Resource Type:
Polypeptide
Name:
XM_017363451.1
Identifier:
XM_017363451.1-protein
Sequence:
MGCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRG
GFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHV
YKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYC
ADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEY
LHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRV
MGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHN
LVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATR
PLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRDRRSTHDAVDSP
GHNGSPTTHKNSPDFRKRDLMTNSRNGETSGGSGRRWAVDDLEYTESQRD
SPVSAGRTREPRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE
Sequence Length:
499
Sequence Checksum:
36f0c0fa23f94636c8b4ce33bbc46521
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363451.1, derives from mRNA, XM_017363451.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059B5Z1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 423/507 (83.43%), Postives = 453/507 (89.35%), Query Frame = 0
Match: A0A059B5Z1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 423/507 (83.43%), Postives = 453/507 (89.35%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP-GHNGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS+ + +G +EV KKDS KE S S+H++RV SD TKSR G DPKKE+P+PKD PT HIAAQTFTFRELAAATKNF PE LLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EG+HPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN+R GEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ +QS+RVG STPR + DRR T + +DSP G+ GSP+TH+NSPDFRKRD L T + G ET GGSGR+W +DD E +S RDSP SAGR RE PRNRDLDRERAVAEAKVWGEN RE+K+ GA+ SFD+TNE
Sbjct: 3 GCFPCFGSSKGNDGSGVKEVSKKDSAKEASTAHSHHVSRVSSDKTKSRNGSDPKKEVPMPKDGPTAHIAAQTFTFRELAAATKNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNSRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSASAQSNRVGPSTPRMKDDRRGTAEGLDSPDGYRGSPSTHRNSPDFRKRDQVRQLTTGAELGRSETGGGSGRKWGLDDFERVDSHRDSPGSAGRGRETPRNRDLDRERAVAEAKVWGENWRERKRAGAVGSFDSTNE 509
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z5P4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 427/512 (83.40%), Postives = 452/512 (88.28%), Query Frame = 0
Match: A0A5B6Z5P4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 427/512 (83.40%), Postives = 452/512 (88.28%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP------GHNGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTREP-RNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS +G NG +EV KKDS KEGSA QS+ ++RV SD +KSR G D KKE +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEF+PLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R GEHNLVAWARPLFKDRRKFPKMADPLLQG YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ +QS+RVG STPR++ DRR+ + +DSP G +GSP+THKNSPDFRKRD L T + G +TSGGSGR+W VDDLE ES+RDSPVS GR RE RNRDLDRERAVAEAKVWGEN RE+K+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEG-NGVKEVAKKDSVKEGSAAQSHRVSRVSSDKSKSRSGSDNKKEPAVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFLPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGHYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAATAQSNRVGPSTPRNKDDRRNAANGLDSPDEPGRGGRHGSPSTHKNSPDFRKRDSARELSTGAELGRSQTSGGSGRKWGVDDLERQESERDSPVSTGRARETHRNRDLDRERAVAEAKVWGENWRERKRANAMGSFDGTNE 513
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RCT3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 853.973 bits (2205), Expect = 0.000e+0
Identity = 427/511 (83.56%), Postives = 449/511 (87.87%), Query Frame = 0
Match: A0A5N6RCT3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 853.973 bits (2205), Expect = 0.000e+0
Identity = 427/511 (83.56%), Postives = 449/511 (87.87%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRD-RRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNG-----ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS + ++G +EV KKDS KEGSA QS+H+ RV SD +KSR G DPKKE +PKD PT HIAAQTFTFRELA ATKNF PECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLP +K+PLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL E YHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R GEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ SQ++RVG STPRSRD RRS D +DSP G NGSP+ +KNSPDFRKRD +S + ET GGSGR+ VD+LE ESQRDSPVS GR RE PRNRDLDRERAVAEAKVWGEN REKK+ M SFDATNE
Sbjct: 3 GCFPCFGSSNKE-ESGVKEVAKKDSVKEGSAGQSHHVIRVSSDKSKSRSGSDPKKEPAIPKDGPTAHIAAQTFTFRELATATKNFRPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPQDKKPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEVYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSAASQNNRVGPSTPRSRDERRSLGDGLDSPDQPGRGGWNGSPSAYKNSPDFRKRDARESSSSAALARIETGGGSGRKLGVDELERHESQRDSPVSTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANVMGSFDATNE 512
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RHH8 ((Serine/threonine-protein kinase PBS1 {ECO:0000313|EMBL:EXB74832.1}))
HSP 1 Score: 848.966 bits (2192), Expect = 0.000e+0
Identity = 426/508 (83.86%), Postives = 447/508 (87.99%), Query Frame = 0
Match: W9RHH8 ((Serine/threonine-protein kinase PBS1 {ECO:0000313|EMBL:EXB74832.1}))
HSP 1 Score: 848.966 bits (2192), Expect = 0.000e+0
Identity = 426/508 (83.86%), Postives = 447/508 (87.99%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSPG--HNGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS +DG +G +EV KKDS KEGS QS+H+TRV S+ +KSR G DPKKE +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R GEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ S+RVG STPRSR DRRS + +DSP NGSP+TH+NSPDFRKRDL+ G ET GGSGR+W +DDL+ +SQRDSP SAGR RE PR RDLDRER VAEAKVWGEN KK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNNDG-SGVKEVNKKDSVKEGSTAQSHHVTRVSSEKSKSRSGSDPKKESTIPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAPPYSNRVGPSTPRSRDDRRSMAEGLDSPDGRRNGSPSTHRNSPDFRKRDLVRELNTGGELGRIETGGGSGRKWGLDDLDRPDSQRDSPASAGRARETPRTRDLDREREVAEAKVWGENW--KKRATAMGSFDGTNE 507
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5W054 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 848.966 bits (2192), Expect = 0.000e+0
Identity = 424/506 (83.79%), Postives = 444/506 (87.75%), Query Frame = 0
Match: A0A6J5W054 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 848.966 bits (2192), Expect = 0.000e+0
Identity = 424/506 (83.79%), Postives = 444/506 (87.75%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRD-RRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNGETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS +G +G +EV KKDS KEGSA QS+H+TRV SD KSR G D KKE +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHD P +KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EG+HPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R HGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ S+RVG STPR +D RR+ D +DSP G +GSP+THKNSPD+R+RD ET GSGRRW +D LE ESQRDSPVSAGR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEG-SGVKEVTKKDSVKEGSAAQSHHVTRVSSDK-KSRNGSDHKKEPAIPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDFPSDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSASGHSNRVGPSTPRHKDERRNMADGLDSPDEPGRGGRHGSPSTHKNSPDYRRRDTGVELGRIETGTGSGRRWGLDGLERQESQRDSPVSAGRARENPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDGTNE 506
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5ERU2 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PON88269.1}))
HSP 1 Score: 847.81 bits (2189), Expect = 0.000e+0
Identity = 426/513 (83.04%), Postives = 444/513 (86.55%), Query Frame = 0
Match: A0A2P5ERU2 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PON88269.1}))
HSP 1 Score: 847.81 bits (2189), Expect = 0.000e+0
Identity = 426/513 (83.04%), Postives = 444/513 (86.55%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSPGH------NGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAM-DSFDATNE 499
