XM_017402428.1

Resource Type: 
Polypeptide
Name: 
XM_017402428.1
Identifier: 
XM_017402428.1-protein
Sequence: 
MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANP
VRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAG
MKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRT
DELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVD
IQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPE
SKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGIT
PEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASL
LLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR
Sequence Length: 
398
Sequence Checksum: 
8da7e744badd935b388011fb1287c81d
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017402428.1, derives from mRNA, XM_017402428.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEY1 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 823.157 bits (2125), Expect = 0.000e+0
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0
 
Query:    1 MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR 398
            MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR
Sbjct:    1 MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR 398    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9SSU8 (Phytoene synthase, chloroplastic (2.5.1.32) (Precursor))

HSP 1 Score: 823.157 bits (2125), Expect = 0.000e+0
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0
 
Query:    1 MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR 398
            MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR
Sbjct:    1 MACNFAVRVIYYPKEIHGVSVLNTNRSRKSRFSCRVMKLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTVR 398    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C5I849 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 298/393 (75.83%), Postives = 336/393 (85.50%), Query Frame = 0
 
Query:   13 PKEIHGVSVLN----TNRSRKSRFSCRVMKLSTGV---SAVAANPVRTSEERVYEVVLKQAALVREEKR-SSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            PKE +  S+L+        ++S+F C  +  S G+   S   A+P R+SEERVYEVVLKQAALVRE++R   + L  D +  GS           GM +W+LLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNAS+ITPKALDRWEKRL DLF+G+PYDMYDAAL+DTV+ YPVDIQPFKDM++GMR+DL+KSRYQ FDELYLYCYYVAGTVGLMSVPVMGIAPESKA+TESVY+AALALGIANQLTNILRDVGEDARRGRIYLPQ+EL  AG++ + IF+GKVTDKW+SFMKGQIKRARMFFDEAEKGVAEL+SASRWPVWASLLLY+QILDAIEAN YDNFTKRAYVGKAKKLVSLP+AY RA+  PS +
Sbjct:   11 PKE-NATSLLSLMPRIGSPKRSKF-CSRLSFSPGIIAYSGAVAHPPRSSEERVYEVVLKQAALVREQRRPKEKALDFDQRIEGSD----------GMTNWDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASYITPKALDRWEKRLTDLFEGRPYDMYDAALSDTVTKYPVDIQPFKDMVEGMRLDLRKSRYQNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDDDIFRGKVTDKWQSFMKGQIKRARMFFDEAEKGVAELNSASRWPVWASLLLYRQILDAIEANGYDNFTKRAYVGKAKKLVSLPIAYGRAIIGPSKL 391    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3KHV9 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 292/375 (77.87%), Postives = 330/375 (88.00%), Query Frame = 0
 
Query:   26 RSRKSRFSCRVMKLSTGVSAVA---ANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            + R SR  C  +K ST VSA++   ANP R+SEE+VYEVVLKQAALV+E+++      LD +R        +EN DA +  W+LLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITP+ALDRWEKRL+DL++G+PYDM+DAAL+DTVS YPVDIQPFKDM++GMR+DL+KSRY TFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVY+AALALGIANQLTNILRDVGEDARRGRIYLPQ+EL  AG++ E IF+G+VTDKWRSFMK QIKRARMFFDEAEKGV+EL++ASRWPVWASLLLY+QILDAIEANDY+NFTKRAYVGKAKK  SLP+AY RAL   S +
Sbjct:   29 QKRSSRL-CSRIKFSTKVSAISSAVANPARSSEEKVYEVVLKQAALVKEQRKKK---ALDLERA-------AENSDA-LTDWDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPRALDRWEKRLDDLYEGRPYDMFDAALSDTVSKYPVDIQPFKDMVEGMRLDLRKSRYNTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELARAGLSDEDIFRGQVTDKWRSFMKDQIKRARMFFDEAEKGVSELNAASRWPVWASLLLYRQILDAIEANDYNNFTKRAYVGKAKKFASLPVAYGRALLGTSKL 391    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DM08 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 597.045 bits (1538), Expect = 0.000e+0
Identity = 292/380 (76.84%), Postives = 331/380 (87.11%), Query Frame = 0
 
Query:   21 VLNTNRSRKSRFSCRVMKLSTGVSAVA---ANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            +  + + ++SR  C  +K +TGVSA +   ANP R+SEE+VYEVVLKQAALV+E+++      LD KRT       +E D  GM  W+LLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNA HITP+ALDRWEKRL+DLF+G+PYDM+DAAL+DTVS YPVDIQPFKDMI+GMR+DL+KSRY+ FDELYLYCYYVAGTVGLMSVPVMGIAPESKA+TESVY+AALALGIANQLTNILRDVGEDARRGRIYLPQ+EL  AG++ + IF G+VTDKWRSFMK QIKRARMFFDEAEKGVAEL++ASRWPVWASLLLY+QILDAIEANDY+NFTKRAYVGKAKK  SLP+AY RAL   S +
Sbjct:   22 IPKSGKQKRSRL-CPTLKFATGVSAFSSAVANPARSSEEKVYEVVLKQAALVKEQRQKK---ALDLKRT-------AETD--GMTDWDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNAPHITPRALDRWEKRLDDLFEGRPYDMFDAALSDTVSKYPVDIQPFKDMIEGMRLDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELARAGLSDDDIFCGQVTDKWRSFMKDQIKRARMFFDEAEKGVAELNAASRWPVWASLLLYRQILDAIEANDYNNFTKRAYVGKAKKFASLPVAYGRALMGTSKL 388    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3KYA0 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 292/374 (78.07%), Postives = 327/374 (87.43%), Query Frame = 0
 
Query:   25 NRSRKSRFSCRVMKLSTGVSAVA---ANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPS 395
             + ++S   C  +KLS  VSA +   ANP R+SEE+VYEVVLKQAALV+E+ R  + L LD           +EN DA +  W+LLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITP+ALDRWEKRL+DL++G+PYDM+DAAL+DTVS YPVDIQPFKDMI+GMR+DL+KSRY TFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVY+AALALGIANQLTNILRDVGEDARRGRIYLPQ+EL  AG++ E IF+G+VTDKWRSFMK QIKRARMFFDEAEKGV+EL++ASRWPVWASLLLY+QILDAIEANDY+NFTKRAYVGKAKK  SLP+AY RAL   S
Sbjct:   27 GKQKRSSSLCSRIKLSAKVSAFSSAVANPARSSEEKVYEVVLKQAALVKEQ-RKKKALDLDKA---------AENSDA-LTDWDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPRALDRWEKRLDDLYEGRPYDMFDAALSDTVSKYPVDIQPFKDMIEGMRLDLRKSRYNTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELARAGLSDEDIFRGQVTDKWRSFMKDQIKRARMFFDEAEKGVSELNAASRWPVWASLLLYRQILDAIEANDYNNFTKRAYVGKAKKFASLPVAYGRALLGTS 389    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZN56 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 287/378 (75.93%), Postives = 326/378 (86.24%), Query Frame = 0
 
Query:   23 NTNRSRKSRFSCRVMKLSTGV---SAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            N   S++S+  C  +  STG+   S   ANP R+SEE+VYEVVLKQAALVRE+K          +  G+   +K   +  G+ + +LLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRA+WAIYVWCRRTDELVDGPNASHITPKALDRWEKRL+DLF+G+PYDMYDAAL+ TVS YPVDIQPF+DMI+GMR+DL+KSRY  FDELYLYCYYVAGTVGLMSVPVMGI+PESKA+TESVY+AALALGIANQLTNILRDVGEDARRGRIYLPQ+EL  AG++ + IF+G VT+KWR+FMKGQIKRARMFFDEAEKGVAEL+ ASRWPVWASLLLY+QILDAIEANDYDNFTKRAYVGKAKKL+SLP+AY RAL A S +
Sbjct:   25 NNGISKRSKMCCSKLSFSTGIFAYSGAVANPSRSSEEKVYEVVLKQAALVREQK--------GNRDKGALDLNKPNIETDGLTNRDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLSDLFEGRPYDMYDAALSHTVSKYPVDIQPFRDMIEGMRLDLRKSRYMNFDELYLYCYYVAGTVGLMSVPVMGISPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELARAGLSDDDIFRGNVTEKWRTFMKGQIKRARMFFDEAEKGVAELNEASRWPVWASLLLYRQILDAIEANDYDNFTKRAYVGKAKKLLSLPVAYGRALMASSKL 394    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6S0E0 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 292/392 (74.49%), Postives = 332/392 (84.69%), Query Frame = 0
 
Query:   13 PKEIHGVSVLN----TNRSRKSRFSCRVMKLSTGV---SAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            PKE +  S+L         ++S+F C  +  S G+   S   A+P R+SEERVYEVVLKQAALVRE++R          +  +  F +      GM +W+LLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNAS+ITPKALDRWEKRL DLFDG+PYDMYDAAL+DTV+ YPVDIQPFKDM++GMR+DL+KSRYQ FDELYLYCYYVAGTVGLMSVPVMGI+PESKA+TE+VY+AALALGIANQLTNILRDVGEDARRGR+YLPQ+EL  AG++ + IF+GKVTDKW+SFMK QIKRARMFFDEAEKGVAEL+SASRWPVWASLLLY+QILDAIEAN YDNFTKRAYVGKAKKLVSLP+AY RA+  PS +
Sbjct:   11 PKE-NATSLLGLMPRIGNPKRSKF-CSRLSFSPGILAYSGAVAHPSRSSEERVYEVVLKQAALVREQRRP---------KEKALDFGEGVESSDGMTNWDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASYITPKALDRWEKRLTDLFDGRPYDMYDAALSDTVAKYPVDIQPFKDMVEGMRLDLRKSRYQNFDELYLYCYYVAGTVGLMSVPVMGISPESKASTETVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFRGKVTDKWQSFMKDQIKRARMFFDEAEKGVAELNSASRWPVWASLLLYRQILDAIEANGYDNFTKRAYVGKAKKLVSLPIAYGRAIIGPSKL 391    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5TC03 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 290/374 (77.54%), Postives = 328/374 (87.70%), Query Frame = 0
 
Query:   28 RKSRFSCRVMKLSTGV---SAVAANPVRTSEERVYEVVLKQAALVREEKR-SSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            R+S+  C  +  STGV   S   A+PVR+SEE VYEVVLKQAALVRE+ R   R L LD         ++ E D  G+ +W+LLN+AYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNAS+ITPKALDRWEKRL DLF+G+PYDMYDAAL+DTVS YPVDIQPFKDM++GMR+DL+KSRYQ FDELYLYCYYVAGTVGLMSVPVMGI+PESKA+TE+VY+AALALGIANQLTNILRDVGEDARRGR+YLPQ+EL  AG++ + IF+GKVT+KW+ FMKGQIKRARMFFDEAEKGV+EL+SASRWPVWASLLLY+QILDAIEAN YDNFTKRAYVGKAKKLVSLP+AY RA+  PS +
Sbjct:   29 RRSKL-CSRLTFSTGVLAYSGAVAHPVRSSEEMVYEVVLKQAALVREQSRVKERALDLD---------ERIETD--GLSNWDLLNQAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASYITPKALDRWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDMVEGMRLDLRKSRYQNFDELYLYCYYVAGTVGLMSVPVMGISPESKASTETVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFRGKVTEKWKMFMKGQIKRARMFFDEAEKGVSELNSASRWPVWASLLLYRQILDAIEANGYDNFTKRAYVGKAKKLVSLPVAYGRAVIGPSKL 390    
BLAST of XM_017402428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FP74 (15-cis-phytoene synthase {ECO:0000256|ARBA:ARBA00012396} (2.5.1.32 {ECO:0000256|ARBA:ARBA00012396}))

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 290/374 (77.54%), Postives = 327/374 (87.43%), Query Frame = 0
 
Query:   28 RKSRFSCRVMKLSTGV---SAVAANPVRTSEERVYEVVLKQAALVREEKR-SSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDMIDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397
            R+S+  C  +  STGV   S   A+P+R+SEE VYEVVLKQAALVRE+ R   R L LD         ++ E D  G+ +W+LLN+AYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNAS+ITPKALDRWEKRL DLF+G+PYDMYDAAL+DTVS YPVDIQPFKDM++GMR+DL KSRYQ FDELYLYCYYVAGTVGLMSVPVMGI+PESKA+TE+VY+AALALGIANQLTNILRDVGEDARRGR+YLPQ+EL  AG++ + IF+GKVTDKW+ FMKGQIKRARMFFDEAEKGV+EL+SASRWPVWASLLLY+QILDAIEAN YDNFTKRAYVGKAKKLVSLP+AY RA+  PS +
Sbjct:   28 RRSKL-CSRLTFSTGVLAYSGAVAHPIRSSEEMVYEVVLKQAALVREQSRVKERALELD---------ERIETD--GLSNWDLLNQAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASYITPKALDRWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDMVEGMRLDLIKSRYQNFDELYLYCYYVAGTVGLMSVPVMGISPESKASTETVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFRGKVTDKWKMFMKGQIKRARMFFDEAEKGVSELNSASRWPVWASLLLYRQILDAIEANGYDNFTKRAYVGKAKKLVSLPVAYGRAVIGPSKL 389    
Match NameStatsDescription
Q2VEY1E-Value: 0.000e+0, PID: 100.0015-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
Q9SSU8E-Value: 0.000e+0, PID: 100.00Phytoene synthase, chloroplastic (2.5.1.32) (Precu... [more]
C5I849E-Value: 0.000e+0, PID: 75.8315-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A1R3KHV9E-Value: 0.000e+0, PID: 77.8715-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A061DM08E-Value: 0.000e+0, PID: 76.8415-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A1R3KYA0E-Value: 0.000e+0, PID: 78.0715-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A6P3ZN56E-Value: 0.000e+0, PID: 75.9315-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A2P6S0E0E-Value: 0.000e+0, PID: 74.4915-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A6P5TC03E-Value: 0.000e+0, PID: 77.5415-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
A0A5E4FP74E-Value: 0.000e+0, PID: 77.5415-cis-phytoene synthase {ECO:0000256|ARBA:ARBA000... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content