Resource Type:
Polypeptide
Name:
XM_017360263.1
Identifier:
XM_017360263.1-protein
Sequence:
MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNG
KLPNSTEEDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLG
APSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGG
VFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIP
ADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDV
EMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSP
IPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHE
EYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWT
FYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYP
QPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPER
WPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNF
QMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAVTAETSSLKDDSSVN
MSREAVADQKGEVSVART
Sequence Length:
618
Sequence Checksum:
d5282ebee8c021f175170e7a2a738ab7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017360263.1, derives from mRNA, XM_017360263.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059P9X5 ((Chloroplast cytochrome P450 monooxygenase 97A3 {ECO:0000313|EMBL:AFU10536.1}))
HSP 1 Score: 1267.29 bits (3278), Expect = 0.000e+0
Identity = 616/618 (99.68%), Postives = 616/618 (99.68%), Query Frame = 0
Match: A0A059P9X5 ((Chloroplast cytochrome P450 monooxygenase 97A3 {ECO:0000313|EMBL:AFU10536.1}))
HSP 1 Score: 1267.29 bits (3278), Expect = 0.000e+0
Identity = 616/618 (99.68%), Postives = 616/618 (99.68%), Query Frame = 0
Query: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTEEDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAVTAETSSLKDDSSVNMSREAVADQKGEVSVART 618
MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTEEDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETD PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAVTAETSSLKDDSSVNMSREAVADQKGEVSVART
Sbjct: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTEEDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETD--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAVTAETSSLKDDSSVNMSREAVADQKGEVSVART 616
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5HWU8 ((Protein LUTEIN DEFICIENT 5 {ECO:0000313|EMBL:KAB2629960.1}))
HSP 1 Score: 982.245 bits (2538), Expect = 0.000e+0
Identity = 480/621 (77.29%), Postives = 534/621 (85.99%), Query Frame = 0
Match: A0A5N5HWU8 ((Protein LUTEIN DEFICIENT 5 {ECO:0000313|EMBL:KAB2629960.1}))
HSP 1 Score: 982.245 bits (2538), Expect = 0.000e+0
Identity = 480/621 (77.29%), Postives = 534/621 (85.99%), Query Frame = 0
Query: 2 ATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTE---EDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR-EAVADQKGEVSVAR 617