GCFPCFGSS +G G +EV KKDS KEGS QS+H+T V SD +KSR G DPKKE +PKD PT HIAAQTF FRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHH NLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R GEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ S+RVG STP +R DRRS + +DSP NGSP+TH+NSPDFRKRDL G ET GGSGR+W +DDLE +SQRDSP SAGR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEGSGGVKEVTKKDSVKEGSTAQSHHVTGVSSDKSKSRSGSDPKKEPVIPKDGPTAHIAAQTFAFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAQGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAA---SNRVGPSTPWNRDDRRSMGEGLDSPDEHGRGRRNGSPSTHRNSPDFRKRDLARELSTGAELSRIETGGGSGRKWGLDDLERPDSQRDSPASAGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGGSFDGTNE 512
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AC98 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 847.04 bits (2187), Expect = 0.000e+0
Identity = 425/512 (83.01%), Postives = 448/512 (87.50%), Query Frame = 0
Match: A0A5J5AC98 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 847.04 bits (2187), Expect = 0.000e+0
Identity = 425/512 (83.01%), Postives = 448/512 (87.50%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSPGH------NGSPTTHKNSPDFRKRD----LMTNSRNG--ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCF SS +G NG +EV KKDS KEGS QS+H +RV SD +KSR G DPKKE +PK T HIAAQTFTFRELAAAT+NF PECLLGEGGFG VYKGRLESTGQVVAVKQLDR+GLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHD+ANPPVIYRDLKSSNILL +GYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R GEHNLVAWARPLFKDRRKFPKMADPLLQG YPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPNA+ +QSSRVG STPR++ DRR+ + +DSPG +GSP+THKNSPDFRKRD L T + G ETSGGSGR+W VD LE ESQRDSPVS GRTRE PRNRDLDRERAVAEAKVWGEN R KK+ A SFD TNE
Sbjct: 3 GCFPCFRSSNKEG-NGVKEVAKKDSVKEGSVAQSHHGSRVSSDKSKSRSGSDPKKEPAVPKVGSTAHIAAQTFTFRELAAATRNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRDGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDRANPPVIYRDLKSSNILLDDGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLQGHYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAATTQSSRVGPSTPRNKDDRRTMANGMDSPGEPGSSGRHGSPSTHKNSPDFRKRDSERKLSTGAELGRSETSGGSGRKWGVDGLECQESQRDSPVSTGRTRETPRNRDLDRERAVAEAKVWGENWRGKKRANATGSFDGTNE 513
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KHY8 ((Serinethreonine-protein kinase pbs1 {ECO:0000313|EMBL:OIT24504.1}))
HSP 1 Score: 846.655 bits (2186), Expect = 0.000e+0
Identity = 420/512 (82.03%), Postives = 450/512 (87.89%), Query Frame = 0
Match: A0A1J6KHY8 ((Serinethreonine-protein kinase pbs1 {ECO:0000313|EMBL:OIT24504.1}))
HSP 1 Score: 846.655 bits (2186), Expect = 0.000e+0
Identity = 420/512 (82.03%), Postives = 450/512 (87.89%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSR-DRRSTHDAVDSP-----GHNGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAM-DSFDATNE 499
GCFPCF SS + NG +EVVKK+SFK+GSA QS H+++V SD +KSRG DPKK+ +PKD PT HIAAQTFTFRELAAATKNF PECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPP+KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNAR+HGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQA+TRPLIGDVVTAL+YLASQ YDPNA +QS+RVGSSTPRSR DR + D V+SP H+GSP+ +NSPD RKRD + G TSGGSGR+W +D+ E +SQ++SPVSAGRTRE PRNRDLDRERAVAEAKVWGEN R+KK+ A SFD NE
Sbjct: 3 GCFPCFRSSNKESGNGVKEVVKKESFKDGSAAQSIHLSKVNSDKSKSRGSHDPKKDPAIPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARSHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQASTRPLIGDVVTALSYLASQTYDPNAVGAQSNRVGSSTPRSREDRLHSSDGVNSPDEHCSAHHGSPSIQRNSPDSRKRDSARDFNTGIELRKIATSGGSGRKWGLDESERPDSQKNSPVSAGRTRETPRNRDLDRERAVAEAKVWGENWRDKKKTSARGSSFDGMNE 514
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314ZJB8 ((Serine/threonine-protein kinase PBL27 {ECO:0000313|EMBL:PQQ19439.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 425/512 (83.01%), Postives = 447/512 (87.30%), Query Frame = 0
Match: A0A314ZJB8 ((Serine/threonine-protein kinase PBL27 {ECO:0000313|EMBL:PQQ19439.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 425/512 (83.01%), Postives = 447/512 (87.30%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRD-RRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS +G +G +EV KKDS KEGSA QS+H+TRV SD KSR G D KKE +PKD PT HIAAQTFTFRELAAATKNF ECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLP +KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EG+HPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R HGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ S+RVG STPR +D RR+ D +DSP G +GSP+THKNSPD+R+RD + + G ET GSGRRW +D LE ESQRDSPVSAGR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEG-SGVKEVTKKDSVKEGSAAQSHHVTRVSSDK-KSRNGSDHKKEPAIPKDGPTAHIAAQTFTFRELAAATKNFRAECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPSDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSASGHSNRVGPSTPRHKDERRNMADGLDSPDEPGRGGRHGSPSTHKNSPDYRRRDPIRDLSTGVELGRIETGTGSGRRWGLDGLERQESQRDSPVSAGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDGTNE 512
BLAST of XM_017363451.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5S2U3 ((serine/threonine-protein kinase PBL27 {ECO:0000313|RefSeq:XP_021807761.1}))
HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0
Identity = 425/512 (83.01%), Postives = 447/512 (87.30%), Query Frame = 0
Match: A0A6P5S2U3 ((serine/threonine-protein kinase PBL27 {ECO:0000313|RefSeq:XP_021807761.1}))
HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0
Identity = 425/512 (83.01%), Postives = 447/512 (87.30%), Query Frame = 0
Query: 2 GCFPCFGSSEDDGKNGEQEVVKKDSFKEGSAPQSYHMTRVGSDNTKSRGGFDPKKELPLPKDVPTPHIAAQTFTFRELAAATKNFMPECLLGEGGFGHVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPNKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNARTHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNASVSQSSRVGSSTPRSRD-RRSTHDAVDSP------GHNGSPTTHKNSPDFRKRDLMTNSRNG------ETSGGSGRRWAVDDLEYTESQRDSPVSAGRTRE-PRNRDLDRERAVAEAKVWGENLREKKQGGAMDSFDATNE 499
GCFPCFGSS +G +G +EV KKDS KEGSA QS+H+TRV SD KSR G D KKE +PKD PT HIAAQTFTFRELAAATKNF ECLLGEGGFG VYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLP +KEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILL EG+HPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDN R HGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQ YDPN++ S+RVG STPR +D RR+ D +DSP G +GSP+THKNSPD+R+RD + + G ET GSGRRW +D LE ESQRDSPVSAGR RE PRNRDLDRERAVAEAKVWGEN REKK+ AM SFD TNE
Sbjct: 3 GCFPCFGSSNKEG-SGVKEVTKKDSVKEGSAAQSHHVTRVSSDK-KSRNGSDHKKEPAIPKDGPTAHIAAQTFTFRELAAATKNFKAECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPSDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNSASGHSNRVGPSTPRHKDERRNMADGLDSPDEPGRGGRHGSPSTHKNSPDYRRRDPIRDLNTGVELGRIETGTGSGRRWGLDGLERQESQRDSPVSAGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDGTNE 512
| Match Name | Stats | Description |
|---|---|---|
| A0A059B5Z1 | E-Value: 0.000e+0, PID: 83.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B6Z5P4 | E-Value: 0.000e+0, PID: 83.40 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5N6RCT3 | E-Value: 0.000e+0, PID: 83.56 | Protein kinase domain-containing protein {ECO:0000... [more] |
| W9RHH8 | E-Value: 0.000e+0, PID: 83.86 | (Serine/threonine-protein kinase PBS1 {ECO:0000313... [more] |
| A0A6J5W054 | E-Value: 0.000e+0, PID: 83.79 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2P5ERU2 | E-Value: 0.000e+0, PID: 83.04 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A5J5AC98 | E-Value: 0.000e+0, PID: 83.01 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1J6KHY8 | E-Value: 0.000e+0, PID: 82.03 | (Serinethreonine-protein kinase pbs1 {ECO:0000313|... [more] |
| A0A314ZJB8 | E-Value: 0.000e+0, PID: 83.01 | (Serine/threonine-protein kinase PBL27 {ECO:000031... [more] |
| A0A6P5S2U3 | E-Value: 0.000e+0, PID: 83.01 | (serine/threonine-protein kinase PBL27 {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |