XM_017402539.1

Resource Type: 
Polypeptide
Name: 
XM_017402539.1
Identifier: 
XM_017402539.1-protein
Sequence: 
MSNNLVSQQLSMSNADMSQMEPTYVKVDSSVNMQMGVMGSIPDVYASHQF
AMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKSKPDQKD
VQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSL
STSHELPNHSGTNRKGGTLQSVSAVSGSQTPASNRRTVKNDLNSNKPASQ
RVQTPKGRTAQIGTPRQTESFEAVRSKMRESLASALALVNQNQSSSPKQE
KSPLHKDDNNPEVISQNVKLSESTSVPVDAAVAHENIKDDIQTKDISLVN
NPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFF
AKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNL
TLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKK
YKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEW
RTAKAEELAQMIVLPEDGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGA
TTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPA
DGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKT
PLDKLSAETGENSESSKLASKDVDNRTGKATDLDSKMTKQDAEEKSGDYA
KEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSS
LEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAI
DSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDN
GLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNFRRQEKNNNVNANMTP
RTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSN
PTQSSRLSSNPSRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAW
DDDDDDDIPEWRPDAPLTHVQTRPPARGFHQAVQPPLVNQTATTQHVLSP
QVAMPPMTMIQNNPSSWQQGNGRWVAQPPGFQQSSLASQPNIGQFQGGPV
AQAGQPPPGNWRRDAPRSRGF
Sequence Length: 
1121
Sequence Checksum: 
c0cbe4d8d5616610f5770c60ee024e04
View location in JBrowse: 
DCARv2_Chr6:155399..160552-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017402539.1, derives from mRNA, XM_017402539.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E043 (TFIIS central domain-containing protein {ECO:0000259|PROSITE:PS51321})

HSP 1 Score: 925.62 bits (2391), Expect = 0.000e+0
Identity = 553/1141 (48.47%), Postives = 722/1141 (63.28%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKS-KPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQT-PASNRRTVKNDLNSNKPASQRVQTPKGRTAQI--GTPRQTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAA-VAHENIKDDIQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPLDKLSAETGENSESSKLASKD-VDNRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNF--RRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPTQSSRLSS---NPSRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLTHVQT---RPPARGFHQAVQPPLVNQTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPPGF---QQSSLASQPNIGQFQGGPVAQAGQPPPGNWRRD-APRSRGF 1121
            MSNNLVSQ LS+ N    QM P   ++++S+ N+QMG+ G + +      F +S + M L++      G Q+  + N  +G+ME  V   GL +  +P+Q+   ++AM +N G QK+  P+KR A  EP+  ++V +QL MPNK    M++ + +  +      N+K   + S  +   SQ  PAS ++ V+N+  S +  +++ QTPK RT Q+       TESFE+VRSKMRESLASALALV Q Q  +  +E       ++  + + Q  +  ESTS+  DAA    EN  D +  K+       +   S       +E +     TWK D      N VL  EDV+F DSFF KDELLQG+GL+W  ++ ++V   +++Q +++  +                    EKV       G  R+E    +++P+ +A  IE ELFKLFGGVNKKYKE+GRSL+FNLKDRNNPELRE+VMSG++ PE+LCSMTAEELASKELS+WR AKAEE AQM+VLP+ D D RRLV+KTHKGE+QVEVEQDD +SVEVSVG + L + +  +++     S++ DE+KD   VE EK S E  D S SLTIP DGTDL+QGL+ DEFKDAEFLPPIVSLDEFMESL+SEPPF+NL  D    +P DK         ESS   SKD V   T K+  ++ K T  D + KS + + E K   PD  S  E VWEG LQL ISA +TV+G ++SGEKTSTKEWPSSLEIKGRVRLDAFEKF+Q+LPMSRSRAVMV+HFVLK  SS +DR +L E +DSYV DERLGFAEPA G+ELYLCPPH KI+E+L KHLSK  T+ +NS ++GLIG++VWRK HLSS ISPNS++HHKHSSK+Q     R  EK+  +NAN   +  +P           P G+DDDDIPPGFGP  ARD+DDLPEF+FSG +NP+     +S   +P RPVDQ+R LI KYG+P+ +  ++N       G+  Q W ++DDDDIPEW+P  PLT       +PP   F    QPP++ Q A  QH         P+ M+Q    +  QG+G W  QPPG+   Q S++ +QP+ GQ  G PV  AGQ P    RRD APRSRGF
Sbjct:    1 MSNNLVSQPLSVPN---KQMNPISNELEASIPNIQMGMTGGMSNSPRLQHFEISKKHMGLMESAPNNLGLQNPLVLNKQMGSMEQQVSGPGLQEFLRPNQQVGDVEAMLSNMGSQKILLPSKRSAVGEPIVRNSVAQQL-MPNKNVARMEAFTNTTGMQQLPSPNKKTIQVHSNFSTPASQNLPASTKKMVRNESISGRSGTKQSQTPKNRTTQMEPSAKVHTESFESVRSKMRESLASALALVTQQQDKTSNEE------SNSGNQQMQQGPQRIESTSMLADAADHESENPPDSLPLKESCSAGRANKGHSASQAIFVNESMVESAQTWKGDGHLIQCNTVLANEDVSFGDSFFVKDELLQGNGLAWALDVDVDVGELKEIQIAKKPKL------------------ENEKV-------GGVREEQ--AVQSPKSMALRIEVELFKLFGGVNKKYKERGRSLLFNLKDRNNPELRERVMSGELPPERLCSMTAEELASKELSQWRIAKAEEFAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEQDDGVSVEVSVGTSALTRLESKNRDMEDHHSANADEIKDRDNVEGEKSSSENQDLSCSLTIPNDGTDLLQGLMVDEFKDAEFLPPIVSLDEFMESLDSEPPFENLPMDGGKISPSDK---------ESSDQGSKDPVGATTEKSDKVEVKFTDSDVKTKSKESSTEPKSSPPDAASKCEHVWEGELQLTISAAVTVVGFFKSGEKTSTKEWPSSLEIKGRVRLDAFEKFIQDLPMSRSRAVMVVHFVLKDGSSENDRVNLSEVVDSYVSDERLGFAEPAPGVELYLCPPHTKIVEMLSKHLSKGHTDTLNSIESGLIGIIVWRKPHLSSAISPNSSAHHKHSSKRQHFTPRRHHEKDPIMNANFASKQTLP-----------PMGDDDDDIPPGFGPAAARDEDDLPEFNFSGPTNPSVPKHFNSTNMSPCRPVDQVRALIHKYGQPSSNVISRN------VGIRTQPW-NNDDDDIPEWQPQ-PLTQHHLPPQQPPVLNF----QPPVLPQ-AVNQH---------PVNMVQGMFVAPPQGDGMW-QQPPGYSGLQPSNIGTQPSGGQHYGVPV--AGQLPGIGRRRDAAPRSRGF 1059
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BQR9 (TFIIS central domain-containing protein {ECO:0000259|PROSITE:PS51321})

HSP 1 Score: 915.605 bits (2365), Expect = 0.000e+0
Identity = 592/1171 (50.56%), Postives = 761/1171 (64.99%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKS-KPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQ-TPASNRRTVKNDLNSNKPASQRVQTPKGRTAQIG-TPR-QTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKL----SESTSVPVDAAVA-HENIKDDIQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKL--PPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPL-DKLSAETGENSESSKLASKD-VD------NRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDM-TSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQ--NFRRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPT------QSSRLS------SNPSRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQ-AWD---DDDDDDIPEWRPDAPLTHVQTRPPAR-GFHQAVQPPLVNQTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPP---GFQQSSLASQPNIGQFQGGPVAQAGQPPPG------NWRRDAPRSRGF 1121
            MSNNLVS+QLS+SN +M Q+EP   K+DSS+ NM+MG++G + +  AS QF MSD QM LV+ +S   G Q+  + N  +  ME    N+G H+  KP Q+  +++AM  N G QKL  P+ ++   EPM N +VP+Q S+ NKR T M+    +  L   S  ++K   +Q +S  SG Q +PASN+R V+N+  SNK  SQ+ QTPK RTA++  +P+ QTESFE+VRSKMRESLA+ALA  +Q Q  +  +EK    K  +   + SQ  +     +E TS P DAA    EN  D + +K+    + P+   ST  E  + E + +   +WK    D  YN VLP+EDV+F+D+FF KDELLQG+GL+W  ++ ++V   +++Q+S++         +K++H D                   GRDE    +++P+ LAF+IEAELFKLFGGVNKKYKEKGRSL+FNLKDRNNPEL EKVMSG+I+PE+LCSMTAEELASKELSEWR AKAEELAQM+VLP+ D D RRLV+KTHKGE+QVEVEQDD +SVEVSVG ++L Q Q  +KE    PPS SD            EK S+E  D S SLTIP+DGTDLMQGLI DE KDAEFLPPIVSLDEFMESL+SEPPF+NL  +T    P  ++ S+++     SS L SKD VD      ++  +A  ++ K T+ D + KS     E K ++P +  S  ERVWEG LQL+IS+ +TV+G +RSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMV+ FVL+  S  +++ASL E ++SYV+DER+GFAEPA G+ELY CP H KILE L KHL KD T+++ STDNGLIGVVVWRK HLSST+SPNS+SHHKHSSK +   + R+QE++ NVN N   R  + S   P      P  +DD     GFGPG ARD+DDLPEFSFSG SNP+      Q S ++        PSRPVD +REL+ KYG+     ++ NWQ KR  G   Q  W+   DDDDDD+PEW+P AP          R  F Q + P + N+   +   +  Q+A  P+ +    P   +Q  G W  QPP   G Q S+L SQP  GQ+ G P      PPPG      +WR+DAPRSRGF
Sbjct:    1 MSNNLVSRQLSISNKEMGQLEPISNKLDSSISNMRMGMIGPMSNNAASQQFVMSDNQMGLVESMSNNIGSQTLPVLNKPIAQMEPNGSNLGSHQFLKPIQQVGEVEAMLNNLGSQKLLSPSNQR---EPMSNHSVPQQFSIGNKRTTQMEHFLNTPGLQQLSVPHKKTAQMQFMSRTSGLQNSPASNKRMVRNESISNKSGSQQPQTPKNRTARLEPSPKGQTESFESVRSKMRESLAAALAFASQLQDKAANEEK----KSQSEAAITSQQTREDSQPAEFTSTPADAADHDSENPVDTLPSKESCSADRPNDGRSTSQETFSKE-MGDSTQSWKCAGQDFQYNNVLPDEDVSFSDNFFVKDELLQGNGLTWALDLDVKVGETKEVQTSKK---------RKLEHED------------------TGRDEGEQPVQSPQSLAFKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELIEKVMSGEISPERLCSMTAEELASKELSEWRMAKAEELAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEQDDGVSVEVSVGTSSLSQIQLKNKETETPPPSKSDG----------GEKSSLENQDISCSLTIPSDGTDLMQGLIVDELKDAEFLPPIVSLDEFMESLDSEPPFENLPVETGKTIPQSNRESSDSDNKLVSSDLPSKDPVDTNPDRADKKNRADKMEVKYTELDMKVKSSGSPVEPK-ISPTVGASKVERVWEGELQLNISSTVTVVGCFRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVVQFVLEEGSPENEQASLSEVVESYVVDERVGFAEPAPGVELYFCPLHTKILETLSKHLPKDHTKMLKSTDNGLIGVVVWRKVHLSSTVSPNSSSHHKHSSKNKHFTSRRQQERDTNVNVNFASRPHISSMGVPQTHPEPPPDDDDIPP--GFGPGAARDEDDLPEFSFSGRSNPSVTQNHLQGSGMTPFHSHPQTPSRPVDHMRELVHKYGQTGTGAASGNWQAKRGVGAGSQPPWNDDDDDDDDDMPEWQPIAPQQQQLPPQLPRHSFQQPMMPHVANRHLGS--AMPVQLAPAPVAV----PMQQRQMQGAWWPQPPGPQGLQHSNLGSQPGGGQYYGVPAP----PPPGRQLGGLDWRQDAPRSRGF 1113
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QZJ2 ((PHD finger protein {ECO:0000313|EMBL:PSS17793.1}))

HSP 1 Score: 915.22 bits (2364), Expect = 0.000e+0
Identity = 546/1141 (47.85%), Postives = 718/1141 (62.93%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKS-KPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQT-PASNRRTVKNDLNSNKPASQRVQTPKGRTAQI--GTPRQTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAA-VAHENIKDDIQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPLDKLSAETGENSESSKLASKD-VDNRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNF--RRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPTQSSRLSS---NPSRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLT--HVQTR-PPARGFHQAVQPPLVNQTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPPGF---QQSSLASQPNIGQFQGGPVAQAGQPPPGNWRRD-APRSRGF 1121
            MSNNLVSQ LS+ N    QM P   ++++S+ NMQMG+ G + +      F +S +QM L++      G Q+  + N  +G+ME  V   GL +  +P+Q+   ++AM +N G QK+  P+KR A  EP+  ++V + L MPNK    M++ + +  +      N+K   + S  +   SQ  PAS ++ V+N+  S +  +++ QTPK RT Q+      QTESFE+VRSKMRESLASALALV + Q  +  +E       ++  + + Q  +  ESTS+  DAA    EN  D +  K+       +    T      +E +     TWK D      N VLP EDV+F DSFF KDELLQG+GL+W  ++ ++V   + +Q  ++  +  ++                          G  R++    +++P+ +A  IE ELFKLFGGVNKKYKE+GRSL+FNLKDRNNPELRE+VMSG++ PE+LCSMTAEELASKELS+WR AKAEE AQM+VLP+ D D RRLV+KTHKGE+QVEVEQDD +SVEVSVG + L + +  + +     S++ DE+KD   V  EK S E  D S SLTIP DGTDL+QGL+ DEFKDAEFLPPIVSLDEFMESL+SEPPF+NL  D    +P DK         ESS   SKD V    GK+  +++K T  D + KS + + E K   PD  S  E VWEG LQL ISA +TV+G ++SGEKTSTKEWPSSLEIKGRVRLDAFEKF+Q+LPMSRSRAVMV+HFVLK  SS +DR +L E +DSYV DERLGFAEPA G+ELYLCPPH KI+E+L KHLSK  T+ +NS D+GLIG++VWRK HLSS ISPNS++HHKHSSK+Q     R  EK+  +NAN   +  +P           P G+DDDDIPPGFGP  ARD+DDLPEF+FSG +NP+     +S   +P RPVDQ+RELI KYG+P+ +  ++N       G+  Q W ++DDDDIPEW+P  PLT  H+ ++ PP   F    QPP++ Q A  QH         P+ M+Q    +  QG+  W  QPPG+   Q S++ +QP+ GQ  G            + RRD APRSRGF
Sbjct:    1 MSNNLVSQPLSVPN---KQMNPISNELEASIPNMQMGMTGGMSNSPRLQHFEISKKQMGLMESAPNNLGLQNPLVLNKQMGSMEQQVSGPGLQEFLRPNQQVGDVEAMLSNMGSQKILLPSKRSAVGEPIVRNSVAQHL-MPNKNVARMEAFTNTTGMQQLPSPNKKTIQVHSNFSTPASQNLPASTKKMVRNESISGRSGTKQSQTPKNRTTQMEPSAKVQTESFESVRSKMRESLASALALVTRQQDKTSNEE------SNSGNQQMQQGPQRIESTSMLADAADHESENTTDSLPLKESCSAGRANKGHGTSQAIFVNESMVESAQTWKGDGHLFQCNTVLPNEDVSFGDSFFVKDELLQGNGLAWALDVDVDVGELKAIQIGKKPKLENEN-------------------------VGGVREQQ--AVQSPKSMALRIEVELFKLFGGVNKKYKERGRSLLFNLKDRNNPELRERVMSGELPPERLCSMTAEELASKELSQWRIAKAEEFAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEQDDGVSVEVSVGTSALTRLESKNGDMEAHHSANADEIKDRDNVVGEKSSSENRDLSCSLTIPNDGTDLLQGLMVDEFKDAEFLPPIVSLDEFMESLDSEPPFENLPMDGGKISPSDK---------ESSDQGSKDPVGATPGKSDKVEAKFTDSDVKTKSKESSTEPKSSPPDAASKCEHVWEGELQLTISAAVTVVGFFKSGEKTSTKEWPSSLEIKGRVRLDAFEKFIQDLPMSRSRAVMVVHFVLKDGSSENDRVNLSEVVDSYVSDERLGFAEPAPGVELYLCPPHTKIVEMLSKHLSKGHTDTLNSIDSGLIGIIVWRKPHLSSAISPNSSAHHKHSSKRQHFTPRRHHEKDPIMNANFASKQTLP-----------PMGDDDDDIPPGFGPAAARDEDDLPEFNFSGPTNPSLPKHFNSTNMSPCRPVDQVRELIHKYGQPSGNVVSRN------VGIRTQPW-NNDDDDIPEWQPQ-PLTQHHLPSQPPPVLNF----QPPVLPQ-AVNQH---------PVNMVQGMFVAPPQGDVMW-QQPPGYSGLQPSNIGTQPSSGQHYG-----------VHRRRDAAPRSRGF 1050
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PIV3 ((PHD finger protein {ECO:0000313|EMBL:PSR91807.1}))

HSP 1 Score: 889.412 bits (2297), Expect = 0.000e+0
Identity = 541/1141 (47.41%), Postives = 720/1141 (63.10%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKS-KPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQT-PASNRRTVKNDLNSNKPASQRVQTPKGRTAQI--GTPRQTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAA-VAHENIKDDIQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADT-QTKTPLDKLSAETGENSESSKLASKDVDNRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNFRRQ--EKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPTQSSRLSSN---PSRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLT--HVQTR-PPARGFHQAVQPPLVNQTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPPGF---QQSSLASQPNIGQFQGGPVAQAGQPPPGNWRRD-APRSRGF 1121
            MS+NL+SQ LS+      QM P   ++ SS+ N+QMG+ G + +      F +S +QM L++      G Q+ ++ N  +G+ME  V+  GL +  +P+Q+   M+AM +N G QK+  P+KR A  EP+  ++V +QL M NK    +++ + +  +      N+K   + S  +   SQ  PAS ++ V+N+  S +  +++ QTPK RT Q+      QTESFE+VRSKMRESLASALALV Q Q  +  +E       ++  + + Q  + +ESTS+P D A    EN  D + +K+       +   S       +E +     TWK D      N V+P EDV+F D+FF KDELLQG+GL+W  ++ ++V   +++Q +++  +           ++N+    EE+  Q                 +P+ +A  IE ELFKLFG VNKKYKE+GRSL+FNLKDRNNPELRE+V+SG++ PE+LCSMTAEELASKELS+WR AKAEELAQM+VLP+ D D RRLV+KTHKGE+QVEVEQDD +SVEVSVG + L + +  +K+     SS  D       V  EK S    D S SLTIP DGTDL+QGL+ DEFKDAEFLPPIVSLDEFMESL+SEPPF+NL  D  +  +P DK  ++ G          +  D    K TD D KM       KS + +KE K   PD  S  +RVW+G LQL ISA++TV+G ++SGEKTSTKEWPSSLEIKGRVRLDAFEKF+Q+LPMSRSRAVMV+HFVLK  SS DDRA+L EA  SYVLDERLGFAEPA G+ELYLCPPH KI+E+L KHLSKD  + +NS D+GLIG++VWRK HLSS ISPNS++H++HSSK+Q    R+  EK+  +NAN   +  VP           P+G+DD+DIPPGFGP  ARD+DDLPEF+FSG ++P+     +S    P RPVDQ+RELI KYG+P  + S++N       G+  Q W +++DDDIPEW+P  PLT  H+  + PP   F   V P  VNQ               P+ M+Q   +   QG G W  QPPG+   Q +++A+QP+ GQ+ G P+  AGQPP    R+D APRSRGF
Sbjct:    1 MSSNLLSQPLSVPT---KQMNPISNELGSSIPNVQMGMTGGMSNSPRLQHFEISKKQMGLMESSPNNLGLQNPSVLNKQMGSMEQQVNGPGLQQFLRPNQQIGDMEAMLSNMGSQKMLLPSKRTAVGEPIVRNSVAQQL-MSNKNVARVEAFTNATGMQQLPSPNKKTIVVHSNFSTPASQNLPASTKKMVRNESISGRSGTKQSQTPKNRTTQMEPSAKVQTESFESVRSKMRESLASALALVTQQQDKTSNEE------SNSGNQQMQQGPQRTESTSMPADDADHVSENSTDSLLSKESCSAGRANKGHSRSQGIFVNESMGESAQTWKGDGHLIQCNTVMPNEDVSFGDNFFVKDELLQGNGLAWALDLDVDVGEMKEIQIAKKPKL----------ENENVGGVKEEQAVQ-----------------SPKSMALRIEVELFKLFGDVNKKYKERGRSLLFNLKDRNNPELRERVLSGELPPERLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEQDDVVSVEVSVGTSALTRQESKNKDMEAHRSSKDD-------VVGEKSSSGNQDLSCSLTIPNDGTDLLQGLMVDEFKDAEFLPPIVSLDEFMESLDSEPPFENLPMDGGKMISPSDKARSDLGSKDPVGATTPEKSDKVEVKFTDSDVKM-------KSEESSKEPKSSPPDTASKCKRVWDGELQLAISAMVTVVGFFKSGEKTSTKEWPSSLEIKGRVRLDAFEKFIQDLPMSRSRAVMVVHFVLKEGSSEDDRANLSEAAHSYVLDERLGFAEPAPGVELYLCPPHTKIVEMLCKHLSKDHPDALNSIDSGLIGIIVWRKPHLSSAISPNSSAHYRHSSKRQHFTPRKHHEKDPIMNANFASKQTVP-----------PTGDDDNDIPPGFGPAAARDEDDLPEFNFSGPTSPSLPKHFNSTKMAPFRPVDQVRELIHKYGQPGSNVSSRN------VGIRTQPW-NNEDDDIPEWQPQ-PLTQHHLPLQPPPVLNFQLPVLPQAVNQL--------------PVNMVQGFVAP-PQGGGMW-QQPPGYSGLQPNNIATQPSGGQYYGVPL--AGQPPSIVRRQDAAPRSRGF 1053
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DHF0 (TFIIS central domain-containing protein {ECO:0000259|PROSITE:PS51321})

HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 541/1142 (47.37%), Postives = 721/1142 (63.13%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKS-KPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQT-PASNRRTVKNDLNSNKPASQRVQTPKGRTAQI--GTPRQTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAA-VAHENIKDDIQTKDISLVNNPSHRLSTFAENL-THEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADT-QTKTPLDKLSAETGENSESSKLASKDVDNRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNFRRQ--EKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSG---SSNPTQSSRLSSNPSRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLT--HVQTR-PPARGFHQAVQPPLVNQTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPPGF---QQSSLASQPNIGQFQGGPVAQAGQPPPGNWRRD-APRSRGF 1121
            MSNNLVSQ LS+      QM P   +++SS+ N+QMG+ G +        F +S +QM L++      G Q+ ++ N  +G+ME  V   GL +  +P+Q+   M+AM +N G QK+  P+KR A  EP+  ++V +QL M NK    +++ + +  +      N+K   + S  +    Q  PAS ++ V+N+  S +  +++ QTPK RT Q+      Q ESFE+VR KMRESLASALALV Q      +QEK+   +  +  + + Q  + +ESTS+P D A    EN  D + +K+ S  +  +++ S+ ++ +  +E I     TWK D      N V+P EDV+F D+FF KDELLQG+GL+W  ++ ++V   +++Q +++  +           ++N+    EE+  Q                 +P+ +A  IE ELFKLFG VNKKYKE+GRSL+FNLKDRNNPELRE+VMSG++ PE+LCSMTAEELASKELS+WR AKAEELAQM+VLP+ D D RRLV+KTHKGE+QVEVEQDD +SVEVSVG + L + +  +K+ +    S KD+      V SEK S    D S SLTIP DGTDL+QGL+ DEFKDAEFLPPIVSLDEFMESL+SEPPF+ L  D  +  +P DK  ++ G          +  D    K TD D KM       KS + +KE K   PD  S  + VWEG LQL ISA++TV+G ++SGEKTSTKEWPSSLEIKGRVRLDAFEKF+Q+LPMSRSRAVMV+ FVLK  S  DDRA+L EA+ SYVLDERLGFAEPA G+ELYLCPPH KI+E+L KHLSKD  + +NS D+GLIG++VWRK HLSS ISPNS++HH+HSSK+Q    R+  EK+  +NAN   +  VP           P+G+DD+DIPPGFGP  ARD+DDLPEF+FSG   SS P   +     P RPVDQ+RELI KYG+   + S++N       G+  Q W +++DDDIPEW+P  PLT  H+  + PP   F   V P  VNQ               P+ M+Q   +   QG G W  QPPG+   Q +++A+QP+ GQ+ G P+   GQPP    R+D APRSRG+
Sbjct:    1 MSNNLVSQTLSVPT---KQMNPISNELESSIPNVQMGMTGGMSYSPRLQHFEISKKQMGLMESSPNNLGLQNPSVLNKQMGSMEQQVSGPGLQQFLRPNQQVGDMEAMLSNMGSQKMLLPSKRTAVGEPIVRNSVAQQL-MSNKNVARVEAFTNATGMQQLPSPNKKTIVVHSNFSTPALQNLPASTKKMVRNESISGRSGAKQSQTPKNRTTQMEPSAKVQKESFESVRLKMRESLASALALVTQ------QQEKTSNEESISGNQQMQQGPQRTESTSMPADDADHVSENSTDSLLSKE-SCSSGRANKGSSRSQCIFVNESIGESAQTWKGDGHLIQCNTVMPNEDVSFGDNFFVKDELLQGNGLAWALDLDVDVGEMKEIQIAKKPKL----------ENENVGGVKEEQAVQ-----------------SPKSMALRIEIELFKLFGDVNKKYKERGRSLLFNLKDRNNPELRERVMSGELPPERLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEQDDVVSVEVSVGTSALTRQESKNKD-MEAHRSAKDD------VVSEKSSSGNQDLSCSLTIPNDGTDLLQGLMVDEFKDAEFLPPIVSLDEFMESLDSEPPFEILPMDGGKMISPSDKARSDLGSKDPVGATTPEKSDKVEVKFTDSDVKM-------KSEESSKEPKSSPPDTASKCKHVWEGELQLTISAVVTVVGFFKSGEKTSTKEWPSSLEIKGRVRLDAFEKFIQDLPMSRSRAVMVVRFVLKEGSLEDDRANLSEAVHSYVLDERLGFAEPAPGVELYLCPPHTKIVEMLSKHLSKDHPDALNSIDSGLIGIIVWRKPHLSSAISPNSSAHHRHSSKRQHVTPRKHHEKDPIMNANFASKQTVP-----------PTGDDDNDIPPGFGPAAARDEDDLPEFNFSGPTSSSLPKHFNSTKMAPCRPVDQVRELIHKYGQSGSNVSSRN------VGIRTQPW-NNEDDDIPEWQPQ-PLTQHHLPLQPPPVLNFQPPVMPQAVNQL--------------PVNMVQGFVAP-PQGGGMW-QQPPGYSGLQPNNIATQPSGGQYYGVPL--VGQPPGIVRRQDAAPRSRGY 1053
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9FBS4 (TFIIS central domain-containing protein {ECO:0000259|PROSITE:PS51321})

HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0
Identity = 535/1218 (43.92%), Postives = 709/1218 (58.21%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKSKPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQ-TPASNRRTVKNDLNSNKPASQRVQTPKGRTAQIG-TPR-QTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAAVAHENIKDD-----IQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPEDGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPA-DGTDLMQGL-IEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPLDKLSAETGENSES-----------------------------------------------------SKLASKDVDNRT---GKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNFRRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPTQSSRLSSNP----------------SRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLTHVQTRPPARGFHQ-AVQPPLVN--------QTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPPG----FQQSSLASQP-NIGQFQGGPVAQAGQPPPGNWRRDAPRSRGF 1121
            MSNNLVSQQL + +  M Q+EP   K D SV +MQ+G MGS+ +  ASHQ +M + Q+ LV PLS     Q  +MSNT + ++E+  +N+G            ++ +  N   Q L    KRKA +EP++N+T  +QLS PNKR   ++      ++   SG NRK   +QS+S   GSQ  P  N++ V     S K  SQR   PK +TA +  +P+ Q+ESFE+VRSKMRESLA+ALALV++ +  S    K+P     ++   + Q+ + S+   +   AA A +++ ++     +  +D S   N + + S        E I N   T K D S++    VLP +DV+F D FF KDELLQG+GLSW  +  +EV  K+++ +           E+++  +D L                 GRD+     +T + L+F+IEAELFKLFGGVNKKYKE+GRSL+FNLKDRNNPELRE+VMSG+I PE+LCSMTAE+LASKELS+WR AKAEE AQM+VLP++GD RRLVKKTHKGE+QVEVEQDD + +EVSV A++L   +   KE   P+ S  D  KD       K + E  D +Y+LTIP+ + TDLMQGL ++D  KDAEFLPPIVSLDEFMESL++EPPF+ +  D    +  DK  ++ G  S+S                                                     S+   K  D+ T    + +  + K ++  +  KS D   + + + P   S  + VWEG LQL+ S + +VIG+++SGEKTS  EWP SLEIKGRVRLDAFEKFLQELP+SRSRAVMV+HF LK  S   + ASL+E  DSYVLDER+GFAEPASG+ELY CPPH +  E+L K L  +Q E +N+ DNGLIGV+VWRKA L+S ISPNS+S H+   K     RRQE+  N+N N TP+   P    P         +DDDD+PPGFGP +ARD+DDLPEF+FSG S P+     + NP                SRP DQ+RELI KYG+P     +  WQ  R  G+A+Q W +DDDDDIPEW+P AP      +     FHQ  ++P LVN        Q  + Q ++S Q   P M   Q    +W      WV  PPG     Q S+L  QP N+GQF G  V Q     PG WR++AP+SRGF
Sbjct:    1 MSNNLVSQQLPIPSMQMGQLEPILSKGDPSVQDMQIGQMGSVSNGPASHQHSMLNTQVGLVGPLSSNPVLQRLSMSNTRMVDIETNANNLG-----------PVEMVQNNAASQHLSASIKRKAPLEPLYNNTAVQQLSTPNKRVAQLEHRPWLQQV---SGPNRKAVQMQSMSTSHGSQHLPTPNKKVV-----SGKSGSQRSSVPKNQTASVQPSPKAQSESFESVRSKMRESLAAALALVSEQKEKSLSPGKNP---QSDSASALGQSRENSQPAELVSGAADAPDHVSEEPKVTLLSHEDCSAQKNNNGK-SVSVRISADENIHNSTQTMKADDSETQSRNVLPGQDVSFGDEFFVKDELLQGNGLSWVLDSDIEVAEKREIHTV----------EEQMSENDEL-----------------GRDQKEEADQTLQILSFKIEAELFKLFGGVNKKYKERGRSLLFNLKDRNNPELRERVMSGEIPPERLCSMTAEDLASKELSQWRMAKAEEFAQMVVLPDEGDIRRLVKKTHKGEFQVEVEQDDTVQMEVSVVASSLNSRESKTKEMEAPNPSKPDGAKDEVDASGGKSNTEDQDIAYTLTIPSNECTDLMQGLMVDDVLKDAEFLPPIVSLDEFMESLDTEPPFEIVPVDAGKTSNSDKDDSKLGSESKSSELTPKDDVMKAEPKKGGDAEEKSNEGDAGVKYSDSHADMKPSGGQTDGRYNDSQAVVKSSDSHTDEKSRVSHAEVKFSESYSHLKSSDSHAKSEIVPPAGVSKGDHVWEGVLQLNTSVMASVIGIFKSGEKTSADEWPGSLEIKGRVRLDAFEKFLQELPLSRSRAVMVMHFALKEGSLESEHASLQEVADSYVLDERVGFAEPASGVELYFCPPHKRTREMLSKILPTEQIEALNNIDNGLIGVIVWRKAQLTSKISPNSSSLHQKHKKHNITSRRQEE-TNMNVNFTPK---PRGLTPTNFKPPTEDDDDDDVPPGFGPASARDEDDLPEFNFSGGSVPSSQQNFTQNPSRGPGTVPFHALSQTTSRPADQMRELIHKYGQPKTGVPSGKWQDNRGFGVAMQPW-NDDDDDIPEWQPQAPQHQHPPQQSVHTFHQPMLRPHLVNQQPLGSTPQQPSHQSMMSLQSLQPTMNATQVPQGTW------WV--PPGQGSSQQPSNLNCQPNNVGQFYGRGVGQ-----PGAWRQNAPKSRGF 1150
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H3F9 (TFIIS central domain-containing protein {ECO:0000259|PROSITE:PS51321})

HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 544/1213 (44.85%), Postives = 707/1213 (58.29%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKS-KPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHEL--PNHSGTNRKGGTLQSVSAVSGSQ-TPASNRRTVKNDLNSNKPASQRVQTPKGRTAQIG-TPR-QTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAAVAHENIKDDIQ--------TKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTI-PADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPLDKLSAETGENSESSKLASKDVDNRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMA----------------------ERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQ--NFRRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPTQ---SSRLS-------------SNPSRPVDQIRELIQKYGKPAESQSTKNWQGK-RSAGLAVQAWDDDDDDDIPEW-----------------------RPDAPLTHVQTRPPARGFHQAVQP--PLVNQTATTQHVLSPQVAMPPMTMIQNNPS-SW--QQGNGRWVAQPPGFQQSSLASQPNIGQFQGGPVAQAGQPPPG------NWRRDAPRSRGF 1121
            +S+    QQLS+ N  M+Q+EPT   +DSS+ NMQMG + ++P+ +     ++S +QM+L++P+S    P    +S+  LG ME   +N+   +S  P+++   +D+   N G Q+   PNKRK  +EP+ NS   +Q+SMPNKR   M+      +L  PN      K   +Q      GSQ     N++ V+ D  S K A Q+V TPKG+T Q+  +P+ ++ESFE+VR+K+RESLA ALALV Q Q   P  EK     +  N    +   + S+  S P ++A    NI D +         +K+       +   S   E LT+E   +    WK D  +   N VLP+ + +F+D+FF KDELLQG+GLSW  ++  EV   +++ +++  N+ G                 +E V           +E   T+++P+ LAFEIEAELFKLFGGVNKKYKEKGRSL+FNLKDRNNPELRE+V++G+I+PE+LCSMTAEELASKELSEWR AKAEELAQM+VLP+ + D RRLV+KTHKGE+QVE EQDD  SVEVSVG ++L + +   KEK     S+ D  K    +  EKGS++  D   SLTI P +  DLMQGL+ DEFKD EFLPPIVSLDEFM+SL+SEPPF+NL  D +  TP       +G+++    ++ K  D+   K   +  K  K DA EK  D   + +   P  TS +                      + VWEG LQL++S++ TV+  ++SGEK STKEWP  LEIKGRVRLDAFEKFLQELPMSRSRA MV+ F  K  SS D RA+L E  DSYVLDER+GFAEPA GMELY CPPH + LE++ KHL KDQTE +NSTDNGLIGVVVWRKA L+STISPNS+S HKH +KKQ     R  EK+ N+N+N T +   P   AP  +   PS +DDDDIPPGFGP  +RD+DDLPEF FSG SN +    S+R +              N  RPV+Q+R+LIQKYG+     S+ NW+ K R  G   Q W DDDDDDIPEW                       +P  P TH+Q      G  Q  QP  PL    + T   L   V +  +   QN P+ SW  QQ  G W   P G               QG P  Q   P PG      NWR+D PRSRGF
Sbjct:   73 LSSTASDQQLSLPNQQMAQLEPTSNNLDSSMPNMQMGQIRTLPNDHGLQHLSVSSKQMELLEPISCTHMPPMIPVSSKQLGQMEPRANNLVAQQSLMPNRQLEVVDSNSNNFGLQQSSTPNKRKVPMEPISNSPGAQQISMPNKRVAQMEHRPWLQQLFVPN------KKIPVQVAPNTPGSQHLTVPNKKMVRTDSMSRKSAPQQVVTPKGQTTQMQPSPKVRSESFESVRTKLRESLADALALVYQQQDKPPHMEK-----NSKNEATNTSIPRQSQEDSEPAESASTAVNIVDQVSEKPSETLPSKEDCSAQKCNDGQSASQETLTNENNGDYAQNWKYDRQEFQLNTVLPDAESSFSDNFFVKDELLQGNGLSWALDLDTEVPEPKEISTAKNENLDG-----------------KEVV-----------NEGQKTVQSPQTLAFEIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVVAGEISPERLCSMTAEELASKELSEWRIAKAEELAQMVVLPDSEVDIRRLVRKTHKGEFQVEFEQDDGASVEVSVGTSSLTRVRPRTKEKEARRPSEPDGTKSKTNLIEEKGSLDQPDTPCSLTILPNEDPDLMQGLMGDEFKDEEFLPPIVSLDEFMQSLDSEPPFENLPVDAEKVTP------ASGKDNSGVNVSPKGPDSTLNKPDKMHEKDAKSDANEKPNDGHVQSETSLPGGTSKSNEKSSHVHMQSESAPHVDQKKGDYVWEGLLQLNVSSMATVVCFFKSGEKASTKEWPGFLEIKGRVRLDAFEKFLQELPMSRSRATMVVRFAWKEGSSEDGRANLCEVADSYVLDERVGFAEPAPGMELYFCPPHTRTLEMISKHLYKDQTETLNSTDNGLIGVVVWRKAQLTSTISPNSSSLHKHGTKKQHFSTRRHHEKDANMNSNFTSKPSHPLGSAP--NIPEPSTDDDDDIPPGFGPAASRDEDDLPEFQFSGGSNSSTAPFSARTTPGGPGVAPFNQPPHNSPRPVEQMRQLIQKYGQSGAQPSSGNWRDKGRIIGHVTQPWADDDDDDIPEWQPQAPQQQLQPPQPTPPVYGFQAQPVLP-THMQQH---LGAAQPQQPLGPLPTPLSMTLQSLQSSVNL--VQAPQNPPTPSWQQQQQQGSWWVPPSG--------------PQGLPSVQGNAPYPGTGQTGINWRQDVPRSRGF 1218
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1UVS0 ((PHD finger protein 3 {ECO:0000313|EMBL:KAB1204534.1}))

HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 540/1233 (43.80%), Postives = 723/1233 (58.64%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKSKPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQTPASNRRTVKNDLNSNKPASQRVQTPKGRTAQIG-TPR-QTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDA-----------AVAHENIKDDIQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLP-EDGDRRRLVKKTHKGEYQVEVEQDDEISVEV-SVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLTIPA-DGTDLMQGLI--EDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPL-DKLSAETGENSESSKLASKDVDNRTGKA---------TDLD---------SKMTKQDAEEKSGDYAKEQKQ--------------------------------------------LNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNFRRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSG------NDDDDIPPGFGPGNARDDDDLPEFSFSGSSNPTQSSRLSSNP-------------SRPVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLTHVQTRPPARGFHQAV-------QPPLVN--QTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWV--AQPPGFQQSSLASQPNIGQFQGGPVAQAGQPPPGNWRRDAPRSRGF 1121
            MSNNLVSQ LS+ +  + Q+EP    ++SSV + QMG+MGS+ +  A+HQ+++S++Q++L++P S   G Q  + +N     +E   + +GL +  P+++   M+ M  + G Q+L    KRKAA EP++++T  +QL  PNKR   ++       +   SG  RK   +Q +S+  GS   ++  + V     S+K  SQR   PK +TA +  +P+  TESFE+VRSKMRESLA AL LV+Q +  S   EK+      +    I +N + +ES S  +DA            ++HE     I        N+ S R+   A+  T E     P T K+D  ++  N VLP EDV+F D FFAKDELLQG+GLSW  +  M+V  K++  ++         +EQK  H + +  K E                   +++TP+ +AF+IEAELFKLFGGVNKKYKEKGRSL+FNLKDRNNPELRE+VMSGDI PE+LC+MTAEELAS+ELS+WR AKAEE AQM+VLP ED D RRLVKKTHKG+ QVEVEQD+ + +EV SV A++L   + N KE      S  D  K+      E+ + +  +  Y  TIP+ +G DLMQGL+  +D  KDAEFLPPIVSLDEFMESLN+EPPF+NL  D    TP  DK  +E G  S++S +ASK +D  T K          +D+D         +K+T+ D + K+ DY  ++                                              ++P   S ++ VWEG LQL+ SA+ +V G+++SGE+TS KEW +SLEIKGRVRLDAFEKFLQELP+SRSRAVMV+HFVL   S   + ASL E  DSYVLDER+GFAEP+ G+ELY CPPH +  E+L K L  +  E +N+ DNGLIGV+VWRKA L+S ISPNS+SH KH  KKQ    R+++  N+NAN TP+      Q P R G  PS       ++DDDIPPGFGP  ARD+DDLPEF+FSG S P+       NP             SRPVDQ+REL+ KYG+P    S  NWQ  R  G+AVQ W ++DDDDIPEW+P AP   +  +     FHQ V       QPP V+  Q  + Q +++ Q    P+++ Q    +W      WV   Q    Q S+L  QPN+GQF G P    GQP    WR++AP + GF
Sbjct:    1 MSNNLVSQHLSIPSVQIGQLEPVLNNMESSVQDRQMGLMGSVSNGTATHQYSISNKQVELLEPFSIDPGLQRLSTANIQTVGIEHNGNRMGLQQFIPNRQLEPMETMLNDAGSQQLSPSIKRKAAAEPLYDNTAAQQLLFPNKRVAQLEHRPWLQPV---SGPYRKPAQVQYMSSTPGSLHSSTQHKKVV----SSKSGSQRSSIPKNQTAGLQPSPKGHTESFESVRSKMRESLAGALELVSQLKDKSSSPEKNSQSDSASASGQIQENAQPAESVSTALDAPGNESGEPKVTLLSHEACSAHISNNG----NSGSARI--LADGKTGES----PQTQKSDGQETQSNYVLPGEDVSFGDDFFAKDELLQGNGLSWILDSDMQVVGKREFHTA---------EEQKSGHYELVRQKEE-------------------SIQTPQMVAFKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGDIPPERLCAMTAEELASEELSQWRIAKAEEFAQMVVLPDEDVDIRRLVKKTHKGDIQVEVEQDESVPMEVVSVRASSLTPRESNIKEMEASHPSKPDRTKNKVDASGERSNSDDQENPYEFTIPSSEGNDLMQGLMVDDDALKDAEFLPPIVSLDEFMESLNAEPPFENLPVDAGKVTPFSDKDDSELGSESKTSNVASKAIDVTTDKTETVDVTNSKSDVDQKSNEGDAKAKLTEGDDDMKTSDYQADKNYNSEESVVKHDTEADVNSNVTHPEVKSTESSADFRSSDRHAKSEIVSPSGISNSDHVWEGLLQLNTSAMASVAGIFKSGERTSAKEWSTSLEIKGRVRLDAFEKFLQELPLSRSRAVMVMHFVLVEGSVESEDASLHEVADSYVLDERVGFAEPSPGVELYFCPPHKRTREMLSKILPTEHIEALNNIDNGLIGVIVWRKAQLTSRISPNSSSHQKH--KKQNVTSRRQQETNMNANFTPK------QNPSR-GLTPSNFKPSPDDEDDDIPPGFGPPAARDEDDLPEFNFSGGSVPSSQHNFVQNPYRGLGNQSVSQNSSRPVDQMRELVHKYGQPGAGGSFGNWQENRGFGVAVQPW-NEDDDDIPEWQPQAPQRQLPPQQSVHSFHQPVLRPHLVNQPPFVSAPQQPSHQSMMALQ---SPLSLTQAPQGTW------WVPPVQANSQQSSNLGCQPNVGQFSGVPGRGVGQPGAA-WRQNAPNNGGF 1168
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q2S3 ((PHD finger protein {ECO:0000313|EMBL:PSS01166.1}))

HSP 1 Score: 837.41 bits (2162), Expect = 0.000e+0
Identity = 528/1133 (46.60%), Postives = 700/1133 (61.78%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSV-NMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKSKPDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVPRQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQTPAS-NRRTVKNDLNSNKPASQRVQTPKGRTAQIG-TPR-QTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAA-VAHENIKDDIQTKDISLVNNPSHRLSTFAENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQ--RNDKEKLPPSSSDK-DELKDSKKVESEKGSMETMDPSYSLTIPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADT-QTKTPLDKLSAETGENSESSKLASKDVDNRTGKATD-LDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLS-STISPNSTSHHKHS-SKKQQNFRRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSG--NDDDDIPPGFGPGNARDDDDLPEFSFSG----SSNPTQSSRLSSNPSRP--------VDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWD-DDDDDDIPEWRPDAPLTH--VQTRPPARGFHQAVQP------PLVNQTATTQHVLSPQVAMPPMTMIQNNPSSWQQGNGRWVAQPPGFQQSSLASQPNIGQFQG 1097
            MS NLVSQ LS+ +     M+P   K+++++ NM+MG+MG I     S  F         V+P+S   G  +  + N  +  M+ M          P+Q+   M AM  N G QK+   +KR+A  EPM+ ++  +QLSMPNK    ++  S +  L   +  N++   L S S   G Q  ++ N++ V+N+  S +  ++++QTPK +T Q+  +PR QTESFE+VRSKMRESLASALAL  Q Q+ +     S +  +  N      + + +ES SVPVD A     N  D +  ++ S +N  +   ST   + T E + +   +W N   +   +  LP E+V+F DSFF +DELLQG+GL+W  ++  +V+A Q +            +EQ  K      L  E+   +   Q G          ++P+ LAF+IEAELFKLFGGVNKKYKEKGRSL+FNLKDRNNPELRE+VMSG+I PE+LCSMTAEELASKELS+WR AKAEE AQM+VLP+ D D RRLVKKTHKGE+QVE EQDD +SVEVS+G ++L + Q   ND E  P   SDK DE+K+ + V  EK   E   PSY+LTIP+DGTDL++GL+ D+FKDAEFLPPIVSLDEFMESLN+EPPF+NL  D  +T +P DK S+E G  +    LAS++    T + +D ++      D + KS + + E K  +P   S  + VWEG LQL++SA++TVIG +RSGEK STK WPSSLEIKGRVRLDAFEKF Q LPMSRSRAVMV+HF LK  SS +D ASL E + SYV DERLGFAEP  G+E+Y CPPHP ILE+L KHLSK  +  +NS +NGLIG++VWR++HLS S  SP  TS  +H+ S  +++ ++Q+   NV  N   + P            LP G  + DDDIPPGFGPG  R++DDLPEF+FSG    S +       +  P RP        VDQ++EL+QKYG+   S S++N          ++ W+ DD+DDDIPEW+P AP  H      PPAR FH  V P      P     ATT  V       PP++M+QN   SWQQG+ RWV QPPG   S+L SQP+ G++ G
Sbjct:    1 MSTNLVSQPLSIPD---KHMDPISNKLEAAIPNMRMGMMGGISSSPTSQHF---------VEPVSNNFGLHNSPVLNMQVRQMDLM----------PNQQMGNMQAMLNNLGSQKVSLLSKRRAGGEPMYGNSGGQQLSMPNKNVVQIEPFSNNPGLQQLAPPNKRPIQLHSKSITPGPQNLSTPNKKMVRNESISGRSGTKQLQTPKNQTTQMEPSPRVQTESFESVRSKMRESLASALALGTQVQAKA-----SNVESNSGNSRQTHGDSQHAESASVPVDGADNLSANPTDSLPLEESSSLNT-NDVQSTSLGDFTSESMGDSAQSW-NGGRELQCDTFLPNENVSFDDSFFVRDELLQGNGLTWALDV--DVDAGQTM------------EEQIAKKPK---LDNEDAAGEGKEQVG----------QSPQSLAFKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEIPPERLCSMTAEELASKELSQWRMAKAEEFAQMVVLPDSDVDVRRLVKKTHKGEFQVEFEQDDGVSVEVSIGTSSLTRVQSKNNDTEAHP---SDKGDEIKEKENVVDEKRRSENQGPSYNLTIPSDGTDLIEGLMVDDFKDAEFLPPIVSLDEFMESLNAEPPFENLPVDGGKTISPSDKESSEGGYAATPPDLASREPAEGTQEKSDKIEVMCIDSDVKTKSRETSIESKP-SPGAASKVDHVWEGVLQLNVSAMVTVIGFFRSGEKISTKNWPSSLEIKGRVRLDAFEKFFQGLPMSRSRAVMVVHFALKEGSSENDHASLGEVVQSYVSDERLGFAEPTPGVEIYFCPPHPNILEMLTKHLSKGHSHFLNSKNNGLIGIIVWRRSHLSTSATSPKYTSKRQHNHSTTRKHHQQQDSYMNVK-NFASKQP-----------NLPMGDDDVDDDIPPGFGPGATREEDDLPEFNFSGVCKNSKHIPSCGWGTMTPFRPNTSVTPRSVDQMKELVQKYGQIGNSVSSRN---------GIRPWNGDDEDDDIPEWQPQAPTQHHLPPPPPPARNFHHPVLPHPRAAMPRQPPQATTVSV------QPPLSMVQNVGLSWQQGS-RWV-QPPGPPHSNLGSQPSGGRYYG 1044
[Close]
BLAST of XM_017402539.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835D7Y1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8393316.1}))

HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 528/1192 (44.30%), Postives = 690/1192 (57.89%), Query Frame = 0
 
Query:    1 MSNNLVSQQLSMSNADMSQMEPTYVKVDSSVNMQMGVMGSIPDVYASHQFAMSDQQMQLVDPLSYISGPQSYTMSNTHLGNMESMVDNVGLHKSK-PDQKDVQMDAMFTNPGPQKLFQPNKRKAAVEPMFNSTVP--RQLSMPNKRATHMDSLSTSHELPNHSGTNRKGGTLQSVSAVSGSQTPASNRRTVKNDLNSNKPASQRVQTPKGRTAQIG-TPR-QTESFEAVRSKMRESLASALALVNQNQSSSPKQEKSPLHKDDNNPEVISQNVKLSESTSVPVDAAVAHENIKDDIQTKDISLVNNPSHRLSTF------------------AENLTHEGIENLPDTWKNDVSDSMYNAVLPEEDVAFTDSFFAKDELLQGHGLSWEWEIGMEVEAKQQLQSSRQVNVPGDDDEQKVKHSDNLTLKTEEKVAQAANQAGAGRDESFYTLRTPEKLAFEIEAELFKLFGGVNKKYKEKGRSLMFNLKDRNNPELREKVMSGDITPEKLCSMTAEELASKELSEWRTAKAEELAQMIVLPE-DGDRRRLVKKTHKGEYQVEVEQDDEISVEVSVGATTLGQFQRNDKEKLPPSSSDKDELKDSKKVESEKGSMETMDPSYSLT-IPADGTDLMQGLIEDEFKDAEFLPPIVSLDEFMESLNSEPPFDNLAADTQTKTPLDKLSAETGENSESSKLASKD-VDNRTGKATDLDSKMTKQDAEEKSGDYAKEQKQLNPDMTSMAERVWEGALQLHISALITVIGLYRSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRSRAVMVIHFVLKADSSADDRASLREAIDSYVLDERLGFAEPASGMELYLCPPHPKILELLGKHLSKDQTELINSTDNGLIGVVVWRKAHLSSTISPNSTSHHKHSSKKQQNFRRQEKNNNVNANMTPRTPVPSTQAPIRSGTLPSGNDD--DDIPPGFGPGNARDDDDLPEFSFSGSSNPTQSSRLSSNPSR------------PVDQIRELIQKYGKPAESQSTKNWQGKRSAGLAVQAWDDDDDDDIPEWRPDAPLT------------------HVQTRPPARGFHQAVQP--PLVNQTATTQHVLSPQVAMPPMTMIQNNPS-SWQQGNGRWVAQPP---------GFQQSSLASQPNIGQFQGGPVAQAGQPPPG-NWRRDAPRSRGF 1121
            MSNNL ++QLS+ N  + QMEP                  +P+       ++ ++QM  ++P+    GPQ   + N  +  M  M++  G  +   P+++  Q++ M  N G Q+L   NKR+A +EPM  S  P  +QL  PNKR   M  +S      N+ G+                Q  A N+RT +    S+KP SQ++  P  RTAQ+  +P+ QTESFE+VRSKMRESLA++L LV + Q+  P   KS    +      +SQ++  +   S+P ++            T DIS    P   L T                    E  T+E  E+   TWK D  +     V P ED +F++SF  KDELLQG+GL W  +  +EV    ++QS+++   P  ++E+                       G GR+ +    ++P+ LA +IEAELFKL+GGVNKKYKEKGRSL+FNLKDRNNPELRE+VMSG+I+PE+LCSMTAEELAS+ELS+WR AKAEE AQM+VLP+ + D RRLVKKTHKGE+QVE+EQDD +SVEV+VGA++L Q +    E      S  +E K+      E+ ++   + S +LT +P DGTDLM GL+ DE KD EFLPPIVSLDEFM+SL+SEPPF+NL  D      +   +       +SS L S D VD    K   +D K TK    +KS D   E +  +P+  S  E VWEG LQL+IS+++TVIG+++SGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSR+RA+MV+ F  K  S    R SL E +DSYV+DER+GFAEP +G+ELY CPPH +I E+L K+L KDQTE +N+TDNG+IGV+VWRKAH++S ISPNS+SHHKH+SKKQ   RRQ++ ++ N N T   P+P    PI    +P  +D+  DD+PPGFGP  ARDDDDLPEF F G SNP     L  NPSR            PV+Q+RELI KYG+   S ++  WQ  RS G+ VQ W  +DDDDIPEW+P  P                     +Q   PA+  H ++QP  PL          L     M  M   Q   + SWQQ  G W A P          G Q S    QPN GQF G P    G  P G +WR+D PRSRGF
Sbjct:  270 MSNNLGTEQLSVPNRQIGQMEP------------------MPNNLGLQHLSIPNKQMGQIEPMPNNLGPQQLPIPNKQMRQMVPMLNKPGSQQLLIPNKRMGQLETMPNNLGSQQLLS-NKRRALMEPMVMSNNPGSQQLPSPNKRLAQMKPVS------NNPGSQ---------------QLSAQNKRTAQMVSMSSKPGSQQLSIPNKRTAQMEPSPKGQTESFESVRSKMRESLAASLTLVPEKQNKLPTVGKS---SESEAASTLSQSLSQTHEDSLPTEST--------STTTLDISSCAVPERPLETPPSKDHDSAQKYNDGQSVPQEIFTNENTEDSTQTWKCDGQEFELKHVFPVEDASFSNSFLIKDELLQGNGLCWVSDFDIEVVETNEIQSAKR---PKFENEEV---------------------GGDGREPAS---QSPQTLAVKIEAELFKLYGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEISPERLCSMTAEELASEELSQWRIAKAEEFAQMVVLPDSEVDIRRLVKKTHKGEFQVEIEQDDGVSVEVAVGASSLAQIRPKMSETDAQVPSKPNETKNEVDAVRERSNLGEKNSSSNLTTLPHDGTDLMHGLMVDELKDEEFLPPIVSLDEFMQSLDSEPPFENLRVDAGHTITISDENCSDVSKLDSSDLGSLDPVDTAPDKPDKMDEKRTKTVGNKKSSDTCIESELCHPNGASKIEHVWEGLLQLNISSMVTVIGVFKSGEKTSTKEWPSSLEIKGRVRLDAFEKFLQELPMSRNRAIMVVQFCWKEGSPESGRESLCEVVDSYVVDERVGFAEPVAGVELYFCPPHQRIFEMLAKYLPKDQTEALNATDNGIIGVIVWRKAHVTSAISPNSSSHHKHNSKKQHYLRRQQEKDSNNVNTTTVPPLPLVPPPINR--VPPSDDEPIDDVPPGFGPAAARDDDDLPEFEFVGGSNPPVPQFLGPNPSRGPVVTPFRPPPPPVEQMRELIHKYGQTETSSNSLKWQHSRSVGVEVQPW--NDDDDIPEWQPQPPQQQLPPPPPLPVHSFQQQTLQLQHFAPAQP-HHSLQPRGPLAAPLPIPLQPLQQPQQMHMMQGSQQTVAPSWQQ--GAWWAPPGSGGHSVQGNGLQPSQFGGQPNEGQFYGMP--GFGTMPNGMDWRQDGPRSRGF 1374
Match NameStatsDescription
A0A7J0E043E-Value: 0.000e+0, PID: 48.47TFIIS central domain-containing protein {ECO:00002... [more]
A0A5B7BQR9E-Value: 0.000e+0, PID: 50.56TFIIS central domain-containing protein {ECO:00002... [more]
A0A2R6QZJ2E-Value: 0.000e+0, PID: 47.85(PHD finger protein {ECO:0000313|EMBL:PSS17793.1})[more]
A0A2R6PIV3E-Value: 0.000e+0, PID: 47.41(PHD finger protein {ECO:0000313|EMBL:PSR91807.1})[more]
A0A7J0DHF0E-Value: 0.000e+0, PID: 47.37TFIIS central domain-containing protein {ECO:00002... [more]
A0A2N9FBS4E-Value: 0.000e+0, PID: 43.92TFIIS central domain-containing protein {ECO:00002... [more]
F6H3F9E-Value: 0.000e+0, PID: 44.85TFIIS central domain-containing protein {ECO:00002... [more]
A0A6A1UVS0E-Value: 0.000e+0, PID: 43.80(PHD finger protein 3 {ECO:0000313|EMBL:KAB1204534... [more]
A0A2R6Q2S3E-Value: 0.000e+0, PID: 46.60(PHD finger protein {ECO:0000313|EMBL:PSS01166.1})[more]
A0A835D7Y1E-Value: 0.000e+0, PID: 44.30(Uncharacterized protein {ECO:0000313|EMBL:KAF8393... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.