AT L PA+ F Q+K NR PT K GS+ S I C+ SNG+ P+S + + E +++ RAELSARI+SGEFTVEKSGF SQL GL+K+G P+ VLD L W A E+YPKIPEAKGAISAI+SEAFF+PL+ELYLTYGG++RLTFGPKSFLIVSDP +AKHILR+NSKAYSKGILAEILEFVMG GLIPADGEIWR+RRRAIVPALHQKYVTAMI++FG+ATDRLC KLDAAASD EDVEMESLFSRLTLDIIGKA+FNYDFDSLTNDTGIVEAVYTVLREAEDRSV+PIP WEIPIWKDISP+ +KV +AL+LIN TLDDLIAICKRMVDEEELQFHEEYMNE D PSILHFLLASGDDVSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLS EP VM KLQ E DSVLGDR PTI+DMKKLKY TRVINESLRLYPQPPVLIRRSLEDDKLG+YPIKRNEDIFI IWNLHR P++W+DADKFNPERWPLDGPNPNETNQ F YLPFGGGPRKC+GDMFA+FE +VA++MLVRRFNFQMALGAP VKMTTGATIHTTEGL MTV++RI PP V T E + + D+ V + + +++ QKGEVS A
Sbjct: 599 ATIPLLQFVPAKTF-QAKHHSNRLRPT----KQRGSFGLSMIICASSNGREPDSADGGVKSVERLLEEKRRAELSARISSGEFTVEKSGFPSQLKSGLSKVGVPTGVLDFLFSWADAPENYPKIPEAKGAISAIQSEAFFVPLFELYLTYGGIYRLTFGPKSFLIVSDPAIAKHILRENSKAYSKGILAEILEFVMGTGLIPADGEIWRLRRRAIVPALHQKYVTAMINLFGEATDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKALFNYDFDSLTNDTGIVEAVYTVLREAEDRSVAPIPLWEIPIWKDISPRQRKVATALKLINTTLDDLIAICKRMVDEEELQFHEEYMNEQD--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSTEPGVMAKLQEEADSVLGDRFPTIDDMKKLKYATRVINESLRLYPQPPVLIRRSLEDDKLGDYPIKRNEDIFICIWNLHRSPKQWDDADKFNPERWPLDGPNPNETNQNFRYLPFGGGPRKCLGDMFATFETVVALSMLVRRFNFQMALGAPEVKMTTGATIHTTEGLKMTVSRRIKPPIVPTLEMPAFEVDTPVGVPKGDSLVSQKGEVSSAH 1212
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VBY7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY42483.1}))
HSP 1 Score: 980.319 bits (2533), Expect = 0.000e+0
Identity = 484/614 (78.83%), Postives = 533/614 (86.81%), Query Frame = 0
Match: A0A2C9VBY7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY42483.1}))
HSP 1 Score: 980.319 bits (2533), Expect = 0.000e+0
Identity = 484/614 (78.83%), Postives = 533/614 (86.81%), Query Frame = 0
Query: 16 LQSKIQHNRR---NPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTE------EDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAVTA-ETSSLKDDSSVNM-SREAVADQKGEVSVART 618
QSK+Q + NP + + NG +FS I C+ SNG+ P S+E E EEK+ RAELSARIASGEFTV+ SGF S L +GL+K+G P+E+L+ L KW+ A EDY KIPEAKGAISAIRSEAFFIPLYELYLTYGG+FRLTFGPKSFLIVSDP++AKHIL+DNSKAYSKGILAEIL+FVMGKGLIPADGE+WRVRRRAIVPALHQKYV AMI +FGQATDRLC KLDAAASD EDVEMESLFSRLTLDIIGKAVFNY+FDSLTNDTGIVEAVYTVLREAEDRSV+PIPFWEIP+WKDISP+ +KV++AL+LIN LD+LIAICKRMVDEEEL FHEEYMNE D PSILHFLLASGDDVSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLSKEPSV+ KLQ+EVDSVLGDR PTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLE+D LG+YPI R EDIFIS+WNLHR P WEDA+KFNPERWPLDGPNPNETNQ F YLPFGGGPRKCVGDMFASFE++VAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGL MTVT RI PP + +T ++ D+ VN+ S E QKGEVS A +
Sbjct: 23 FQSKLQLKKFKPINPCLSPSIQNGKCKFSVISCASSNGREPESSEGGIKGVEKILEEKR---RAELSARIASGEFTVKNSGFPSILKNGLSKIGVPNEILEFLFKWVDAGEDYSKIPEAKGAISAIRSEAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNSKAYSKGILAEILDFVMGKGLIPADGEVWRVRRRAIVPALHQKYVAAMIRLFGQATDRLCKKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYEFDSLTNDTGIVEAVYTVLREAEDRSVAPIPFWEIPVWKDISPRQRKVSAALKLINEILDELIAICKRMVDEEELNFHEEYMNEQD--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVLSKLQSEVDSVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDVLGKYPITRGEDIFISVWNLHRSPHLWEDAEKFNPERWPLDGPNPNETNQNFCYLPFGGGPRKCVGDMFASFESVVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLKMTVTPRIKPPIIPKLDTPAVTVDAPVNVSSEEPQLGQKGEVSAAHS 631
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CL37 ((protein LUTEIN DEFICIENT 5, chloroplastic-like {ECO:0000313|RefSeq:XP_016501972.1}))
HSP 1 Score: 976.852 bits (2524), Expect = 0.000e+0
Identity = 479/622 (77.01%), Postives = 540/622 (86.82%), Query Frame = 0
Match: A0A1S4CL37 ((protein LUTEIN DEFICIENT 5, chloroplastic-like {ECO:0000313|RefSeq:XP_016501972.1}))
HSP 1 Score: 976.852 bits (2524), Expect = 0.000e+0
Identity = 479/622 (77.01%), Postives = 540/622 (86.82%), Query Frame = 0
Query: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSG-IKCSVSNGKLPNSTEEDEEEEKK---KRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR-EAVADQKGEVSVA 616
MA ++ L FP ++ + +R PT++ K NG+Y + I+C+ SNG+ P S E + +K ++ RAELSARIASGEFTVE++GF S + +GL+KLG P E S+W+G DYP+IPEAKG+ISA+R+EAFFIPLYEL+LTYGG+FRLTFGPKSFLIVSDP++AKHIL+DNSKAYSKGILAEIL+FVMGKGLIPADGEIWRVRRRAIVPALHQKYV AMI +FGQATDRLC KLDAAASD EDVEMESLFSRLTLDIIGKAVFNYDFDSLT DTGIVEAVYTVLREAEDRSV+PIP WEIPIWKDISPKLKKVN+AL+LIN TLDDLIA+CKRMVDEEELQFHEEYMNE D PSILHFLLASGD+VSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLSKEPSVM KLQ+EVDSVLGDR PTIED+KKL+YTTRVINESLRLYPQPPVLIRRS+++D LG YPIKR EDIFIS+WNLHRCP WE+ADKFNPERWPLDGPNPNETNQ +SYLPFGGGPRKCVGDMFA+FE IVAVAMLVRRF+FQMALGAPPVKMTTGATIHTTEGLNMTVT+R PP V E ++L+ DSSVN S +V++Q+ E +
Sbjct: 1 MAASVPLLQFPTHSLHKTTL--SRFRPTTS-PKFNGNYGYCCTIRCNSSNGREPESVNEGVKTVEKLLEEKRRAELSARIASGEFTVEQTGFPSLVKNGLSKLGVPKEFFQFFSQWLG---DYPRIPEAKGSISAVRNEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNSKAYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMIGLFGQATDRLCKKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLTVDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDISPKLKKVNTALKLINDTLDDLIALCKRMVDEEELQFHEEYMNEKD--PSILHFLLASGDEVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVMAKLQDEVDSVLGDRFPTIEDLKKLRYTTRVINESLRLYPQPPVLIRRSIDEDVLGGYPIKRGEDIFISVWNLHRCPNHWEEADKFNPERWPLDGPNPNETNQNYSYLPFGGGPRKCVGDMFATFENIVAVAMLVRRFDFQMALGAPPVKMTTGATIHTTEGLNMTVTRRTRPPVVPNLEMATLEVDSSVNSSDINSVSNQRAETEAS 614
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YTG1 ((protein LUTEIN DEFICIENT 5, chloroplastic {ECO:0000313|RefSeq:XP_009802494.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 478/622 (76.85%), Postives = 540/622 (86.82%), Query Frame = 0
Match: A0A1U7YTG1 ((protein LUTEIN DEFICIENT 5, chloroplastic {ECO:0000313|RefSeq:XP_009802494.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 478/622 (76.85%), Postives = 540/622 (86.82%), Query Frame = 0
Query: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSG-IKCSVSNGKLPNSTEEDEEEEKK---KRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR-EAVADQKGEVSVA 616
MA ++ L FP ++ + +R PT++ K NG++ + I+CS SNG+ P S E + +K ++ RAELSARIASGEFTVE++GF S + +GL+KLG P E S+W+G DYP+IPEAKG+ISA+R+EAFFIPLYEL+LTYGG+FRLTFGPKSFLIVSDP++AKHIL+DNSKAYSKGILAEIL+FVMGKGLIPADGEIWRVRRRAIVPALHQKYV AMI +FGQATDRLC KLDAAASD EDVEMESLFSRLTLDIIGKAVFNYDFDSLT DTGIVEAVYTVLREAEDRSV+PIP WEIPIWKDISPKLKKVN+AL+LIN TLDDLIA+CKRMVDEEELQFHEEYMNE D PSILHFLLASGD+VSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLSKEPSVM KLQ+EVDSVLGDR PTIED+KKL+YTTRVINESLRLYPQPPVLIRRS+++D LG YPIKR EDIFIS+WNLHRCP WE+ADKFNPERWPLDGPNPNETNQ +SYLPFGGGPRKCVGDMFA+FE +VAVAMLVRRF+FQMALGAPPVKMTTGATIHTTEGLNMTVT+R PP V E ++L+ DSSVN S +V++Q+ E +
Sbjct: 1 MAASVPLLQFPTHSLHKTTL--SRFRPTTS-PKFNGNFGYCCTIRCSSSNGREPESVNEGVKTVEKLLEEKRRAELSARIASGEFTVEQTGFPSLVKNGLSKLGVPKEFFQFFSQWLG---DYPRIPEAKGSISAVRNEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNSKAYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMIGLFGQATDRLCKKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLTVDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDISPKLKKVNTALKLINDTLDDLIALCKRMVDEEELQFHEEYMNEKD--PSILHFLLASGDEVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVMAKLQDEVDSVLGDRFPTIEDLKKLRYTTRVINESLRLYPQPPVLIRRSIDEDVLGGYPIKRGEDIFISVWNLHRCPNHWEEADKFNPERWPLDGPNPNETNQNYSYLPFGGGPRKCVGDMFATFENVVAVAMLVRRFDFQMALGAPPVKMTTGATIHTTEGLNMTVTRRTRPPVVPNLEMATLEVDSSVNSSDINSVSNQRAETEAS 614
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059AXX5 ((Uncharacterized protein {ECO:0000313|EMBL:KCW58728.1}))
HSP 1 Score: 975.696 bits (2521), Expect = 0.000e+0
Identity = 476/611 (77.91%), Postives = 535/611 (87.56%), Query Frame = 0
Match: A0A059AXX5 ((Uncharacterized protein {ECO:0000313|EMBL:KCW58728.1}))
HSP 1 Score: 975.696 bits (2521), Expect = 0.000e+0
Identity = 476/611 (77.91%), Postives = 535/611 (87.56%), Query Frame = 0
Query: 16 LQSKIQHNR-RNPTSTFTKLNGSYRF-SGIKCSVSNGKLPNSTEE----DEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR-EAVADQKGEVSVART 618
Q+K++ R R P S KL G+YR+ + I C+ SNG+ P S ++ E+ +++ RAELSARIA+GEFT+E+SGF SQ+ +GL+K+G P EVLD +W +S+D+PKIPEAKGAI AI++EAFFIPLYELYLTYGG+FRLTFGPKSFLIVSDP++AKHIL+DNSKAYSKGILAEILEFVMGKGLIPADGE+WRVRRR IVPALHQKYV AMI++FGQ T RLC KLD AAS+ EDVEMESLFSRLTLD+IGKAVFNYDFDSLTNDTGI+EAVYTVLREAEDRSVSPIPFWEIPIWKDISPK KKVN AL+L+N L+DLIAICKRMVDEE+LQFHEEYMNE D PSILHFLLASGDDVSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLSKEP+VM KLQNEVDSVLGDRIPTIEDMKKLKYTTRVINES+RLYPQPPVLIRRSLE+D LG+YPIKR EDIFIS+WNLHR P W DADKFNPERWPLDGPNPNETNQ FSYLPFGGGPRKCVGDMFASFE +VAVAMLVRRFNFQMALGAP VKMTTGATIHTTEGL MTVT+R+ PP V T E L+ ++S + S+ ++V QKGEV+ A +
Sbjct: 20 FQTKLRTTRFRQPASA--KLKGNYRWATAIACASSNGREPESVDDRGVKSAEQLLEEKRRAELSARIAAGEFTIERSGFPSQVRNGLSKVGVPPEVLDFFFQWFDSSKDHPKIPEAKGAIKAIQNEAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNSKAYSKGILAEILEFVMGKGLIPADGEVWRVRRRTIVPALHQKYVAAMINLFGQTTQRLCDKLDIAASEREDVEMESLFSRLTLDVIGKAVFNYDFDSLTNDTGIIEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKQKKVNEALKLVNDALNDLIAICKRMVDEEDLQFHEEYMNEED--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPTVMSKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESMRLYPQPPVLIRRSLENDFLGKYPIKRGEDIFISVWNLHRSPHHWIDADKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFEMVVAVAMLVRRFNFQMALGAPAVKMTTGATIHTTEGLKMTVTRRLQPPIVPTLEMPLLQVENSASSSQGDSVLSQKGEVTSAHS 626
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540KET6 ((Uncharacterized protein {ECO:0000313|EMBL:TQD72744.1}))
HSP 1 Score: 974.926 bits (2519), Expect = 0.000e+0
Identity = 485/624 (77.72%), Postives = 531/624 (85.10%), Query Frame = 0
Match: A0A540KET6 ((Uncharacterized protein {ECO:0000313|EMBL:TQD72744.1}))
HSP 1 Score: 974.926 bits (2519), Expect = 0.000e+0
Identity = 485/624 (77.72%), Postives = 531/624 (85.10%), Query Frame = 0
Query: 2 ATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTE------EDEEEEKKKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR-EAVADQKGEVSVAR 617
A T+ L F + LQ+K+ NR P K G + S I CS SNG+ P+S + E EEK+ RAELSA IASGEFTVEKSGF SQL GL+K+G P+ +LD L W A EDYPKIPEAKGAISAIRSEAFFIPL+ELYLTYGG++RL FGPKSFLIVSDP +AKHILR+NSKAYSKGILAEILEFVMG GLIPADGEIWR RRRAIVPALHQKYVTAMI++FG+ATDRLC KLDAAASD EDVEMESLFSRLTLDIIGKA+FNYDFDSLTNDTGIVEAVYTVLRE+EDRSVSPIP WEIPIWKDISP+ +KV++AL+LIN LDDLIAICKRMVDEEELQFHEEYMNE D PSILHFLLASGDDVSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLSKEP VM KLQ EVDSVLGDR PTIEDMKKLKY TRVINESLRLYPQPPVLIRRSLEDDKLG++PIKRNEDIFI IWNLHR P++W+DADKF PERWPLDGPNPNETNQ F YLPFGGGPRKCVGDMFA+FE +VA++MLVRRFNFQ+ALGAP VKMTTGATIHTTEGL MTVT+RI PP V T E S + D+ V + + ++V QKGEVS A
Sbjct: 60 AATIPLLQFVPAKTLQAKLHSNRLRPI----KQRGRFGLSTITCSSSNGREPDSVDIGVKSVERLLEEKR---RAELSAGIASGEFTVEKSGFPSQLKSGLSKVGVPTGILDFLFSWADAPEDYPKIPEAKGAISAIRSEAFFIPLFELYLTYGGIYRLKFGPKSFLIVSDPAIAKHILRENSKAYSKGILAEILEFVMGTGLIPADGEIWRRRRRAIVPALHQKYVTAMINLFGEATDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKALFNYDFDSLTNDTGIVEAVYTVLRESEDRSVSPIPVWEIPIWKDISPRQRKVSTALKLINTALDDLIAICKRMVDEEELQFHEEYMNEQD--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRVMAKLQEEVDSVLGDRFPTIEDMKKLKYATRVINESLRLYPQPPVLIRRSLEDDKLGDFPIKRNEDIFICIWNLHRSPKQWDDADKFYPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDMFATFETVVALSMLVRRFNFQLALGAPEVKMTTGATIHTTEGLKMTVTRRIKPPIVPTLEMPSFEVDTPVGIPKGDSVVGQKGEVSSAH 674
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314LDR6 ((Protein lutein deficient 5, chloroplastic {ECO:0000313|EMBL:OIT39795.1}))
HSP 1 Score: 974.541 bits (2518), Expect = 0.000e+0
Identity = 477/622 (76.69%), Postives = 540/622 (86.82%), Query Frame = 0
Match: A0A314LDR6 ((Protein lutein deficient 5, chloroplastic {ECO:0000313|EMBL:OIT39795.1}))
HSP 1 Score: 974.541 bits (2518), Expect = 0.000e+0
Identity = 477/622 (76.69%), Postives = 540/622 (86.82%), Query Frame = 0
Query: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSG-IKCSVSNGKLPNSTEEDEEEEKK---KRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAVTA-ETSSLKDDSSVNMSR-EAVADQKGEVSVA 616
MA ++ L FP ++ + +R PT++ K NG+Y + I+C+ SNG+ P S E + +K ++ RAELSARIASGEFTVE++GF S + +GL+KLG P E S+W+G DYP+IPEAKG+ISA+R+EAFFIPLYEL+LTYGG+FRLTFGPKSFLIVSDP++AKHIL+DNSKAYSKGILAEIL+FVMGKGLIPADGEIWRVRRRAIVPALHQKYV AMI +FGQATDRLC KLDAAASD EDVEMESLFSRLTLDIIGKAVFNYDFDSLT DTGIVEAVYTVLREAEDRSV+PIP WEIPIWKDISPKLKKVN+AL+LIN TLDDLIA+CKRMVDEEELQFHEEYMNE D PSILHFLLASGD+VSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLSKEPSVM KLQ+EVDSVLGDR PTIED+KKL+YTTRVINESLRLYPQPPVLIRRS+++D LG YPIKR EDIFIS+WNLHRCP WE+ADKFNPERWPLDGPNPNETNQ +SYLPFGGGPRKCVGDMFA+FE +VAVAMLVRRF+FQMA+GAPPVKMTTGATIHTTEGLNMTVT+R PP V E ++L+ DSSVN S +V++Q+ E +
Sbjct: 1 MAASVPLLQFPTHSLHKTTL--SRFRPTTS-PKFNGNYGYCCTIRCNSSNGREPESVNEGVKTVEKLLEEKRRAELSARIASGEFTVEQTGFPSLVKNGLSKLGVPKEFFQFFSQWLG---DYPRIPEAKGSISAVRNEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNSKAYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMIGLFGQATDRLCKKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLTVDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDISPKLKKVNTALKLINDTLDDLIALCKRMVDEEELQFHEEYMNEKD--PSILHFLLASGDEVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVMAKLQDEVDSVLGDRFPTIEDLKKLRYTTRVINESLRLYPQPPVLIRRSIDEDVLGGYPIKRGEDIFISVWNLHRCPNHWEEADKFNPERWPLDGPNPNETNQNYSYLPFGGGPRKCVGDMFATFENVVAVAMLVRRFDFQMAIGAPPVKMTTGATIHTTEGLNMTVTRRTRPPVVPKLEMATLEIDSSVNSSDINSVSNQRAEAEAS 614
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251P439 ((Uncharacterized protein {ECO:0000313|EMBL:ONI05135.1}))
HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 474/606 (78.22%), Postives = 525/606 (86.63%), Query Frame = 0
Match: A0A251P439 ((Uncharacterized protein {ECO:0000313|EMBL:ONI05135.1}))
HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 474/606 (78.22%), Postives = 525/606 (86.63%), Query Frame = 0
Query: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTEEDEEEEK--KKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR 603
MA T+ L F + Q+KI NR PT K G++ S + CS SNG+ P+S + + E+ +++ RAELSARIASGEFTVEK+G+ SQL +GL+KLG P E+LD L W A + PKIPEAKGAI AI+SEAFFIPLYELYLTYGG++RLTFGPKSFLIVSDP++AKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYV AMI++FG+AT+RLC KLDAAASD EDVEMESLFSRLTLDIIGKA+FNYDFDSLTNDTGIVEAVYTVLREAEDRSV+PIP WEIPIWKDISP+ +KV +AL+LIN TLDDLIAICKRMVDEEELQFHEEYMNE D PSILHFLLASGDDVSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLS EPSVM KLQ E DSVLGDR PTIED+KKLKY TRVINESLRLYPQPPVLIRRSLEDD+LG+Y IKRNEDIFI IWNLHR P++W+DADKF PERWPLDGPNPNETNQ F YLPFGGGPRKCVGDMFA++E +VA+AMLVRRFNFQMALGAP VKMTTGATIHTTEGL MTVT+RI PP V T E + + D+SV S+
Sbjct: 1 MAATIPLLQFVPTKTFQAKIHSNRLRPT----KQRGTFGLSMVTCSSSNGREPDSVDGVKSVERLLEEKRRAELSARIASGEFTVEKTGYPSQLKNGLSKLGVPREILDFLFSWADAHDGSPKIPEAKGAIGAIQSEAFFIPLYELYLTYGGIYRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMINLFGEATERLCQKLDAAASDGEDVEMESLFSRLTLDIIGKALFNYDFDSLTNDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDISPRQRKVATALKLINTTLDDLIAICKRMVDEEELQFHEEYMNEQD--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSTEPSVMSKLQEEADSVLGDRCPTIEDVKKLKYATRVINESLRLYPQPPVLIRRSLEDDRLGDYSIKRNEDIFICIWNLHRSPKQWDDADKFKPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDMFATYETVVALAMLVRRFNFQMALGAPEVKMTTGATIHTTEGLKMTVTRRIKPPIVPTLEMPTFEVDTSVGASK 600
BLAST of XM_017360263.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4ECA4 ((Full=PREDICTED: cytochrome {ECO:0000313|EMBL:VVA13076.1}))
HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 476/615 (77.40%), Postives = 531/615 (86.34%), Query Frame = 0
Match: A0A5E4ECA4 ((Full=PREDICTED: cytochrome {ECO:0000313|EMBL:VVA13076.1}))
HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 476/615 (77.40%), Postives = 531/615 (86.34%), Query Frame = 0
Query: 1 MATTLNLHLFPAQQFLQSKIQHNRRNPTSTFTKLNGSYRFSGIKCSVSNGKLPNSTEEDEEEEK--KKRIRAELSARIASGEFTVEKSGFQSQLLDGLAKLGAPSEVLDVLSKWIGASEDYPKIPEAKGAISAIRSEAFFIPLYELYLTYGGVFRLTFGPKSFLIVSDPTVAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVTAMISMFGQATDRLCAKLDAAASDAEDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPFWEIPIWKDISPKLKKVNSALELINGTLDDLIAICKRMVDEEELQFHEEYMNETDPTPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETTAAVLTWTFYLLSKEPSVMLKLQNEVDSVLGDRIPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDKLGEYPIKRNEDIFISIWNLHRCPQRWEDADKFNPERWPLDGPNPNETNQAFSYLPFGGGPRKCVGDMFASFEAIVAVAMLVRRFNFQMALGAPPVKMTTGATIHTTEGLNMTVTKRITPPAV-TAETSSLKDDSSVNMSR-EAVADQKG 611
MA T+ L F + Q+KI NR PT K G++ S + CS SNG+ P+S + + E+ +++ RAELSARIASGEFTVEK+G+ SQL +GL+KLG P E+LD L W A + PKIPEAKGAI AI+SEAFFIPLYELYLTYGG++RLTFGPKSFLIVSDP++AKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYV AMI++FG+AT+RLC KLDAAASD EDVEMESLFSRLTLDIIGKA+FNYDFDSLTNDTGIVEAVYTVLREAEDRSV+PIP WEIPIWKDISP+ +KV +AL+LIN TLDDLIAICKRMVDEEELQFHEEYMNE D PSILHFLLASGDDVSSKQLRDDLMTMLIAGHET+AAVLTWTFYLLS EPSVM KLQ E DSVLGDR PTIED+KKLKY TRVINESLRLYPQPPVLIRRSLEDD+LG+Y IKRNEDIFI IWNLHR P++W+DADKF PERWPLDGPNPNETNQ F YLPFGGGPRKCVGDMFA++E +VA+AMLVRRFNFQMALGAP VKMTTGATIHTTEGL MTVT+RI PP V T E + + D+SV S+ +++ +KG
Sbjct: 1 MAATIPLLQFVPTKTFQAKIHSNRLRPT----KQRGTFGLSMVTCSSSNGREPDSVDGVKSVERLLEEKRRAELSARIASGEFTVEKTGYPSQLKNGLSKLGVPREILDFLFSWADAHDGSPKIPEAKGAIGAIQSEAFFIPLYELYLTYGGIYRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMINLFGEATERLCQKLDAAASDGEDVEMESLFSRLTLDIIGKALFNYDFDSLTNDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDISPRQRKVATALKLINTTLDDLIAICKRMVDEEELQFHEEYMNEQD--PSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSTEPSVMSKLQEEADSVLGDRCPTIEDVKKLKYATRVINESLRLYPQPPVLIRRSLEDDRLGDYSIKRNEDIFICIWNLHRSPKQWDDADKFKPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDMFATYETVVALAMLVRRFNFQMALGAPEVKMTTGATIHTTEGLKMTVTRRIKPPIVPTLEMPTFEVDTSVGASKGDSLVGKKG 609
| Match Name | Stats | Description |
|---|---|---|
| A0A059P9X5 | E-Value: 0.000e+0, PID: 99.68 | (Chloroplast cytochrome P450 monooxygenase 97A3 {E... [more] |
| A0A5N5HWU8 | E-Value: 0.000e+0, PID: 77.29 | (Protein LUTEIN DEFICIENT 5 {ECO:0000313|EMBL:KAB2... [more] |
| A0A2C9VBY7 | E-Value: 0.000e+0, PID: 78.83 | (Uncharacterized protein {ECO:0000313|EMBL:OAY4248... [more] |
| A0A1S4CL37 | E-Value: 0.000e+0, PID: 77.01 | (protein LUTEIN DEFICIENT 5, chloroplastic-like {E... [more] |
| A0A1U7YTG1 | E-Value: 0.000e+0, PID: 76.85 | (protein LUTEIN DEFICIENT 5, chloroplastic {ECO:00... [more] |
| A0A059AXX5 | E-Value: 0.000e+0, PID: 77.91 | (Uncharacterized protein {ECO:0000313|EMBL:KCW5872... [more] |
| A0A540KET6 | E-Value: 0.000e+0, PID: 77.72 | (Uncharacterized protein {ECO:0000313|EMBL:TQD7274... [more] |
| A0A314LDR6 | E-Value: 0.000e+0, PID: 76.69 | (Protein lutein deficient 5, chloroplastic {ECO:00... [more] |
| A0A251P439 | E-Value: 0.000e+0, PID: 78.22 | (Uncharacterized protein {ECO:0000313|EMBL:ONI0513... [more] |
| A0A5E4ECA4 | E-Value: 0.000e+0, PID: 77.40 | (Full=PREDICTED: cytochrome {ECO:0000313|EMBL:VVA1... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |