Resource Type:
Polypeptide
Name:
XM_017363271.1
Identifier:
XM_017363271.1-protein
Sequence:
MATGAMEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMK
LVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQ
VESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQT
SAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKEN
AEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLS
LELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTV
KALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAPDSAY
SSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSP
RRSENRQANLGDKNLDSGSRTTMSPTGEMPNVSRTNGSLSHGHNRTSSAS
STLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQRE
PEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKM
VQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTD
ATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAA
TLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFH
ENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEG
GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVAL
SQSGTPRAKEKAQALLSYFRNQRHGNGGRG
Sequence Length:
830
Sequence Checksum:
8d42f9b5e9ee009d51854635af30a824
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363271.1, derives from mRNA, XM_017363271.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW38 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1268.83 bits (3282), Expect = 0.000e+0
Identity = 636/836 (76.08%), Postives = 709/836 (84.81%), Query Frame = 0
Match: A0A5B7AW38 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1268.83 bits (3282), Expect = 0.000e+0
Identity = 636/836 (76.08%), Postives = 709/836 (84.81%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP----------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS FHLSS DN++ PVQ+YYQK+EE+ K++K VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+KH+G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEK+ E Y+DQ++ALVT+MHERLVL+KQS+S NTV IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+S +L PSSL HA SGAPRDS P DSA S GSPGNN +SSS ++EGTSPS PRSSSE SLS A NGHAL+I +S R SE+R N G++ LDSG + SP+ E + S + LS GHNRT+SASSTLSN+NFSQG PGD NEA S TAYS D SGE+TSE Q+ TL+S +REPEF PR ETRSR+Q+IWRRPS+RFVPRIVSSPA++ RA + VE Q++K+V+DL+STS++ QRDATA LRLLAKHNMDNRIVIA+CG I LLV LL S D QENAVTALLNLSINDNNK AI NADAI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAI+PLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSS+FC+ VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFHLSSHDNINCAPVQKYYQKIEEILKLLKPVLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKHMGYEQTSAVITKAIRDQVEVSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKDGEAKYIDQMIALVTHMHERLVLMKQSQSSNTVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSTSLYQPSSLT-HAESGAPRDSHILPHSRSNQPILTDSARSMGSPGNNLMSSSGFHQEGTSPSHPRSSSEGSLSGVAGNGHALDIGRISLRSSEDRLGNSGERTLDSGGQHPTSPSREEFSSASGVDEQLSQGHNRTASASSTLSNSNFSQGTPGDGNEAFSHATAYSSDTSGEVTSEPQATTTLTSPRREPEFPPRLETRSRSQTIWRRPSERFVPRIVSSPAMDMRADLSGVETQVRKLVEDLRSTSVDVQRDATAGLRLLAKHNMDNRIVIASCGAISLLVYLLHSADTEIQENAVTALLNLSINDNNKTAIANADAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSKFCSTVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 835
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AY94 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1262.28 bits (3265), Expect = 0.000e+0
Identity = 634/836 (75.84%), Postives = 706/836 (84.45%), Query Frame = 0
Match: A0A5B7AY94 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1262.28 bits (3265), Expect = 0.000e+0
Identity = 634/836 (75.84%), Postives = 706/836 (84.45%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP----------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS FHLSS DN++ PVQ+YYQK+EE+ K++K VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+K +G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEKN E +Y+DQ++ALVT+MHERLVL+KQS+S NTV IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+S +L PSSL HA SGAPRDS P DSA S GSPGNN +SSS ++EGTSPS PRSSSE SLS A NGHAL+I +S R SE+R N G++ LDSG + SP+ E + S + LS GHNRT+SASSTLSN+NFSQG PGD NEA S TAYS D SGE+TSE Q+ TL+S +REPEF PR ETRSR+Q+IWRRPS+RFVPRIVSSPA++ RA + VE Q++K+V+DL+STS++ QRDATA LRLLAKHNMDNRIVIA+CG I LLV LL S D QENAVTALLNLSINDNNK I NA+AI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAI+PLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATI EGRAAIGQE GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQ LLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFHLSSHDNINCAPVQKYYQKIEEILKLLKPVLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKQMGYEQTSAVITKAIRDQVEDSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKNGEAEYIDQMIALVTHMHERLVLMKQSQSSNTVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSTSLYQPSSLT-HAESGAPRDSHILPHSRSNQPILTDSARSMGSPGNNLMSSSGFHQEGTSPSHPRSSSEGSLSGVAGNGHALDIGRISLRSSEDRLGNSGERTLDSGGQHPTSPSREEFSSASGVDEQLSQGHNRTASASSTLSNSNFSQGTPGDGNEAFSHATAYSSDTSGEVTSEPQATTTLTSPRREPEFPPRLETRSRSQTIWRRPSERFVPRIVSSPAMDMRADLSGVETQVRKLVEDLRSTSVDVQRDATAGLRLLAKHNMDNRIVIASCGAISLLVYLLHSADTEIQENAVTALLNLSINDNNKTTIANAEAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIPEGRAAIGQELGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQQLLSYFRNQRHGNAGRG 835
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXU0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1248.8 bits (3230), Expect = 0.000e+0
Identity = 632/840 (75.24%), Postives = 707/840 (84.17%), Query Frame = 0
Match: A0A5B7AXU0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1248.8 bits (3230), Expect = 0.000e+0
Identity = 632/840 (75.24%), Postives = 707/840 (84.17%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP---------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPT-----AVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS FHLSS DN++ PVQ+YYQK+EE+ K++K VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+K +G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEKN E +Y+DQ++ALVT+MHERLVL+KQS+S NTV IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+SM LN PSSL A SGAPRDS P DSA S GSPG N ISSS REGTSPS PRSSSEDS S A NGH L+I +S R SE++ AN G++ DSG ++ +SP+ E + S + LS GHNR +SASSTLSNANFS+G+PGD NE S TAY+ D SGE+TSE Q+ TL++ EPEF PR E RSR+Q+IWRRPS+RFVPRI+SSPA++TRAI T VE Q++K+V+DLK+TS++ QR+AT +LRLLAKHNMDNRIVIA CG I LLVNLLRSTD QENAVTALLNLSINDNNK I NA+AI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAIQPLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSS+FC+ VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFHLSSHDNINCAPVQKYYQKIEEILKLLKPVLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKQMGYEQTSAVITKAIRDQVEVSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKNGEAEYIDQMIALVTHMHERLVLMKQSQSSNTVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSMRLNQPSSLTL-ADSGAPRDSHILPSRGNQPMLPDSARSMGSPGKNLISSSGIYREGTSPSHPRSSSEDSSSGVAGNGHGLDIGRISLRSSEDKLANSGERTSDSGGQSPISPSRKEFSSASGADEQLSQGHNRIASASSTLSNANFSEGMPGDGNEVFSHATAYNSDTSGEVTSEPQAGTTLNTPHGEPEFPPRLEIRSRSQTIWRRPSERFVPRIISSPAIDTRAIDTRADLSGVETQVKKLVEDLKNTSVDVQRNATGDLRLLAKHNMDNRIVIAGCGAISLLVNLLRSTDTKIQENAVTALLNLSINDNNKTTIANAEAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIQPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSKFCSTVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 839
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXB5 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1246.88 bits (3225), Expect = 0.000e+0
Identity = 632/841 (75.15%), Postives = 706/841 (83.95%), Query Frame = 0
Match: A0A5B7AXB5 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1246.88 bits (3225), Expect = 0.000e+0
Identity = 632/841 (75.15%), Postives = 706/841 (83.95%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP----------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPT-----AVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS FHLSS DN++ PVQ+YYQK+EE+ K++K VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+KH+G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEKN E +Y+DQ++ALVT+MHERLVL+KQS+S NTV IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+S +L PSSL HA SGAPRDS P DSA S GSPG N ISSS REGTSPS PRSSSEDS S A NGH L+I +S R SE++ AN G++ DSG ++ +SP+ E + S + LS GHNR +SASSTLSNANFS+G+PGD NE S TAY+ D SGE+TSE Q+ TL++ EPEF PR E RSR+Q+IWRRPS+RFVPRI+SSPA++TRAI T VE Q++K+V+DLK+TS++ QR+AT +LRLLAKHNMDNRIVIA CG I LLVNLLRSTD QENAVTALLNLSINDNNK I NA+AI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAIQPLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATI EGRAAIGQE GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQ LLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFHLSSHDNINCAPVQKYYQKIEEILKLLKPVLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKHMGYEQTSAVITKAIRDQVEVSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKNGEAEYIDQMIALVTHMHERLVLMKQSQSSNTVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSTSLYQPSSL-THAESGAPRDSHILPHSRSNQPILTDSARSMGSPGKNLISSSGIYREGTSPSHPRSSSEDSSSGVAGNGHGLDIGRISLRSSEDKLANSGERTSDSGGQSPISPSRKEFSSASGADEQLSQGHNRIASASSTLSNANFSEGMPGDGNEVFSHATAYNSDTSGEVTSEPQAGTTLNTPHGEPEFPPRLEIRSRSQTIWRRPSERFVPRIISSPAIDTRAIDTRADLSGVETQVKKLVEDLKNTSVDVQRNATGDLRLLAKHNMDNRIVIAGCGAISLLVNLLRSTDTKIQENAVTALLNLSINDNNKTTIANAEAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIQPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIPEGRAAIGQELGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQQLLSYFRNQRHGNAGRG 840
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW26 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1244.18 bits (3218), Expect = 0.000e+0
Identity = 633/840 (75.36%), Postives = 706/840 (84.05%), Query Frame = 0
Match: A0A5B7AW26 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1244.18 bits (3218), Expect = 0.000e+0
Identity = 633/840 (75.36%), Postives = 706/840 (84.05%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP---------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPT-----AVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS F LSS DN++ EPVQ+YYQK+EE+ K++K VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+KH+G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEKN E +Y+DQ++ALVT+MHERLVL+KQS+S N V IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+SM LN PSSL A SGAPRDS P DSA S GSPG N ISSS REGTSPS PRSSSEDS S A NGH L+I +S R SE++ AN G++ DSG ++ +SP+ E + S + LS GHNR +SASSTLSNANFS+G+PGD NE S TAY+ D SGE+TSE Q+ TL++ EPEF PR E RSR+Q+IWRRPS+RFVPRI+SSPA++TRAI T VE Q++K+V+DLK+TS++ QR+AT +LRLLAKHNMDNRIVIA CG I LLVNLLRSTD QENAVTALLNLSINDNNK AI NADAI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAI+PLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATI EGRAAIGQE GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQ LLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFQLSSCDNINCEPVQKYYQKIEEILKLLKPVLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKHMGYEQTSAVITKAIRDQVEVSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKNGEAEYIDQMIALVTHMHERLVLMKQSQSCNPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSMRLNQPSSLTL-ADSGAPRDSHILPSRGNQPMLPDSARSMGSPGKNLISSSGIYREGTSPSHPRSSSEDSSSGVAGNGHGLDIGRISLRSSEDKLANSGERTSDSGGQSPISPSRKEFSSASGADEQLSQGHNRIASASSTLSNANFSEGMPGDGNEVFSHATAYNSDTSGEVTSEPQAGTTLNTPHGEPEFPPRLEIRSRSQTIWRRPSERFVPRIISSPAIDTRAIDTRADLSGVETQVKKLVEDLKNTSVDVQRNATGDLRLLAKHNMDNRIVIAGCGAISLLVNLLRSTDTKIQENAVTALLNLSINDNNKTAIANADAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIPEGRAAIGQELGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQQLLSYFRNQRHGNAGRG 839
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW72 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1228.77 bits (3178), Expect = 0.000e+0
Identity = 624/836 (74.64%), Postives = 692/836 (82.78%), Query Frame = 0
Match: A0A5B7AW72 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1228.77 bits (3178), Expect = 0.000e+0
Identity = 624/836 (74.64%), Postives = 692/836 (82.78%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP----------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS FHLSS DN++ P VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+K +G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEK+ E Y+DQ++ALVT+MHERLVL+KQS+S NTV IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+S +L PSSL HA SGAPRDS P DSA S GSPGNN +SSS ++EGTSPS PRSSSE SLS A NGHAL+I +S R SE+R N G++ LDSG + SP+ E + S + LS GHNRT+SASSTLSN+NFSQG PGD NEA S TAYS D SGE+TSE Q+ TL+S +REPEF PR ETRSR+Q+IWRRPS+RFVPRIVSSPA++ RA + VE Q++K+V+DL+STS++ QRDATA LRLLAKHNMDNRIVIA+CG I LLV LL S D QENAVTALLNLSINDNNK I NA+AI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAIQPLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSS+FC+ VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFHLSSHDNINCAPXP---------------VLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKQMGYEQTSAVITKAIRDQVEDSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKDGEAKYIDQMIALVTHMHERLVLMKQSQSSNTVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSTSLYQPSSLT-HAESGAPRDSHILPHSRSNQPILTDSARSMGSPGNNLMSSSGFHQEGTSPSHPRSSSEGSLSGVAGNGHALDIGRISLRSSEDRLGNSGERTLDSGGQHPTSPSREEFSSASGVDEQLSQGHNRTASASSTLSNSNFSQGTPGDGNEAFSHATAYSSDTSGEVTSEPQATTTLTSPRREPEFPPRLETRSRSQTIWRRPSERFVPRIVSSPAMDMRADLSGVETQVRKLVEDLRSTSVDVQRDATAGLRLLAKHNMDNRIVIASCGAISLLVYLLHSADTEIQENAVTALLNLSINDNNKTTIANAEAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIQPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSKFCSTVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 820
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B038 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 624/836 (74.64%), Postives = 690/836 (82.54%), Query Frame = 0
Match: A0A5B7B038 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 624/836 (74.64%), Postives = 690/836 (82.54%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQTAP----------DSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPT-GEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LK LL NIS FHLSS DN++ P VLDAI DAEIAS E L + FA SVDELRE+FE WHPLMSKVYFVLQVESL+ K+R+SGL+IFE LKSSD+ LP EL+ ASLE C QK+K +G EQTSAVITKA RDQVE S P+S+ L K D LSL+SNQELLIEAVALEKLKENAEQAEK+ E Y+DQ++ALVT+MHERLVL+KQS+S NTV IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+S +L PSSL HA SGAPRDS P DSA S GSPGNN +SSS ++EGTSPS PRSSSE SLS A NGHAL+I +S R SE+R N G++ LDSG + SP+ E + S + LS GHNRT+SASSTLSN+NFSQG PGD NEA S TAYS D SGE+TSE Q+ TL+S +REPEF PR ETRSR+Q+IWRRPS+RFVPRIVSSPA++ RA + VE Q++K+V+DL+STS++ QRDATA LRLLAKHNMDNRIVIA+CG I LLV LL S D QENAVTALLNLSINDNNK I NA+AI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAIQPLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVL+NLATI EGRAAIGQE GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQ LLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKVLLNNISCFFHLSSHDNINCAPXP---------------VLDAIIDAEIASEEPLHKAFAGFSQSVDELRELFENWHPLMSKVYFVLQVESLISKIRTSGLEIFELLKSSDRRLPDELNAASLELCAQKIKQMGYEQTSAVITKAIRDQVEVSEPSSESLAKFADCLSLRSNQELLIEAVALEKLKENAEQAEKDGEAKYIDQMIALVTHMHERLVLMKQSQSSNTVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSTSLYQPSSLT-HAESGAPRDSHILPHSRSNQPILTDSARSMGSPGNNLMSSSGFHQEGTSPSHPRSSSEGSLSGVAGNGHALDIGRISLRSSEDRLGNSGERTLDSGGQHPTSPSREEFSSASGVDEQLSQGHNRTASASSTLSNSNFSQGTPGDGNEAFSHATAYSSDTSGEVTSEPQATTTLTSPRREPEFPPRLETRSRSQTIWRRPSERFVPRIVSSPAMDMRADLSGVETQVRKLVEDLRSTSVDVQRDATAGLRLLAKHNMDNRIVIASCGAISLLVYLLHSADTEIQENAVTALLNLSINDNNKTTIANAEAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIQPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLANLATIPEGRAAIGQELGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQQLLSYFRNQRHGNAGRG 820
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAE3 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1186.02 bits (3067), Expect = 0.000e+0
Identity = 601/836 (71.89%), Postives = 698/836 (83.49%), Query Frame = 0
Match: A0A2R6PAE3 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1186.02 bits (3067), Expect = 0.000e+0
Identity = 601/836 (71.89%), Postives = 698/836 (83.49%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQT----------APDSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSP-TGEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEIS LKALL NIS FHLSS +N++ EP Q+YYQK+EE+ K++K VL+A++DA+I E L + FA L S++ELR +FE WH L SK+ FVLQVESL+ KVR+SG++I E LKS Q LPVELS +SLE +QK+K +G EQTSA+I + R+QV+G+G +S+ L K D L+LKSNQELLIEAVALEKLKENAEQAE N E +Y DQ++ALVT+MHERLV++KQS+ N V +PADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGL+VCPKTRQ LAHTNLIPNYTVKAL+A+WCESN VKLPDPM+S +LN PSSL HA + PRD T +P+S +S+GSPG N +SSS +REGT PS PRSSSE SL A NGH L+I L + SE+ AN +++L+SGS++ SP T E + S + LS GHNRT+SASST+SNAN SQG+ D NEASS VTAY+ D SGELTSE Q++ATL++ +REP+FSPR ETR R Q++WRRPSDRF PRIVSSPA++TRA + VE Q++K+V+DLKSTS++ QRDATAELRLLAKHNMDNRIVIA+C I LLVNLL S DA QENAVTALLNLSINDNNK AI NA AI+PLI+VLE+G+ EAKENSAATLFSLSVIEDNKV+IGRSGAI+PLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVK+LVELMDPAAGMVDKAVAVL+NLATI EGR AIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNS+RFC+MVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN GRG
Sbjct: 1 MEISLLKALLNNISSYFHLSSHENINHEPAQKYYQKIEEILKLLKPVLEAVSDADILFEEPLPKAFADLGHSINELRMLFENWHSLGSKINFVLQVESLISKVRASGVEILELLKSLHQRLPVELSASSLEILVQKIKQMGSEQTSAIIGQTMREQVDGTGTSSESLEKFADCLNLKSNQELLIEAVALEKLKENAEQAENNGEAEYFDQMIALVTHMHERLVVMKQSQGTNPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLSVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPMKSTSLNQPSSL-SHAENITPRDPHTHPHSRSHQPMSPESTWSTGSPGRNVVSSSGIHREGT-PSHPRSSSESSLPAVAGNGHGLDIARLLLKSSEDGPANPVERSLESGSQSPTSPSTTERLSASGADEQLSQGHNRTASASSTVSNANTSQGMLADGNEASSHVTAYNSDASGELTSESQASATLTTPRREPDFSPRLETRPRNQTMWRRPSDRFGPRIVSSPAIDTRADLSGVEAQVKKLVEDLKSTSLDAQRDATAELRLLAKHNMDNRIVIASCEAISLLVNLLSSNDAKIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIKPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSNRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 834
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6THH7 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1171.38 bits (3029), Expect = 0.000e+0
Identity = 597/837 (71.33%), Postives = 689/837 (82.32%), Query Frame = 0
Match: A0A6P6THH7 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1171.38 bits (3029), Expect = 0.000e+0
Identity = 597/837 (71.33%), Postives = 689/837 (82.32%), Query Frame = 0
Query: 4 GAMEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQT----------APDSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPTGEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
G MEI LK L+ +IS FHLS+R+NL+ +PVQ+YYQK+EE+ K++K VLDAI DAE+ S E LQ+ F L ++V++LRE+FE W PLMSK+YFVLQVESL+ KV++SGL+IFE LKS D LP ELS ASLE C+QKLKHLG EQTSA+IT+A +DQVE SG +SD L KI D L LKSNQELLIEAVALEKLKENAEQAEKN E +YLDQ++ALVT+MH+ LVL+KQS+S + V IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCE+N VKLPDP++SM+LN P+ LL HA SG P+DS +PDS S GSP + ISSSV +EG+ PS P SSSEDSL A NGH L+I+++ R SE+R N GD++ + +SP+ + N + + S GHNRT SASST SN+ +PGD NEA S Y D SGE+TS Q A+ L + QREPEF+ R ETRSR+Q+IWRRPS FVPRIVSSPAVETRA + VE Q++ +V+DL+ TS++ QR+ATAELRLLA+HNMDNRIVIANCG I LLVNLL S D QENAVTALLNLSINDNNKAAI NADAI+PLI+VL++G+ EA+EN+AATLFSLSVIE+NKV+IGRSGAIQPLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATI EGR AIGQEGGIPVLVEVVELGSARGKENAAAALLQLCT+S+RFCNMVLQEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQR N GRG
Sbjct: 14 GGMEIKLLKVLVNSISSFFHLSARENLNLQPVQKYYQKIEEILKLVKPVLDAIIDAEVTSDEKLQKAFTGLGNAVEDLRELFENWQPLMSKIYFVLQVESLIAKVKTSGLEIFELLKSFDGFLPAELSVASLELCIQKLKHLGSEQTSAIITEAIKDQVEASGASSDSLAKIADCLRLKSNQELLIEAVALEKLKENAEQAEKNGEAEYLDQMIALVTHMHDCLVLMKQSQSCSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCETNNVKLPDPLKSMSLNQPALLLAHAESGVPKDSHVQPHSRSNRSASPDSTRSLGSPIGSLISSSVIQQEGSPPSHPHSSSEDSLPGVAGNGHGLDIENVPRRSSEDRLVNSGDRS----GQLYLSPSRD--NSAGADEQSSQGHNRTQSASSTHSNS-----MPGDGNEAPSQGLTYGSDVSGEVTSAPQPASNLITPQREPEFASRLETRSRSQTIWRRPSQNFVPRIVSSPAVETRADLSGVEAQVRTLVEDLRCTSLDVQRNATAELRLLARHNMDNRIVIANCGAISLLVNLLHSADTKLQENAVTALLNLSINDNNKAAIANADAIEPLIHVLQTGSPEARENAAATLFSLSVIEENKVRIGRSGAIQPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTSSNRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQR--NAGRG 837
BLAST of XM_017363271.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6THI2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1169.45 bits (3024), Expect = 0.000e+0
Identity = 596/835 (71.38%), Postives = 688/835 (82.40%), Query Frame = 0
Match: A0A6P6THI2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1169.45 bits (3024), Expect = 0.000e+0
Identity = 596/835 (71.38%), Postives = 688/835 (82.40%), Query Frame = 0
Query: 6 MEISKLKALLKNISGLFHLSSRDNLSFEPVQRYYQKVEEMFKVMKLVLDAINDAEIASHESLQEPFASLYDSVDELREIFETWHPLMSKVYFVLQVESLMIKVRSSGLDIFEFLKSSDQPLPVELSTASLEHCLQKLKHLGLEQTSAVITKATRDQVEGSGPTSDCLVKITDSLSLKSNQELLIEAVALEKLKENAEQAEKNVEVDYLDQLLALVTYMHERLVLLKQSESYNTVQIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQVLAHTNLIPNYTVKALVAHWCESNGVKLPDPMRSMNLNIPSSLLRHAASGAPRDSQT----------APDSAYSSGSPGNNFISSSVTNREGTSPSRPRSSSEDSLSEEAENGHALNIDSLSPRRSENRQANLGDKNLDSGSRTTMSPTGEMPNVSRTNGSLSHGHNRTSSASSTLSNANFSQGIPGDNNEASSLVTAYSIDDSGELTSERQSAATLSSAQREPEFSPRFETRSRTQSIWRRPSDRFVPRIVSSPAVETRAIPTAVEIQIQKMVQDLKSTSMEEQRDATAELRLLAKHNMDNRIVIANCGGIPLLVNLLRSTDATTQENAVTALLNLSINDNNKAAIGNADAIDPLIYVLESGTAEAKENSAATLFSLSVIEDNKVKIGRSGAIQPLVDLLGHGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIHEGRAAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNGGRG 830
MEI LK L+ +IS FHLS+R+NL+ +PVQ+YYQK+EE+ K++K VLDAI DAE+ S E LQ+ F L ++V++LRE+FE W PLMSK+YFVLQVESL+ KV++SGL+IFE LKS D LP ELS ASLE C+QKLKHLG EQTSA+IT+A +DQVE SG +SD L KI D L LKSNQELLIEAVALEKLKENAEQAEKN E +YLDQ++ALVT+MH+ LVL+KQS+S + V IPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQ LAHTNLIPNYTVKAL+A+WCE+N VKLPDP++SM+LN P+ LL HA SG P+DS +PDS S GSP + ISSSV +EG+ PS P SSSEDSL A NGH L+I+++ R SE+R N GD++ + +SP+ + N + + S GHNRT SASST SN+ +PGD NEA S Y D SGE+TS Q A+ L + QREPEF+ R ETRSR+Q+IWRRPS FVPRIVSSPAVETRA + VE Q++ +V+DL+ TS++ QR+ATAELRLLA+HNMDNRIVIANCG I LLVNLL S D QENAVTALLNLSINDNNKAAI NADAI+PLI+VL++G+ EA+EN+AATLFSLSVIE+NKV+IGRSGAIQPLVDLLG+GTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATI EGR AIGQEGGIPVLVEVVELGSARGKENAAAALLQLCT+S+RFCNMVLQEGAVPPLVALSQSGTPRA+EKAQALLSYFRNQR N GRG
Sbjct: 1 MEIKLLKVLVNSISSFFHLSARENLNLQPVQKYYQKIEEILKLVKPVLDAIIDAEVTSDEKLQKAFTGLGNAVEDLRELFENWQPLMSKIYFVLQVESLIAKVKTSGLEIFELLKSFDGFLPAELSVASLELCIQKLKHLGSEQTSAIITEAIKDQVEASGASSDSLAKIADCLRLKSNQELLIEAVALEKLKENAEQAEKNGEAEYLDQMIALVTHMHDCLVLMKQSQSCSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCETNNVKLPDPLKSMSLNQPALLLAHAESGVPKDSHVQPHSRSNRSASPDSTRSLGSPIGSLISSSVIQQEGSPPSHPHSSSEDSLPGVAGNGHGLDIENVPRRSSEDRLVNSGDRS----GQLYLSPSRD--NSAGADEQSSQGHNRTQSASSTHSNS-----MPGDGNEAPSQGLTYGSDVSGEVTSAPQPASNLITPQREPEFASRLETRSRSQTIWRRPSQNFVPRIVSSPAVETRADLSGVEAQVRTLVEDLRCTSLDVQRNATAELRLLARHNMDNRIVIANCGAISLLVNLLHSADTKLQENAVTALLNLSINDNNKAAIANADAIEPLIHVLQTGSPEARENAAATLFSLSVIEENKVRIGRSGAIQPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPAAGMVDKAVAVLSNLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTSSNRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQR--NAGRG 822
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AW38 | E-Value: 0.000e+0, PID: 76.08 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7AY94 | E-Value: 0.000e+0, PID: 75.84 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7AXU0 | E-Value: 0.000e+0, PID: 75.24 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7AXB5 | E-Value: 0.000e+0, PID: 75.15 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7AW26 | E-Value: 0.000e+0, PID: 75.36 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7AW72 | E-Value: 0.000e+0, PID: 74.64 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7B038 | E-Value: 0.000e+0, PID: 74.64 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A2R6PAE3 | E-Value: 0.000e+0, PID: 71.89 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6P6THH7 | E-Value: 0.000e+0, PID: 71.33 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6P6THI2 | E-Value: 0.000e+0, PID: 71.38 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |