +P S+ EDDGYILAFVHDEK W+SELQIVNA T++LEAS+KLPSRVPYGFHGTFISAKDL QA
Sbjct: 38 HSRKTDVKCSLQTPTLHFPKQSPPTTYQTPSPTKIVVNPQPTVRKGDAASPSKPKWNMIQKAAAMALDAVENALTDHELRHPLPKTADPEVQIAGNFSPVPEQPVRHRLPVVGKIPESIQGVYVRNGANPLFEPQAGHHFFDGDGMIHAVKFENGSASYACRFTETQRLVQERALGRPIFPKAIGELHGHSGIARLLLFYARGLFNLVDHGQGTGVANAGLVYFNNRLLAMSEDDLPYHVRLTPNGDLKTVERYNFNGQLNSTMIAHPKVDPVSGELFALSYDVIRKPYLKYFRFSRNGEKSEDVEIPVSEPTMMHDFAITEKFVIVPDQQVVFKMSEMIRGGSPVVYEKDKVSRFGVLDKYAKDSSGIKWVQVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRPIMSEEDQVNLEAGMVNRNRLGRKTRYAYLAIAEPWPKVSGFAKVDLFTGEVKKFIYGDEKYGGEPLFLPRDPNSEAEDDGYILAFVHDEKAWKSELQIVNAKTMKLEASVKLPSRVPYGFHGTFISAKDLANQA 606
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 919.842 bits (2376), Expect = 0.000e+0
Identity = 441/590 (74.75%), Postives = 494/590 (83.73%), Query Frame = 0
Match: A0A0A7DW45 ((9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|EMBL:AIX87507.1}))
HSP 1 Score: 919.842 bits (2376), Expect = 0.000e+0
Identity = 441/590 (74.75%), Postives = 494/590 (83.73%), Query Frame = 0
Query: 1 MASSLNTTNIFTSPSFRNNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNNNNNSPPIPK---------------WNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSC-DDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
M SS + S S N + S+Q P I P + S+ YQTP N S P K WN++QKAAAMALDAVES + EL+HPLPKT DP +QI+GNFAPVPE PV Q+L V+GKIP+C+NGVYVRNGANP FEP AGHH FDGDGMVHAV+FKNGSASYACRFTETERLVQE++LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH +G GVANAGLVYFN+RLLAMSEDDLPYHVRV +GDLET GR++FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS DV+I + DPTMMHDFAITE FVVIPDQQVVFKMSEMI+GGSPVVYDKNKVSRFG+LDKYA D SG+KWVEVPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS R+ I+ ++QVNLEAGMVN+N LGRKTQ+AYLAIAEPWPKVSGFAKVDL +G++NKFFYGD KYGGEPLF P +P SK+EDDGYILAFVHDEK W+SELQIVNA+TL+LEA++KLPSRVPYGFHGTFI+AKDL QA
Sbjct: 18 MPSSREFGHSSNSISLLKNKPNKITCSLQAPPILHFPKQQSSNYQTPKTNTIPTSKPTTKISHPKQENKSSSSSPWNLVQKAAAMALDAVESVLTKHELEHPLPKTADPRVQISGNFAPVPENPVTQSLPVTGKIPKCVNGVYVRNGANPLFEPTAGHHFFDGDGMVHAVEFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGVFGLVDHSNGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTANGDLETDGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSGLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLESVLSEIRLNLKTGKSTRKAIIQNEEEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEINKFFYGDNKYGGEPLFLPRDPNSKDEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINAKDLANQA 607
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UAY0 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|RefSeq:XP_011098124.1}))
HSP 1 Score: 918.687 bits (2373), Expect = 0.000e+0
Identity = 429/569 (75.40%), Postives = 491/569 (86.29%), Query Frame = 0
Match: A0A6I9UAY0 ((9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic {ECO:0000313|RefSeq:XP_011098124.1}))
HSP 1 Score: 918.687 bits (2373), Expect = 0.000e+0
Identity = 429/569 (75.40%), Postives = 491/569 (86.29%), Query Frame = 0
Query: 18 NNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCN------------NNNNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
N + S+Q P++ F ++TTYQTP + +N+ SP P+WNI+QKAAAMAL+A+E+A+ + EL HPLPKT DP +QIAGNF+PVPEQPVK L V+GKIP+ I GVYVRNGANP FEP AGHH FDGDGM+HAVQFK+GSASYACRFTET+RL+QER+LGRP FPKAIGELHGHSGIARL LFYARG+F L+DH G GVANAGLVYFN+RLLAMSEDDLPYHVRV P+GDL+T+ RYNF+GQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS D++I +S PTMMHDFAIT+ FV++PDQQVVFKMSEMI+GGSPVVYDKNK+SRFGVLDKYA DA+ +KWVEVPDCFCFHLWNAWEE ETDE+VV+GSCMTP DSIFNECDEGL+S+LSEIRLNLKTGKS RRPI+S +DQVNLEAGMVN+N LGRKT++AYLAIAEPWPKVSGFAKVDL +G+VNKFFYG+EKYGGEPLF P +P S EDDGYILAFVHDEK W+SELQIVNA T+ LEAS+KLPSRVPYGFHGTFISAKDL QA
Sbjct: 37 NKLPPTIKCSLQAPTLHFPKQSTTTTYQTPSSTTIAAPQTSITKSNSPASPSKPQWNIIQKAAAMALEAIETALTAHELDHPLPKTADPRVQIAGNFSPVPEQPVKHKLPVTGKIPDSIQGVYVRNGANPLFEPVAGHHFFDGDGMIHAVQFKDGSASYACRFTETQRLIQERALGRPIFPKAIGELHGHSGIARLLLFYARGLFKLVDHGQGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPNGDLKTVERYNFNGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSRNGEKSADIEIPVSGPTMMHDFAITKKFVIVPDQQVVFKMSEMIRGGSPVVYDKNKLSRFGVLDKYAEDATKMKWVEVPDCFCFHLWNAWEEPETDEIVVVGSCMTPPDSIFNECDEGLKSILSEIRLNLKTGKSTRRPIMSDEDQVNLEAGMVNRNWLGRKTRYAYLAIAEPWPKVSGFAKVDLFTGEVNKFFYGEEKYGGEPLFLPTDPNSGAEDDGYILAFVHDEKAWKSELQIVNAKTMSLEASVKLPSRVPYGFHGTFISAKDLANQA 605
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q6DLW4 ((9-cis-epoxy-carotenoid dioxygenase 1 {ECO:0000313|EMBL:AAT75151.1}))
HSP 1 Score: 918.687 bits (2373), Expect = 0.000e+0
Identity = 437/565 (77.35%), Postives = 488/565 (86.37%), Query Frame = 0
Match: Q6DLW4 ((9-cis-epoxy-carotenoid dioxygenase 1 {ECO:0000313|EMBL:AAT75151.1}))
HSP 1 Score: 918.687 bits (2373), Expect = 0.000e+0
Identity = 437/565 (77.35%), Postives = 488/565 (86.37%), Query Frame = 0
Query: 18 NNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNN-------NNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPIL-SCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
N N++SS+Q P I P K S+ YQTP + NNNS I KWN++QKAAAMALDAVE A+ EL+HPLPKT DP +QI+GNFAPVPE PV Q+L V+GKIP+C+ GVYVRNGANP FEP AGHH FDGDGMVHAVQFKNGSASYACRFTETERLVQE++LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH G GVANAGLVYFN+RLLAMSEDDLPYHV+V P+GDL+T GR++FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS DV+I + DPTMMHDFAITE FV+IPDQQVVFKMSEMI+GGSPVVYDKNKVSRFG+LDKYA D S +KWVEVPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS R+ I+ + D+QVNLEAGMVN+N LGRKTQ+AYLAIAEPWPKVSGFAKVDL +G+V KF YGD KYGGEPLF P +P SK EDDGYILAFVHDEK W SELQIVNA+TL+LEA++KLPSRVPYGFHGTFI+A DL QA
Sbjct: 40 NRKSLNINSSLQAPPILHFP-KQSSNYQTPKTSTISHPIQENNNSSSISKWNLVQKAAAMALDAVEGALTKHELEHPLPKTADPRVQISGNFAPVPENPVCQSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLIDHSRGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSDLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKAIIENPDEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKYGGEPLFLPRDPNSKEEDDGYILAFVHDEKEWNSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINANDLANQA 603
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A272 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524088.1}))
HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 433/567 (76.37%), Postives = 488/567 (86.07%), Query Frame = 0
Match: A0A5J5A272 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524088.1}))
HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 433/567 (76.37%), Postives = 488/567 (86.07%), Query Frame = 0
Query: 18 NNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNNNN-----------NSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFPN-PESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQ 572
N + +++ S+Q PSI P K ++ YQTP N + P+WN LQ+AAAMALDAVESA+++RE PLPKT DP +QIAGNFAPVPEQPV+ +L ++GK+P+CI GVY+RNGANP FEP AGHH FDGDGMVHAVQFK+GSASYACRFTET+RLVQER+LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH HG GVANAGLVYFN RLLAMSEDDLPYHVRV PSGDL+T+GRY+F+GQL STMIAHPK+DP + EL ALSY+VIQKPYLKYF+FS DG+KS DV+I +S+PTMMHDFAITE FVVIPDQQVVFK+ EMI GGSPVVYDKNK+SRFG+LDK ASDAS IKWVE PDCFCFHLWNAWEE ETDEVVVIGSCMTPADSIFNECDEGL+SVLSEIRLNLK+GKS RRPIL DQVNLEAGMVN+N LGRK+QFAYLAIAEPWPKVSGFAKVDLS+G+V K+ YGD++YGGEPLF P P S+ EDDGY+LAFVHDEK W+SEL IVNAVTL+LEAS+KLPSRVPYGFHGTFISAKDL Q
Sbjct: 38 NRQQHHINCSLQTPSILHVP-KQTSIYQTPIYPKENFSASSPSADDSTATSSPQWNFLQRAAAMALDAVESALVTRERDLPLPKTADPSVQIAGNFAPVPEQPVRHSLPITGKLPKCIQGVYIRNGANPLFEPVAGHHFFDGDGMVHAVQFKDGSASYACRFTETQRLVQERALGRPVFPKAIGELHGHSGIARLLLFYARGLFGLVDHTHGTGVANAGLVYFNKRLLAMSEDDLPYHVRVTPSGDLKTVGRYDFNGQLHSTMIAHPKLDPASGELLALSYDVIQKPYLKYFKFSPDGTKSPDVEIPVSEPTMMHDFAITERFVVIPDQQVVFKLQEMISGGSPVVYDKNKMSRFGILDKNASDASEIKWVEAPDCFCFHLWNAWEEPETDEVVVIGSCMTPADSIFNECDEGLKSVLSEIRLNLKSGKSTRRPILRESDQVNLEAGMVNRNKLGRKSQFAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGDQRYGGEPLFLPREPNSEAEDDGYVLAFVHDEKTWKSELHIVNAVTLQLEASVKLPSRVPYGFHGTFISAKDLAKQ 603
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5H2NAE4 ((9-cis-epoxycarotenoid dioxygenase 3 {ECO:0000313|EMBL:AWU22291.1}))
HSP 1 Score: 916.761 bits (2368), Expect = 0.000e+0
Identity = 431/576 (74.83%), Postives = 495/576 (85.94%), Query Frame = 0
Match: A0A5H2NAE4 ((9-cis-epoxycarotenoid dioxygenase 3 {ECO:0000313|EMBL:AWU22291.1}))
HSP 1 Score: 916.761 bits (2368), Expect = 0.000e+0
Identity = 431/576 (74.83%), Postives = 495/576 (85.94%), Query Frame = 0
Query: 3 SSLNTTNIFTSPSFRNNTKTNVHS---SIQVPSIPFSPNKSSTTYQTPCNNNNNNSPPI--PKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPILSCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQ 572
SSL NI+++ + H+ S+Q P++ F + QT ++PP P+WNI+QKAAAMAL+AVE A+ + ELQHPLPKT DP +QIAGNF+PVPEQPVK NL V GKIP+ I+GVYVRNGANP FEP AGHH FDGDGM+H+VQFK G+ASYACRFTET+RL+QERS+GRP FPKAIGELHGHSGIARL LFYARG+F L+DH HG GVANAGLVYFN+RLLAMSEDDLPYHVRV P+GDL+T+GRY+FDGQLD+TMIAHPK+DP T E+FALSY+VIQKPYLKYF F +G KSEDV+I L++PTMMHDFAITE FV+IPDQQVVFKMSEMI+GGSPVVYD++K SRFGVLDKYA DAS +KWV+VPDCFCFHLWNAWEE ETDEVVVIGSCMTP DSIFNECD+GL+SVLSEIRLNL+TGKS RRPI+S DQVNLEAGMVN+N LGRKT++AYLAIAEPWPKVSGFAKVDL +GQV KFFYGDEKYGGEPLF P + S+ EDDGYILAFVHDEKNW+SELQIVNA+T++LEA++KLPSRVPYGFHGTFI+AKDL Q
Sbjct: 4 SSLANPNIYSASRGDRTNSFSFHTIKCSLQTPALQFPKQSTVAAPQT------KSTPPSSKPQWNIIQKAAAMALEAVEGALTAHELQHPLPKTADPRVQIAGNFSPVPEQPVKHNLPVVGKIPDAISGVYVRNGANPLFEPVAGHHFFDGDGMIHSVQFKKGTASYACRFTETQRLIQERSIGRPIFPKAIGELHGHSGIARLLLFYARGLFNLVDHAHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPAGDLKTVGRYSFDGQLDATMIAHPKLDPATGEMFALSYDVIQKPYLKYFHFQQNGEKSEDVEIPLAEPTMMHDFAITEKFVIIPDQQVVFKMSEMIRGGSPVVYDRSKTSRFGVLDKYAKDASAMKWVDVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNECDQGLKSVLSEIRLNLRTGKSTRRPIMSEADQVNLEAGMVNRNKLGRKTRYAYLAIAEPWPKVSGFAKVDLFTGQVEKFFYGDEKYGGEPLFLPRDAASEEEDDGYILAFVHDEKNWKSELQIVNAMTMKLEATVKLPSRVPYGFHGTFITAKDLAEQ 573
BLAST of XM_017393798.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IMN0 ((Putative 9-cis-epoxy-carotenoid dioxygenase 1-like {ECO:0000313|EMBL:JAP33610.1}))
HSP 1 Score: 915.605 bits (2365), Expect = 0.000e+0
Identity = 435/565 (76.99%), Postives = 488/565 (86.37%), Query Frame = 0
Match: A0A0V0IMN0 ((Putative 9-cis-epoxy-carotenoid dioxygenase 1-like {ECO:0000313|EMBL:JAP33610.1}))
HSP 1 Score: 915.605 bits (2365), Expect = 0.000e+0
Identity = 435/565 (76.99%), Postives = 488/565 (86.37%), Query Frame = 0
Query: 18 NNTKTNVHSSIQVPSIPFSPNKSSTTYQTPCNNN-------NNNSPPIPKWNILQKAAAMALDAVESAIISRELQHPLPKTTDPEIQIAGNFAPVPEQPVKQNLSVSGKIPECINGVYVRNGANPHFEPKAGHHLFDGDGMVHAVQFKNGSASYACRFTETERLVQERSLGRPAFPKAIGELHGHSGIARLALFYARGMFGLLDHKHGMGVANAGLVYFNDRLLAMSEDDLPYHVRVGPSGDLETIGRYNFDGQLDSTMIAHPKIDPETSELFALSYNVIQKPYLKYFRFSSDGSKSEDVDIQLSDPTMMHDFAITENFVVIPDQQVVFKMSEMIQGGSPVVYDKNKVSRFGVLDKYASDASGIKWVEVPDCFCFHLWNAWEEKETDEVVVIGSCMTPADSIFNECDEGLQSVLSEIRLNLKTGKSIRRPIL-SCDDQVNLEAGMVNKNMLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGQVNKFFYGDEKYGGEPLFFP-NPESKNEDDGYILAFVHDEKNWESELQIVNAVTLELEASIKLPSRVPYGFHGTFISAKDLETQA 573
N N++SS+Q P I P K S+ YQTP + NN+S I KWN++QKAAAMALDAVE A+ EL+HPLPKT DP +QI+GNFAPVPE PV Q+L V+GKIP+C+ GVYVRNGANP FEP AGHH FDGDGMVHAVQFKNGSASYACRFTETER VQE++LGRP FPKAIGELHGHSGIARL LFYARG+FGL+DH G GVANAGLVYFN+RLLAMSEDDLPYHV+V P+GDL+T GR++FDGQL STMIAHPK+DP + ELFALSY+VIQKPYLKYFRFS +G KS DV+I + DPTMMHDFAITE FV+IPDQQVVFKMSEMI+GGSPVVYDKNKVSRFG+LDKYA D S +KWVEVPDCFCFHLWNAWEE ETDE+VVIGSCMTP DSIFNECDEGL+SVLSEIRLNLKTGKS R+ I+ + D+QVNLEAGMVN+N LGRKTQ+AYLAIAEPWPKVSGFAKVDL +G+V KF YGD KYGGEPLF P +P SK EDDGYILAFVHDEK W+SELQIVNA+TL+LEA++KLPSRVPYGFHGTFI+A DL QA
Sbjct: 40 NRQSLNINSSLQAPPILHFP-KQSSNYQTPKTSTISHPKQENNSSSSISKWNLVQKAAAMALDAVEGALTKHELEHPLPKTADPRVQISGNFAPVPENPVCQSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERFVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLIDHSRGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITEKFVIIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSDLKWVEVPDCFCFHLWNAWEEPETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKAIIENPDEQVNLEAGMVNRNKLGRKTQYAYLAIAEPWPKVSGFAKVDLFTGEVEKFIYGDNKYGGEPLFLPRDPNSKEEDDGYILAFVHDEKEWKSELQIVNAMTLKLEATVKLPSRVPYGFHGTFINANDLANQA 603
| Match Name | Stats | Description |
|---|---|---|
| Q2VEX0 | E-Value: 0.000e+0, PID: 98.60 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| Q2VEW9 | E-Value: 0.000e+0, PID: 81.07 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| Q2VEW8 | E-Value: 0.000e+0, PID: 76.87 | (Putative 9-cis epoxycarotenoid dioxygenase {ECO:0... [more] |
| A0A6I9TP06 | E-Value: 0.000e+0, PID: 76.45 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| A0A0A7DW45 | E-Value: 0.000e+0, PID: 74.75 | (9-cis-epoxycarotenoid dioxygenase 1 {ECO:0000313|... [more] |
| A0A6I9UAY0 | E-Value: 0.000e+0, PID: 75.40 | (9-cis-epoxycarotenoid dioxygenase NCED1, chloropl... [more] |
| Q6DLW4 | E-Value: 0.000e+0, PID: 77.35 | (9-cis-epoxy-carotenoid dioxygenase 1 {ECO:0000313... [more] |
| A0A5J5A272 | E-Value: 0.000e+0, PID: 76.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| A0A5H2NAE4 | E-Value: 0.000e+0, PID: 74.83 | (9-cis-epoxycarotenoid dioxygenase 3 {ECO:0000313|... [more] |
| A0A0V0IMN0 | E-Value: 0.000e+0, PID: 76.99 | (Putative 9-cis-epoxy-carotenoid dioxygenase 1-lik... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |