Resource Type:
Polypeptide
Name:
XM_017402557.1
Identifier:
XM_017402557.1-protein
Sequence:
MGVTEHEKSEQVERIKDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASV
PHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGY
HWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKG
LFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYA
IKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYI
TYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMV
KEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEG
DEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKL
SASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKK
KLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDEST
GKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL
Sequence Length:
547
Sequence Checksum:
b2a23112f37bbac15833fdf0717a7aa1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017402557.1, derives from mRNA, XM_017402557.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW7 ((Putative carotenoid cleavage dioxygenase {ECO:0000313|EMBL:ABB52081.1}))
HSP 1 Score: 1131.7 bits (2926), Expect = 0.000e+0
Identity = 546/547 (99.82%), Postives = 546/547 (99.82%), Query Frame = 0
Match: Q2VEW7 ((Putative carotenoid cleavage dioxygenase {ECO:0000313|EMBL:ABB52081.1}))
HSP 1 Score: 1131.7 bits (2926), Expect = 0.000e+0
Identity = 546/547 (99.82%), Postives = 546/547 (99.82%), Query Frame = 0
Query: 1 MGVTEHEKSEQVERIKDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
MGVTEHEKSEQVERIKDVVIVNPKPSKG TSKAIDWIESLIVKLMYDASVPHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 1 MGVTEHEKSEQVERIKDVVIVNPKPSKGLTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZQG1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520239.1}))
HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 467/536 (87.13%), Postives = 504/536 (94.03%), Query Frame = 0
Match: A0A5J4ZQG1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520239.1}))
HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 467/536 (87.13%), Postives = 504/536 (94.03%), Query Frame = 0
Query: 13 ERIKD-VVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
ER++D VV VNPKPSKG TSKAIDW+E LIVKLMYD+S PHH+L+GNFAPVDETPP +DL + G +P+CLNGEFVRVGPNPKF+PVAGYHWFDGDGMIHG+RIKDGKATYVSRYVRTSRLKQEE FGG+KFMK+GDLKGLFGLLMVNMQMLR KL VLD+SYG GT NTA+IYHHG+LLALSEADKPYA+KVLEDGDLQTLG+LDYDKRL HSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVM+DPVPIT++DPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFD TKKARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLE+PDLDMVNG +KEKLENF N+LYEMRFNMK+GLASQK+LSASAVDFPR+NESYTGRKQR+VY T LDSIAKVTGI+KFDLH EP+ GK KLEVGGN+QGIFDLG GRFGSEAIFVPR+PG TSEEDDGYLI F HDE TGKSA +IDAKTMS DPVA+VELPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 6 ERMEDGVVAVNPKPSKGLTSKAIDWLEKLIVKLMYDSSQPHHYLSGNFAPVDETPPCKDLQIKGYLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGIRIKDGKATYVSRYVRTSRLKQEEYFGGSKFMKVGDLKGLFGLLMVNMQMLRAKLKVLDVSYGTGTGNTALIYHHGKLLALSEADKPYALKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMHDPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLEDPDLDMVNGVVKEKLENFKNQLYEMRFNMKTGLASQKELSASAVDFPRVNESYTGRKQRFVYGTILDSIAKVTGIIKFDLHAEPQTGKTKLEVGGNVQGIFDLGAGRFGSEAIFVPREPGITSEEDDGYLIFFGHDEKTGKSAVTVIDAKTMSADPVAIVELPHRVPYGFHAFFVTEEQLQEQAKL 541
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C3Z7 ((Putative carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:MPA75404.1}))
HSP 1 Score: 989.564 bits (2557), Expect = 0.000e+0
Identity = 465/530 (87.74%), Postives = 499/530 (94.15%), Query Frame = 0
Match: A0A5B7C3Z7 ((Putative carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:MPA75404.1}))
HSP 1 Score: 989.564 bits (2557), Expect = 0.000e+0
Identity = 465/530 (87.74%), Postives = 499/530 (94.15%), Query Frame = 0
Query: 18 VVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
VV+VNPKP+KG TSKAIDW+E LIVKLMYD+S PHH+L+GNFAPVDETPP +DL + G +P+CL+GEFVRVGPNPKFSPVAGYHWFDGDGM+HG+RIKDGKATYVSRYVRTSRLKQEE FGGAKFMKIGDLKGLFGLLMVNMQMLR KL VLD+SYG T NTA+IYHHG+LLALSEADKPY +KVLEDGDLQTLG+LDYDKRL HSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVM+DPVPIT++DPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFD TKKARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEEGDEVVL+TCRLENPDLDMVNG +KEKLENF N+LYEMRFNMK+GLASQK+LSASAVDFPR+NESYTGRKQR+VY T LDSIAKVTGI+KFDLH EPE GK KLEVGGN+QGIFDLG GRFGSEAIFVPR+PG TSEEDDGYLI F HDE TGKSA N+IDAKTMS DPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 5 VVVVNPKPNKGLTSKAIDWLEKLIVKLMYDSSQPHHYLSGNFAPVDETPPCKDLHIKGYLPDCLSGEFVRVGPNPKFSPVAGYHWFDGDGMVHGIRIKDGKATYVSRYVRTSRLKQEEYFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGTATGNTALIYHHGKLLALSEADKPYVLKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMHDPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEGDEVVLMTCRLENPDLDMVNGIVKEKLENFKNQLYEMRFNMKTGLASQKELSASAVDFPRVNESYTGRKQRFVYGTILDSIAKVTGIIKFDLHAEPETGKTKLEVGGNVQGIFDLGAGRFGSEAIFVPREPGITSEEDDGYLIFFAHDEKTGKSAVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 534
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5WAD3 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4298549.1}))
HSP 1 Score: 979.163 bits (2530), Expect = 0.000e+0
Identity = 464/548 (84.67%), Postives = 504/548 (91.97%), Query Frame = 0
Match: A0A6J5WAD3 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4298549.1}))
HSP 1 Score: 979.163 bits (2530), Expect = 0.000e+0
Identity = 464/548 (84.67%), Postives = 504/548 (91.97%), Query Frame = 0
Query: 1 MGVTEHEKSEQVERIKDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPV-DETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
M E EK +Q++ VV+ NPKP+KGF SK +D IE+LIVKLMYD S PHH+LAGNFAPV DETPP +LPVIGS+PECLNGEFVRVGPNPKF+PVAGYHWFDGDGM+HG+RIKDGKA YVSRYVRTSRLKQEE FGGAKFMKIGDLKGLFGLLMVNMQ+LR KL VLDMSYGNGT NTA+IYHHG+LLALSE DKPY +KVLEDGDLQT+GLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDG M+DP+PIT+ADPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFD TKKARFGVLPRYAK++LLI+WFELPNCFIFHNANAWEE DE+VLITCRLENPDLDMVNG +KEKLENF NELYEMRFN+K+GLASQKKLS SAVDFPR+NESYTGRKQRYVY T LDSIAKVTG+VKFDLH PE+GK K+EVGGN+QG++DLG GRFGSEAIFVPR PG TSEEDDGYLI F+HDE TGKS+ ++IDAKTMS DPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 1 MAEVEDEKKQQIKS-SGVVVPNPKPNKGFASKVVDLIENLIVKLMYDPSQPHHYLAGNFAPVLDETPPTNNLPVIGSLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMVHGMRIKDGKAMYVSRYVRTSRLKQEEYFGGAKFMKIGDLKGLFGLLMVNMQILRAKLKVLDMSYGNGTGNTALIYHHGKLLALSEGDKPYVLKVLEDGDLQTVGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGFMHDPIPITVADPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDDLLIRWFELPNCFIFHNANAWEEEDEIVLITCRLENPDLDMVNGPVKEKLENFKNELYEMRFNLKTGLASQKKLSESAVDFPRVNESYTGRKQRYVYGTLLDSIAKVTGVVKFDLHAAPELGKTKIEVGGNVQGLYDLGPGRFGSEAIFVPRVPGVTSEEDDGYLIFFVHDEKTGKSSIHVIDAKTMSSDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5T2Q2 ((carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_021820758.1}))
HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 464/548 (84.67%), Postives = 506/548 (92.34%), Query Frame = 0
Match: A0A6P5T2Q2 ((carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_021820758.1}))
HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 464/548 (84.67%), Postives = 506/548 (92.34%), Query Frame = 0
Query: 1 MGVTEHEKSEQVERIKDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPV-DETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
M E EK +Q++ +V+ NP P+KGF SK +D IE+LIVKLMYD+S PHH+LAGNFAPV DETPP +LPVIGS+PECLNGEFVRVGPNPKF+PVAGYHWFDGDGM+HG+RIKDGKATYVSRYVRTSRLKQEE FGGAKFMKIGDLKGLFGLLMVNMQ+LR KL VLDMSYGNGT NTA+IYHHG+LLALSEADKPY +KVLEDGDLQT+GLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISK+G M+DP+PIT+ADPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFD TKKARFGVLPRYAK+ELLI+WFELPNCFIFHNANAWEE DE+VLITCRLEN DLDMVNGS+KEKLENF NELYEMRFN+K+GLASQKKLS SAVDFPR+NESYTGRKQRYVY T LDSIAKVTG+VKFDLH PE+GK K+EVGGN+QG++DLG GRFGSEAIFVPR PG TSEEDDGYLI F+HDE TGKS+ ++IDAKTMS DPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 1 MAEVEDEKKQQIKS-SGIVVPNPIPNKGFASKFVDLIENLIVKLMYDSSQPHHYLAGNFAPVLDETPPTNNLPVIGSLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMVHGMRIKDGKATYVSRYVRTSRLKQEEYFGGAKFMKIGDLKGLFGLLMVNMQILRAKLKVLDMSYGNGTGNTALIYHHGKLLALSEADKPYVLKVLEDGDLQTVGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKEGFMHDPIPITVADPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDELLIRWFELPNCFIFHNANAWEEEDEIVLITCRLENLDLDMVNGSVKEKLENFKNELYEMRFNLKTGLASQKKLSESAVDFPRVNESYTGRKQRYVYGTLLDSIAKVTGVVKFDLHAAPELGKTKIEVGGNVQGLYDLGPGRFGSEAIFVPRVPGVTSEEDDGYLIFFVHDEKTGKSSIHVIDAKTMSSDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4G3U2 ((Full=PREDICTED: carotenoid {ECO:0000313|EMBL:VVA34282.1}))
HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 464/548 (84.67%), Postives = 506/548 (92.34%), Query Frame = 0
Match: A0A5E4G3U2 ((Full=PREDICTED: carotenoid {ECO:0000313|EMBL:VVA34282.1}))
HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 464/548 (84.67%), Postives = 506/548 (92.34%), Query Frame = 0
Query: 1 MGVTEHEKSEQVERIKDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPV-DETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
M E E+ +Q++ I +V+ NPKP+KGF SK +D IE+LIVKLMYD S PHH+LAGNFAPV DETPP +LPVIGS+PECLNGEFVRVGPNPKF+PVAGYHWFDGDGM+HG+RIKDGKATYVSRYVRTSRLKQEE FGGAKFM+IGDLKGLFGLLMVNMQ+LR KL VLDMSYGNGT NTA+IYHHG+LLALSEADKPY +KVLEDGDLQT+GLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDG M+DP+PIT+ADPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFD TKKARFGVLPRYAK+ELLI+WFELPNCFIFHNANAWEE DE+VLITCRLEN DLDMVNG +KEKLENF NELYEMRFN+K+GLASQKKLS SAVDFPR+NESYTGRKQRYVY T LDSIAKVTG+VKFDLH PE+GK K+EVGGN+QG++DLG GRFGSEAIFVPR PG TSEEDDGYLI F+HDE TGKS+ ++IDAKTMS DPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 1 MAEIEDEEKQQIKSI-GIVVPNPKPNKGFASKVLDLIENLIVKLMYDPSQPHHYLAGNFAPVLDETPPTNNLPVIGSLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMVHGMRIKDGKATYVSRYVRTSRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQILRAKLKVLDMSYGNGTGNTALIYHHGKLLALSEADKPYVLKVLEDGDLQTVGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGFMHDPIPITVADPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDELLIRWFELPNCFIFHNANAWEEEDEIVLITCRLENLDLDMVNGPVKEKLENFKNELYEMRFNLKTGLASQKKLSESAVDFPRVNESYTGRKQRYVYGTLLDSIAKVTGVVKFDLHAAPELGKPKIEVGGNVQGLYDLGPGRFGSEAIFVPRVPGVTSEEDDGYLIFFVHDEKTGKSSIHVIDAKTMSSDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QKQ9 ((Carotenoid 9,10(9',10')-cleavage dioxygenase {ECO:0000313|EMBL:PSS09988.1}))
HSP 1 Score: 977.622 bits (2526), Expect = 0.000e+0
Identity = 455/525 (86.67%), Postives = 496/525 (94.48%), Query Frame = 0
Match: A0A2R6QKQ9 ((Carotenoid 9,10(9',10')-cleavage dioxygenase {ECO:0000313|EMBL:PSS09988.1}))
HSP 1 Score: 977.622 bits (2526), Expect = 0.000e+0
Identity = 455/525 (86.67%), Postives = 496/525 (94.48%), Query Frame = 0
Query: 23 PKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPVDETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
P PSKG TSKAIDW+E LIVKLMYD+S PH WL+GNFAPV ETPP +DLPVIG +PECLNGEFVRVGPNPKF+PVAGYHWFDGDGMIHGLRIKDG+ATY+SRYV+TSRLKQEE FGG+KFMKIGDLKGLFGLLMVNMQMLR KL VLD+SYGNGT NTA++YHHG+LLALSEADKPY +KVLEDGDLQT+GLLDYDKRL HSFTAHPKVDPFTGEMFTFGYSHTPPYITYRV+SKDG M+DPVPIT++DPIMMHDFAITENYAIIMDLPLYF+PKEMVK+KKLIFTFD TKKARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEEG+EVVLITCRL+NPDLDMV+G++KEKLENFNNELYEMRFNM +GLASQKKLSASAVDFPR+NESYTGRKQR+VY T LDSIAKVTGI+KFDLH EPE GKKKLE+GGN+QGIFDLG RFGSEA+FVPR+PG TSEEDDGYLI F+HDE+ GKSA N+IDAKTMS +PVAV+ELP RVPYGFHAFFVTEEQLQEQAKL
Sbjct: 19 PNPSKGLTSKAIDWLEKLIVKLMYDSSQPHQWLSGNFAPVCETPPCKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGRATYLSRYVKTSRLKQEEYFGGSKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTGNTALVYHHGKLLALSEADKPYVLKVLEDGDLQTIGLLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVVSKDGFMHDPVPITISDPIMMHDFAITENYAIIMDLPLYFRPKEMVKDKKLIFTFDETKKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEGEEVVLITCRLQNPDLDMVSGTVKEKLENFNNELYEMRFNMITGLASQKKLSASAVDFPRVNESYTGRKQRFVYGTILDSIAKVTGIIKFDLHAEPESGKKKLEIGGNVQGIFDLGPSRFGSEAVFVPREPGITSEEDDGYLICFVHDEANGKSAVNVIDAKTMSANPVAVIELPTRVPYGFHAFFVTEEQLQEQAKL 543
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5AW79 ((Carotenoid cleavage dioxygenase {ECO:0000313|EMBL:PON40751.1}))
HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 458/533 (85.93%), Postives = 503/533 (94.37%), Query Frame = 0
Match: A0A2P5AW79 ((Carotenoid cleavage dioxygenase {ECO:0000313|EMBL:PON40751.1}))
HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 458/533 (85.93%), Postives = 503/533 (94.37%), Query Frame = 0
Query: 16 KDVVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPV-DETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
K +V VNPKP+KG TSK +DW ES+IVK MYD+S PHH+L+GNFAPV DETPP +DLPVIGS+PECLNGEFVRVGPNPKF+PVAGYHWFDGDGMIHGLRIKDGKATYVSRY+RTSR+KQEE FGGAKFMKIGDLKGLFGLLMVNMQ+LR KL VLD+S+GNGTANTA++YHHG+LLALSEADKPYA+KVLEDGDLQTLG+LDYDKRL HSFTAHPKVDPFTGEMFTFGY+HTPPYITYRVISKDG M+DPVPIT+ DPIMMHDFAITENYAI MDLPL F+PKEMVKEKKLIF+FDAT+KARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEE DEVVLITCRLENPDLDMV+G++KEKLENF+NELYEMRFN+K+GLASQ+KLS SAVDFPR+NESYTGRKQRYVY T LDSIAKVTGIVKFDLH EPE GK +LEVGGN+QG++DLG GRFGSEAIFVP+ PG TSEEDDGYLI F+HDE+TGKSA ++IDAKTMS DPVAVV+LPHRVPYGFHAFFVTEEQLQEQAKL
Sbjct: 18 KGIVTVNPKPNKGLTSKLVDWFESVIVKFMYDSSQPHHYLSGNFAPVRDETPPTKDLPVIGSLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRYIRTSRIKQEEYFGGAKFMKIGDLKGLFGLLMVNMQILRAKLKVLDLSFGNGTANTALVYHHGKLLALSEADKPYALKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVPDPIMMHDFAITENYAIFMDLPLIFRPKEMVKEKKLIFSFDATRKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVSGAVKEKLENFSNELYEMRFNLKTGLASQRKLSESAVDFPRVNESYTGRKQRYVYGTRLDSIAKVTGIVKFDLHAEPESGKTRLEVGGNVQGLYDLGPGRFGSEAIFVPKVPGITSEEDDGYLILFVHDENTGKSAVHVIDAKTMSSDPVAVVDLPHRVPYGFHAFFVTEEQLQEQAKL 550
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I2E7N9 ((Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:AFJ94677.1}))
HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 457/531 (86.06%), Postives = 500/531 (94.16%), Query Frame = 0
Match: I2E7N9 ((Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:AFJ94677.1}))
HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 457/531 (86.06%), Postives = 500/531 (94.16%), Query Frame = 0
Query: 18 VVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPV-DETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
V +V+PKPSKGFTSKA+DW+E LIVKLMYD+S P H+L+GNFAPV DETPP ++LPVIG +PECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGL IKDGKATYVSRYVRTSRLKQEE FGGAKFM+IGDLKGLFGLLMVNMQMLR KL +LD+SYG GT NTA+++HHG+LLALSEADKPY +KVLEDGDLQTLG+LDYDKRLTHSFTAHPKVDPFTGEMF+FGYSHTPPYITYRVISKDG M++PVPIT++DPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFDATKKARFGVLPRYAKNEL IKWFELPNCFIFHNANAWEE DEVVLITCRLENPDLD+V G +KEKLENF NELYEMRFNMK+G+ASQ+KLSAS+VDFPR+NESYTGRKQRYVY T LDSIAKVTGI+KFDLH EP+ GK KLEVGGN+QGIFDLGVGRFGSEA+FVPR+PG TSEEDDGYLI F+HDE TGKS N+IDAKTMSPDP+A+VELP+RVPYGFHAFFVTEEQL+EQAKL
Sbjct: 16 VAVVDPKPSKGFTSKAVDWLEKLIVKLMYDSSQPLHYLSGNFAPVRDETPPCKNLPVIGYLPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLHIKDGKATYVSRYVRTSRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQMLRAKLKILDVSYGTGTGNTALVFHHGKLLALSEADKPYVLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFSFGYSHTPPYITYRVISKDGFMHEPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDLVGGDVKEKLENFGNELYEMRFNMKTGIASQRKLSASSVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDTGKSKLEVGGNVQGIFDLGVGRFGSEAVFVPREPGITSEEDDGYLIFFVHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRVPYGFHAFFVTEEQLKEQAKL 546
BLAST of XM_017402557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q3T4H1 ((9,10[9',10']carotenoid cleavage dioxygenase {ECO:0000313|EMBL:AAX48772.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 457/531 (86.06%), Postives = 501/531 (94.35%), Query Frame = 0
Match: Q3T4H1 ((9,10[9',10']carotenoid cleavage dioxygenase {ECO:0000313|EMBL:AAX48772.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 457/531 (86.06%), Postives = 501/531 (94.35%), Query Frame = 0
Query: 18 VVIVNPKPSKGFTSKAIDWIESLIVKLMYDASVPHHWLAGNFAPV-DETPPARDLPVIGSIPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPYAIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 547
VV+V+PKPSKGFTSKA+DW+E LIVKLM+D+S P H+L+GNFAPV DETPP ++LPVIG +PECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGL IKDGKATYVSRYVRTSRLKQEE FGGAKFM+IGDLKGLFGLLMVNMQMLR KL +LD+SYG GT NTA+++HHG+LLALSEADKPY +KVLEDGDLQTLG+LDYDKRLTHSFTAHPKVDPFTGEMF+FGYSHTPPYITYRVISKDG M++PVPIT++DPIMMHDFAITENYAI MDLPLYF+PKEMVKEKKLIFTFDATKKARFGVLPRYAKNEL IKWFELPNCFIFHNANAWEE DEVVLITCRLENPDLD+V G +KEKLENF NELYEMRFNMK+G+ASQ+KLSAS+VDFPR+NESYTGRKQRYVY T LDSIAKVTGI+KFDLH EP+ GK KLEVGGN+QGIFDLGVGRFGSEA+FVPR+PG TSEEDDGYLI F+HDE TGKS N+IDAKTMSPDP+A+VELP+RVPYGFHAFFVTEEQL+EQAKL
Sbjct: 12 VVVVDPKPSKGFTSKAVDWLEKLIVKLMHDSSQPLHYLSGNFAPVRDETPPCKNLPVIGYLPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLHIKDGKATYVSRYVRTSRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQMLRAKLKILDVSYGTGTGNTALVFHHGKLLALSEADKPYVLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFSFGYSHTPPYITYRVISKDGFMHEPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDLVGGDVKEKLENFGNELYEMRFNMKTGIASQRKLSASSVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDTGKSKLEVGGNVQGIFDLGVGRFGSEAVFVPREPGITSEEDDGYLIFFVHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRVPYGFHAFFVTEEQLKEQAKL 542
| Match Name | Stats | Description |
|---|---|---|
| Q2VEW7 | E-Value: 0.000e+0, PID: 99.82 | (Putative carotenoid cleavage dioxygenase {ECO:000... [more] |
| A0A5J4ZQG1 | E-Value: 0.000e+0, PID: 87.13 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8520... [more] |
| A0A5B7C3Z7 | E-Value: 0.000e+0, PID: 87.74 | (Putative carotenoid cleavage dioxygenase 1 {ECO:0... [more] |
| A0A6J5WAD3 | E-Value: 0.000e+0, PID: 84.67 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4298... [more] |
| A0A6P5T2Q2 | E-Value: 0.000e+0, PID: 84.67 | (carotenoid 9,10(9',10')-cleavage dioxygenase 1 {E... [more] |
| A0A5E4G3U2 | E-Value: 0.000e+0, PID: 84.67 | (Full=PREDICTED: carotenoid {ECO:0000313|EMBL:VVA3... [more] |
| A0A2R6QKQ9 | E-Value: 0.000e+0, PID: 86.67 | (Carotenoid 9,10(9',10')-cleavage dioxygenase {ECO... [more] |
| A0A2P5AW79 | E-Value: 0.000e+0, PID: 85.93 | (Carotenoid cleavage dioxygenase {ECO:0000313|EMBL... [more] |
| I2E7N9 | E-Value: 0.000e+0, PID: 86.06 | (Carotenoid cleavage dioxygenase 1 {ECO:0000313|EM... [more] |
| Q3T4H1 | E-Value: 0.000e+0, PID: 86.06 | (9,10[9',10']carotenoid cleavage dioxygenase {ECO:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |