Resource Type:
Polypeptide
Name:
XM_017399729.1
Identifier:
XM_017399729.1-protein
Sequence:
MVANKMRWPLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIY
GTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYK
EDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKG
ITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNW
FTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILC
HASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHL
GFLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFY
MQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKA
IMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKK
TVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYW
FQKMLSRKH
Sequence Length:
509
Sequence Checksum:
00be26863b5ede4875971bbdf9aaee32
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017399729.1, derives from mRNA, XM_017399729.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7FW21 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g119080.3.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 384/482 (79.67%), Postives = 432/482 (89.63%), Query Frame = 0
Match: A0A3Q7FW21 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g119080.3.1}))
HSP 1 Score: 833.558 bits (2152), Expect = 0.000e+0
Identity = 384/482 (79.67%), Postives = 432/482 (89.63%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++GITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLG FLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKAI YVKE YGNPT+ILAENGMD GN+T+P L DT+R+NYY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L R+
Sbjct: 648 SPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRGITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAINYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRINYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKRQ 1129
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IDM7 ((Putative beta-glucosidase 44-like {ECO:0000313|EMBL:JAP30595.1}))
HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 383/493 (77.69%), Postives = 436/493 (88.44%), Query Frame = 0
Match: A0A0V0IDM7 ((Putative beta-glucosidase 44-like {ECO:0000313|EMBL:JAP30595.1}))
HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 383/493 (77.69%), Postives = 436/493 (88.44%), Query Frame = 0
Query: 17 LLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
+L + + SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++GITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLG FLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKA+ YVKE YGNPT+ILAENGMD GN+T+P L DT+R++YY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L R+
Sbjct: 18 VLTVHSENDDVSPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRGITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAVNYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRIDYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKRQ 510
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q8VWL8 ((Beta-mannosidase enzyme {ECO:0000313|EMBL:AAL37714.1}))
HSP 1 Score: 822.387 bits (2123), Expect = 0.000e+0
Identity = 382/482 (79.25%), Postives = 431/482 (89.42%), Query Frame = 0
Match: Q8VWL8 ((Beta-mannosidase enzyme {ECO:0000313|EMBL:AAL37714.1}))
HSP 1 Score: 822.387 bits (2123), Expect = 0.000e+0
Identity = 382/482 (79.25%), Postives = 431/482 (89.42%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
SPE+T LDTGGLSR+SFPK F +GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++GITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLG FLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKAI YVKE YGNPT+ILAENGMD GN+T+P L DT+R+NYY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TL+R PKMSAYWF+K+L R+
Sbjct: 31 SPENTILDTGGLSRESFPKGFTFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRGITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAINYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRINYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLRRYPKMSAYWFKKLLKRQ 512
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2C5L0 ((Uncharacterized protein {ECO:0000313|EMBL:TMW99973.1}))
HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0
Identity = 382/482 (79.25%), Postives = 430/482 (89.21%), Query Frame = 0
Match: A0A6N2C5L0 ((Uncharacterized protein {ECO:0000313|EMBL:TMW99973.1}))
HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0
Identity = 382/482 (79.25%), Postives = 430/482 (89.21%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTGKVNWKGVAYY+RLI+YML++GITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRY EKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLG FLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKAI YVKE YGNPT+ILAENGMD GN+T+P L DT+R+NYY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L +
Sbjct: 31 SPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYMLKRGITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYHEKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAINYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRINYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKHQ 512
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1A468 ((Beta-mannosidase {ECO:0000313|EnsemblPlants:PGSC0003DMT400014415}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 382/493 (77.48%), Postives = 436/493 (88.44%), Query Frame = 0
Match: M1A468 ((Beta-mannosidase {ECO:0000313|EnsemblPlants:PGSC0003DMT400014415}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 382/493 (77.48%), Postives = 436/493 (88.44%), Query Frame = 0
Query: 17 LLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
+L + + SPE+T LDTGGLSR+SFPK FI+GTATSAYQVEG+A +GRG SIWD FL+ PGLE NNA+GE+ VDQYHRYKEDIDLMAKLNF+AYRFSISWSRIFPNGTG+VNWKGVAYY+RLI+YML++GITPYANLNHYDLPQALQ+RYNGWLGR+VVKDFADYA+FCFK +GDRVKNWF+FNEPRVVAALGYDNG+FAP RCS+P+GNCT GDS TEPY+ AHNLILCHASA QRYREKYQ+ QKG+ GILLDFVWYEPLT+GK+D YAAQRARDFHLG FLHP+VYGEYPKTMQNIV RLPKF+KEEV +VKGS D +GINQYT++YM P GYQ DW VGF Y++ GVPIGP+A+SYWLY VPWGLYKA+ YVKE YGNPT+ILAENGMD GN+T+P L DT+R++YY+SY+QQLKKTVD+GANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+K+L R+
Sbjct: 18 VLTVHSENDDVSPENTILDTGGLSRESFPKGFIFGTATSAYQVEGSASTEGRGPSIWDTFLKIPGLEPNNANGEIAVDQYHRYKEDIDLMAKLNFEAYRFSISWSRIFPNGTGEVNWKGVAYYNRLIDYMLKRGITPYANLNHYDLPQALQDRYNGWLGREVVKDFADYAEFCFKTFGDRVKNWFSFNEPRVVAALGYDNGFFAPGRCSKPFGNCTEGDSATEPYIVAHNLILCHASAAQRYREKYQEKQKGKFGILLDFVWYEPLTKGKADNYAAQRARDFHLGWFLHPLVYGEYPKTMQNIVGTRLPKFSKEEVKMVKGSFDYVGINQYTSYYMYDPHYTTPQPLGYQQDWNVGFAYDRKGVPIGPRAHSYWLYIVPWGLYKAVNYVKEHYGNPTIILAENGMDYAGNITLPKALHDTKRIDYYKSYLQQLKKTVDDGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFNTLKRYPKMSAYWFKKLLKRQ 510
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0R0IIZ3 ((Uncharacterized protein {ECO:0000313|EMBL:KRH39108.1, ECO:0000313|EnsemblPlants:KRH39108}))
HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 378/501 (75.45%), Postives = 436/501 (87.03%), Query Frame = 0
Match: A0A0R0IIZ3 ((Uncharacterized protein {ECO:0000313|EMBL:KRH39108.1, ECO:0000313|EnsemblPlants:KRH39108}))
HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 378/501 (75.45%), Postives = 436/501 (87.03%), Query Frame = 0
Query: 9 PLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
PL F + L+A AD E P++ DTGGLSRD+FPK F++GTATSAYQVEG AH+DGRG SIWDVF+++PG+ NN +GEV+VDQYHRYKEDIDLMA LNFDAYRFSISWSRIFPNGTG+VNWKGVAYY+RLINY+L+KGITPYANL HYDLP AL+ERYNG L RQVVKDFADYA+FCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ YGNCTAG+SGTEPY+ AHNLIL HA+AVQRYR KYQ+ QKGRIGILLDFVWYEPLTR K+D +AAQRARDFH+G F+HP+VYGEYPKT+QNIV +RLPKFT EEV IVKGS D +GINQYT F++ +K PGYQ DW GF Y KNGVPIGP+A SYWLY VPWG+YK++MY+KERYGNPT+IL+ENGMD PGNVT+P GL DT R+NYY+ Y+ QLKK VD+GANV+GYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF++++++K
Sbjct: 6 PLCFFITLLIAGADAAAE--PQTVRFDTGGLSRDTFPKGFLFGTATSAYQVEGMAHKDGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMASLNFDAYRFSISWSRIFPNGTGQVNWKGVAYYNRLINYLLEKGITPYANLYHYDLPLALEERYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVAHNLILSHAAAVQRYRAKYQEKQKGRIGILLDFVWYEPLTRSKADNFAAQRARDFHIGWFIHPLVYGEYPKTIQNIVGNRLPKFTSEEVKIVKGSIDFVGINQYTTFFIYDPHQSKPKVPGYQMDWNAGFAYAKNGVPIGPRANSYWLYNVPWGMYKSLMYIKERYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLITKK 504
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BLT5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542787.1}))
HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 385/486 (79.22%), Postives = 432/486 (88.89%), Query Frame = 0
Match: A0A5J5BLT5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542787.1}))
HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 385/486 (79.22%), Postives = 432/486 (88.89%), Query Frame = 0
Query: 28 SPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPP--GYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSR-KH 509
S ++ D GGLSR+SFPK F++GTATSAYQVEG A +DGRG SIWDVFL+ PGLEVNN++GEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYY+RLINYML++GITPYANLNHYDLPQALQ+RY GWL +VVKDFADYADFCFK +GDRVKNW TFNEPRVVAALGYD+G+FAP RCS+ +GNCTAG+S TEPY+ AHNLILCHA+AVQRYR KYQK +KGRIGILLDFVWYEPLTR K+D YAAQRARDFH+G F+HP+VYGEYP+TMQ IV DRLPKFTKEEV +VKGS D +GINQYT +YM + K+ P GYQ DW GF YE+ GVPIGP+AYSYWLY VPWGLYKA+MY+KERYGNPT+ILAENGMD PGN+T+P GL DT R+NYYRSY+ +LKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF+++L R KH
Sbjct: 26 SMKTVRFDNGGLSRESFPKGFVFGTATSAYQVEGMADKDGRGPSIWDVFLKIPGLEVNNSTGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYNRLINYMLKRGITPYANLNHYDLPQALQDRYMGWLSPKVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDDGFFAPGRCSKAFGNCTAGNSATEPYIVAHNLILCHAAAVQRYRGKYQKKEKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPLVYGEYPRTMQEIVGDRLPKFTKEEVKMVKGSMDYVGINQYTTYYM-YDPHRKTKPKDQGYQQDWNAGFAYERKGVPIGPRAYSYWLYNVPWGLYKAVMYIKERYGNPTIILAENGMDDPGNLTLPKGLHDTTRINYYRSYLTELKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLLRRNKH 510
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445J2H7 ((Beta-glucosidase 44 isoform A {ECO:0000313|EMBL:RZB92557.1}) (Beta-glucosidase 44 isoform B {ECO:0000313|EMBL:RZB92558.1}))
HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 377/501 (75.25%), Postives = 436/501 (87.03%), Query Frame = 0
Match: A0A445J2H7 ((Beta-glucosidase 44 isoform A {ECO:0000313|EMBL:RZB92557.1}) (Beta-glucosidase 44 isoform B {ECO:0000313|EMBL:RZB92558.1}))
HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 377/501 (75.25%), Postives = 436/501 (87.03%), Query Frame = 0
Query: 9 PLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
PL F + L+A AD E P++ DTGGLSRD+FPK F++GTATSAYQVEG AH+DGRG SIWDVF+++PG+ NN +GEV+VDQYHRYKEDIDLMA LNFDAYRFSISWSRIFPNGTG+VNWKGVAYY+RLINY+L+KGITPYANL HYDLP AL+ERYNG L RQVVKDFADYA+FCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ YGNCTAG+SGTEPY+ AHNLIL HA+AVQRYR KYQ+ QKGRIGILLDFVWYEPLTR K+D +AAQRARDFH+G F+HP+VYGEYPKT+QNIV +RLPKFT EEV IVKGS D +GINQYT F++ +K PGYQ DW GF Y KNGVPIGP+A SYWLY VPWG+YK+++Y+KERYGNPT+IL+ENGMD PGNVT+P GL DT R+NYY+ Y+ QLKK VD+GANV+GYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF++++++K
Sbjct: 6 PLCFFITLLIAGADAAAE--PQTVRFDTGGLSRDTFPKGFLFGTATSAYQVEGMAHKDGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMASLNFDAYRFSISWSRIFPNGTGQVNWKGVAYYNRLINYLLEKGITPYANLYHYDLPLALEERYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVAHNLILSHAAAVQRYRAKYQEKQKGRIGILLDFVWYEPLTRSKADNFAAQRARDFHIGWFIHPLVYGEYPKTIQNIVGNRLPKFTSEEVKIVKGSIDFVGINQYTTFFIYDPHQSKPKVPGYQMDWNAGFAYAKNGVPIGPRANSYWLYNVPWGMYKSLIYIKERYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLITKK 504
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BFG0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA67652.1}))
HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 389/515 (75.53%), Postives = 442/515 (85.83%), Query Frame = 0
Match: A0A5B7BFG0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA67652.1}))
HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 389/515 (75.53%), Postives = 442/515 (85.83%), Query Frame = 0
Query: 5 KMRWPLLFLVLYLLAL------ADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPP--GYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSR-KH 509
KMR L F +L L + ++ + S ++ DTGGLSR+ FPK F++GTATSAYQVEG A +DGRG SIWDVFL+ PGLE+NN+SG +TVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFP+GTGKVNWKGVAYY+RLINYML++GITPYANLNHYDLPQALQ+RY GWL +VVKDFADYADFCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ +GNCTAG+S TEPY+ AHNLILCHA+AVQRYR KYQ+ QKGRIGILLDFVWYEP TR K+D YAAQRARDFH+G F+HPIVYGEYP+TMQ IV DRLPKFTKEEV +VKGS D +GINQYTA+YM + K+ P GYQ DW VGF Y++ GVPIGP+AYSYWLY VPWGLYKA+MY+KE YGNPT+ILAENGMD PGN+T+P GL DT R+NYYRSY+ +LKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGI +VDF TLKR PKMSAYWF+++L R KH
Sbjct: 47 KMRTRLQFSLLAFLIIQCVANASEYGKDASMKTVRFDTGGLSREGFPKGFVFGTATSAYQVEGMADKDGRGPSIWDVFLKIPGLEINNSSGALTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPDGTGKVNWKGVAYYNRLINYMLKRGITPYANLNHYDLPQALQDRYMGWLSHKVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTAGNSATEPYIVAHNLILCHAAAVQRYRGKYQEKQKGRIGILLDFVWYEPHTRSKADNYAAQRARDFHVGWFIHPIVYGEYPRTMQEIVGDRLPKFTKEEVKMVKGSMDYVGINQYTAYYM-YDPHKKTKPKDLGYQQDWNVGFAYDRKGVPIGPRAYSYWLYNVPWGLYKAVMYIKEHYGNPTIILAENGMDDPGNLTLPKGLHDTARINYYRSYLTELKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGIVYVDFATLKRYPKMSAYWFKQLLGRNKH 560
BLAST of XM_017399729.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C6TNP0 ((Uncharacterized protein {ECO:0000313|EMBL:ACU24532.1}))
HSP 1 Score: 811.987 bits (2096), Expect = 0.000e+0
Identity = 376/501 (75.05%), Postives = 434/501 (86.63%), Query Frame = 0
Match: C6TNP0 ((Uncharacterized protein {ECO:0000313|EMBL:ACU24532.1}))
HSP 1 Score: 811.987 bits (2096), Expect = 0.000e+0
Identity = 376/501 (75.05%), Postives = 434/501 (86.63%), Query Frame = 0
Query: 9 PLLFLVLYLLALADGQLEFSPESTELDTGGLSRDSFPKDFIYGTATSAYQVEGAAHQDGRGDSIWDVFLRQPGLEVNNASGEVTVDQYHRYKEDIDLMAKLNFDAYRFSISWSRIFPNGTGKVNWKGVAYYDRLINYMLQKGITPYANLNHYDLPQALQERYNGWLGRQVVKDFADYADFCFKMYGDRVKNWFTFNEPRVVAALGYDNGYFAPSRCSQPYGNCTAGDSGTEPYVAAHNLILCHASAVQRYREKYQKSQKGRIGILLDFVWYEPLTRGKSDEYAAQRARDFHLG-FLHPIVYGEYPKTMQNIVKDRLPKFTKEEVNIVKGSADVIGINQYTAFYMQHVTVNKSMPPGYQNDWQVGFVYEKNGVPIGPKAYSYWLYEVPWGLYKAIMYVKERYGNPTMILAENGMDQPGNVTIPDGLKDTQRVNYYRSYIQQLKKTVDEGANVIGYFAWSLLDNFEWRLGYTSRFGITFVDFKTLKRTPKMSAYWFQKMLSRK 508
PL F + L+A AD E P++ DTGGLSRD+FPK F++GTATSAYQVEG AH+DGRG SIWDVF+++PG+ NN +GEV+VDQYHRYKEDIDLMA LNFDAYRFSISWSRIFPNGTG+VNWKGVAYY+RLINY+L+KGITPYANL HYDLP AL+ERYNG L RQVVKDFADYA+FCFK +GDRVKNW TFNEPRVVAALGYDNG+FAP RCS+ YGNCTAG+SGTEPY+ AHNLIL HA+AVQRYR KYQ+ QKGRIGILLDFVWYEP TR K+D +AAQRARDFH+G F+HP+VYGEYPKT+QNIV +RLPKFT EEV IVKGS D +GINQYT F++ +K PGYQ DW GF Y KNGVPIGP+A SYWLY V WG+YK++MY+KERYGNPT+IL+ENGMD PGNVT+P GL DT R+NYY+ Y+ QLKK VD+GANV+GYFAWSLLDNFEWRLGYTSRFGI +VDFKTLKR PKMSAYWF++++++K
Sbjct: 6 PLCFFITLLIAGADAAAE--PQTVRFDTGGLSRDTFPKGFLFGTATSAYQVEGMAHKDGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMASLNFDAYRFSISWSRIFPNGTGQVNWKGVAYYNRLINYLLEKGITPYANLYHYDLPLALEERYNGLLSRQVVKDFADYAEFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYIVAHNLILSHAAAVQRYRAKYQEKQKGRIGILLDFVWYEPPTRSKADNFAAQRARDFHIGWFIHPLVYGEYPKTIQNIVGNRLPKFTSEEVKIVKGSIDFVGINQYTTFFIYDPHQSKPKVPGYQMDWNAGFAYAKNGVPIGPRANSYWLYNVLWGMYKSLMYIKERYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRYPKMSAYWFKQLITKK 504
| Match Name | Stats | Description |
|---|---|---|
| A0A3Q7FW21 | E-Value: 0.000e+0, PID: 79.67 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A0V0IDM7 | E-Value: 0.000e+0, PID: 77.69 | (Putative beta-glucosidase 44-like {ECO:0000313|EM... [more] |
| Q8VWL8 | E-Value: 0.000e+0, PID: 79.25 | (Beta-mannosidase enzyme {ECO:0000313|EMBL:AAL3771... [more] |
| A0A6N2C5L0 | E-Value: 0.000e+0, PID: 79.25 | (Uncharacterized protein {ECO:0000313|EMBL:TMW9997... [more] |
| M1A468 | E-Value: 0.000e+0, PID: 77.48 | (Beta-mannosidase {ECO:0000313|EnsemblPlants:PGSC0... [more] |
| A0A0R0IIZ3 | E-Value: 0.000e+0, PID: 75.45 | (Uncharacterized protein {ECO:0000313|EMBL:KRH3910... [more] |
| A0A5J5BLT5 | E-Value: 0.000e+0, PID: 79.22 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| A0A445J2H7 | E-Value: 0.000e+0, PID: 75.25 | (Beta-glucosidase 44 isoform A {ECO:0000313|EMBL:R... [more] |
| A0A5B7BFG0 | E-Value: 0.000e+0, PID: 75.53 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6765... [more] |
| C6TNP0 | E-Value: 0.000e+0, PID: 75.05 | (Uncharacterized protein {ECO:0000313|EMBL:ACU2453... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |