XM_017365160.1

Resource Type: 
Polypeptide
Name: 
XM_017365160.1
Identifier: 
XM_017365160.1-protein
Sequence: 
MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFS
ERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVAD
GYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVV
FFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLC
AGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPT
GSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFK
FLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFG
ICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKL
LVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDP
IKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLY
LSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIV
AVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA
Sequence Length: 
591
Sequence Checksum: 
e4e58de8076c4d3dd0f1be7c7d09d5fd
View location in JBrowse: 
DCARv2_Chr8:1360418..1362954-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017365160.1, derives from mRNA, XM_017365160.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZF73 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516366.1}))

HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 424/591 (71.74%), Postives = 510/591 (86.29%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA 591
            M+Q +++E+ D DE+ +V DSS DHKG++PLRASTG W+AS FII+IEFSERLSYFGIATSLI+YLTKVIHQDLKTAAKSVN WSGVTT MPLLGGF+AD YLG+F  VLVSSV+Y LGL+LLTMSR++PS +PC ++ C + R++HEVVFFLAIYLIS+GTGGHKPSLESFGA+QFDDDH +ERRKK+SFFNWWN GLC+GL + VT+IVY+QD+  WGV+ +ILT +MASTI+IFCAGRPFYR+R+PTGSPLTPML+VLVAA  KR LPH S  AELYE+P S KT+GRLL HT+  KFLDKAAII  + +   +Q N W LAT+T+VEEMKLIL MIPIWLT+LPFGICVAQ STFF+KQ +T++R IT  FLIPPAS++ L+AIGMI+SV +YDK+LVP LRR T NERG+ ILQRIGIGM+ T  TMV+A  VERKRL+++ +DP+KGS+SMSVFWLAPQF+IIG+GDGF+LVGLQEYFYDQVPDSMRSLGI LYLSV+G +SF+SS LITVVD +TEK+G+SWFGKDLNSSRLD FYWLLA I AVN+  YV V R+YSYKNVQ+R  VA  ++S++GDG+ A+A
Sbjct:    1 MEQSKREESVDFDEEKWVCDSSADHKGRVPLRASTGVWRASLFIIAIEFSERLSYFGIATSLILYLTKVIHQDLKTAAKSVNYWSGVTTTMPLLGGFLADAYLGQFSTVLVSSVVYLLGLMLLTMSRLVPSLKPCDTNHCDETRRIHEVVFFLAIYLISIGTGGHKPSLESFGANQFDDDHSKERRKKMSFFNWWNFGLCSGLLLGVTVIVYVQDHAGWGVSYLILTAIMASTIVIFCAGRPFYRYRMPTGSPLTPMLQVLVAAIKKRNLPHPSDPAELYEVPKSQKTQGRLLCHTDRLKFLDKAAIILEDTKNSANQQNPWLLATVTKVEEMKLILNMIPIWLTTLPFGICVAQGSTFFIKQCTTLDREITHGFLIPPASIYSLAAIGMIVSVTIYDKVLVPVLRRVTKNERGIKILQRIGIGMVFTIITMVVAALVERKRLSVLKNDPMKGSMSMSVFWLAPQFIIIGVGDGFTLVGLQEYFYDQVPDSMRSLGIALYLSVIGAASFLSSLLITVVDHITEKSGQSWFGKDLNSSRLDNFYWLLAAITAVNLCIYVWVARQYSYKNVQRRAAVAD-SNSYEGDGVGAMA 590
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U6K8 ((protein NRT1/ PTR FAMILY 5.6 {ECO:0000313|RefSeq:XP_011094926.1}))

HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 423/591 (71.57%), Postives = 505/591 (85.45%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA 591
            M+Q +K+E+   DED +VHDSS+DHKG++PLRASTGAWKAS FII+IEFSERLSYFG+ATSLIIYLTKVIH+DLKTAAK VN WSGVTT+MPLLGGFVAD YLGRF  VL+SSVIY LGLL+LTMSR++P  +PC   IC +PR++HEV FFLAIYLIS+GTGGHKPSLESFGADQFDDDHPEER+KK+SFFNWWN GLC GL + VT+IVYIQ+++SW  AD+ILT VMA TI+IFC+GRPFYRFR PTGSPLTP+L+VLVAA AKR LP+ S   +LYE+P S +T+ RLLFHT+  KFLDKAAIIE    + E Q N WRLAT+T+VEEMKL++ MIPIWLT+LPFGICVAQ STFF+KQ +T++R IT +F+IPPAS++ L+AIGMIISV +YDKLL P LRR TG+ERG+ +LQRIGIGM+ +  TMV+A  VERKRLN+V  +P++GS+SMSVFWLAPQFLIIG+GDGF+LVGLQEYFYDQVPDSMRSLGI LYLSV+G ++F+SS LIT+VD +TEK G+SWFGKDLN+SRLDYFYWLLAGI A NI  +  V  +YSYKNV  R    AVAD ++GD +EA+A
Sbjct:    1 MEQAKKQESRGGDEDKWVHDSSLDHKGRIPLRASTGAWKASLFIIAIEFSERLSYFGLATSLIIYLTKVIHEDLKTAAKRVNYWSGVTTLMPLLGGFVADAYLGRFSTVLISSVIYLLGLLVLTMSRVVPGLKPCDVGICERPRRIHEVFFFLAIYLISIGTGGHKPSLESFGADQFDDDHPEERKKKMSFFNWWNFGLCCGLLLGVTIIVYIQEHISWAAADVILTAVMAFTILIFCSGRPFYRFRKPTGSPLTPLLQVLVAAIAKRSLPYPSEPDQLYEVPKSDQTQRRLLFHTKKLKFLDKAAIIEDGQDSAEKQ-NPWRLATVTKVEEMKLVVNMIPIWLTTLPFGICVAQASTFFIKQGTTLDRKITRDFMIPPASIYALAAIGMIISVTIYDKLLEPILRRVTGHERGIKVLQRIGIGMIFSVLTMVVAALVERKRLNVVERNPLEGSVSMSVFWLAPQFLIIGIGDGFALVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFLSSLLITLVDHLTEKGGKSWFGKDLNTSRLDYFYWLLAGITAGNICIFAFVASRYSYKNV--RKTTVAVADCYEGDHIEAMA 588
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LEX4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132228.1}))

HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 415/574 (72.30%), Postives = 496/574 (86.41%), Query Frame = 0
 
Query:   17 YVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            +V+DSS+DHKG++PLRA+TG WKAS FII+IEFSERLSYFGIATSLIIYLTKV+HQDLKTAAK+VN W+GVTTIMPLLGGF+AD YLGRF  VL SS++Y LGL+LLTMSR++P+ RPC S  C +PRK+HEV FFLAIYLIS+GTGGHKPSLESFGADQFDDDH EERRKK+SFFNWWN GLC+GL + VT++VY+QD+VSW VADIILT VMAS++++FC GRPFYR+R P GSPLTPM++VLVAAFAKR L   S+ ++LYE+P S KT GRLL+HT+  KFLDKAAI+E N  + E Q N WRLAT+++VEEMKLIL MIPIWLT+LPFGICVAQ STFF+KQ +T++R I  +F+IPPAS++ L+AIGMIISV  Y+K+LVPFLR  TGNERG+ ILQRIGIGM+ +  TMV+A  VE+KRL LV +DP KGS +MSVFWLAPQFLIIG GDGF+LVGLQE+FYDQVPDSMRSLGI LYLSV+GV++FISS+LIT+VD +TE+ G+SWFGKDLNSSRLD FYWLLA I  VN+  YV + R+Y+YKNVQ R DV AVAD +KGDG+ A+
Sbjct:    7 WVYDSSLDHKGRVPLRATTGVWKASLFIIAIEFSERLSYFGIATSLIIYLTKVMHQDLKTAAKNVNYWTGVTTIMPLLGGFLADAYLGRFTTVLASSIVYLLGLILLTMSRLVPNLRPCDSSTCLEPRKIHEVFFFLAIYLISIGTGGHKPSLESFGADQFDDDHSEERRKKMSFFNWWNFGLCSGLLLGVTVVVYVQDHVSWAVADIILTIVMASSLVVFCIGRPFYRYRKPPGSPLTPMVQVLVAAFAKRNLACPSNPSQLYEVPKSQKTEGRLLWHTDKLKFLDKAAILEDNQSSGEKQQNPWRLATVSQVEEMKLILNMIPIWLTTLPFGICVAQASTFFIKQGTTLDRKIGHSFIIPPASIYSLAAIGMIISVITYEKILVPFLRTTTGNERGIKILQRIGIGMVFSVLTMVVAALVEKKRLTLVENDPTKGSSTMSVFWLAPQFLIIGFGDGFALVGLQEFFYDQVPDSMRSLGIALYLSVIGVANFISSWLITIVDTITEEKGKSWFGKDLNSSRLDNFYWLLAAITTVNLGVYVVLARRYAYKNVQGR-DVVAVADCYKGDGVGAV 579
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2YM72 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHT70830.1}))

HSP 1 Score: 880.552 bits (2274), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            M+QI+K E+ D+DE   V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF  VL+SS IYFLGLLLLTMSR+IP  +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R  TGSP  PML VLVAA  KR L   S+ + L+++P S  T+ RLL HT+  KFLDKAAI++    ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ  TMNR I  NF IPPAS++ L+A+GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A  VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+  YV V R Y+YKNV  R  +  VAD   GD  E +
Sbjct:    8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHKNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNRETM 596
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2VUK5 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHT36632.1}))

HSP 1 Score: 880.552 bits (2274), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            M+QI+K E+ D+DE   V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF  VL+SS IYFLGLLLLTMSR+IP  +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R  TGSP  PML VLVAA  KR L   S+ + L+++P S  T+ RLL HT+  KFLDKAAI++    ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ  TMNR I  NF IPPAS++ L+A+GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A  VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+  YV V R Y+YKNV  R  +  VAD   GD  E +
Sbjct:    8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHKNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNRETM 596
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8EIT1 ((protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|RefSeq:XP_016543240.1}))

HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 416/590 (70.51%), Postives = 495/590 (83.90%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            M+QI+K E+ D+DE   V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF  VL+SS IYFLGLLLLTMSR+IP  +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R  TGSP  PML VLVAA  KR L   S+ + L+++P S  T+ RLL HT+  KFLDKAAI++    ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ  TMNR I  NF IPPAS++ L+A+GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A  VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+  YV V R Y+YKNV  R  +  VAD   GD  E +
Sbjct:    8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHRNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNRETM 596
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3BFU5 ((Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PHU05354.1}))

HSP 1 Score: 879.011 bits (2270), Expect = 0.000e+0
Identity = 415/590 (70.34%), Postives = 495/590 (83.90%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            M+QI+K E+ D+DE   V+DSSVDHKG++PLR+STG WKAS FII IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN W+GVTT+MPLLGGF+AD YLGRF  VL+SS IYFLGLLLLTMSR+IP  +PC S+ C + RKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++P+ERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +AD+ILT VMAS+I IF AGRPFYR+R  TGSP  PML VLVAA  KR L   S+ + L+++P S  T+ RLL HT+  KFLDKAAI++    ++E Q N W+LAT+T+VEE+KLI+ MIPIWLT+LPFGICVAQ +TFF+KQ  TMNR I  NF IPPAS++ L+++GMII+V +YDK+LVPFLRR TGNERG+SILQRIGIGM+ + +TMV+A  VERKRLN+VH +P++GS SMSVFWLAPQFLI+G+GDGFSLVGLQEYFYDQVPDSMRSLGI LYLSV+G ++FISS LIT+VD +TE++G+SWFGKDLNSSRLDYFYWLLA I AVN+  YV V R Y+YKNV  R  +  VAD   GD  E +
Sbjct:    8 MEQIKKTESVDIDEQKMVYDSSVDHKGRVPLRSSTGVWKASLFIIVIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWTGVTTLMPLLGGFLADAYLGRFSTVLLSSTIYFLGLLLLTMSRVIPGLQPCDSNFCDERRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPKERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADVILTVVMASSIAIFYAGRPFYRYRKTTGSPFIPMLNVLVAAIRKRNLQLPSNPSHLHDVPKSETTQRRLLGHTKRLKFLDKAAILDVTQDSIEQQQNPWKLATVTKVEELKLIINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTSVGMIIAVTIYDKILVPFLRRTTGNERGISILQRIGIGMIFSISTMVVAALVERKRLNVVHKNPLEGSASMSVFWLAPQFLILGIGDGFSLVGLQEYFYDQVPDSMRSLGIALYLSVIGAANFISSLLITIVDHITEESGKSWFGKDLNSSRLDYFYWLLAIITAVNLCVYVFVARSYTYKNVDSRTTM-TVADCDDGDNCETM 596
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KJI1 ((Protein nrt1 ptr family 5.7 {ECO:0000313|EMBL:OIT28849.1}))

HSP 1 Score: 877.856 bits (2267), Expect = 0.000e+0
Identity = 413/590 (70.00%), Postives = 496/590 (84.07%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            ++Q+ K E+ ++D   +V+DSSVDHKG++PLR STG WKAS FII+IEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVN WSGVTT+MPLLGGF+AD YLGRF  VLVSS +YFLGLLLLTMSR++PS +PC S++C +PRKVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++PEERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +ADIILT VMAS+I IF AGRP YR+R  TGSP TPML+VLVAA  KR L   S+ + L+E+P S  T+ +LL HT   KFLDKAAI++    ++E Q NAW+LAT+T+VEE+KL++ MIPIWLT+LPFGICVAQ +TFF+KQ  TMNR I  NF IPPAS++ L+A+GMIISV +YDK+LVPF+RRATG+ERG+SILQRIGIGM+ + +TMV+A  VERKRLN+VH +P +GS SMSVFWLAPQFLIIG+GDGF+LVGLQEYFYDQVPD+MRSLGI LYLSV+G ++FISS LIT+VD +TE +G+SWFGKDLNSS LDYFYWLLA I AVN+  Y  V R Y+YKNV     + AVAD   GD  +A+
Sbjct:    8 IEQVMKAESVEIDGGKWVYDSSVDHKGRVPLRDSTGVWKASLFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNYWSGVTTLMPLLGGFLADAYLGRFSTVLVSSTVYFLGLLLLTMSRVVPSLKPCDSNLCDEPRKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPEERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADIILTVVMASSIAIFIAGRPSYRYRKATGSPFTPMLQVLVAAIRKRNLHLPSNPSHLHEVPKSETTQRKLLGHTTKLKFLDKAAILDHTQDSIEQQQNAWKLATVTKVEELKLLINMIPIWLTTLPFGICVAQAATFFIKQGMTMNRKIIHNFEIPPASIYALTAVGMIISVTIYDKILVPFMRRATGSERGISILQRIGIGMIFSVSTMVVAALVERKRLNVVHKNPFEGSASMSVFWLAPQFLIIGIGDGFTLVGLQEYFYDQVPDTMRSLGIALYLSVIGAANFISSLLITIVDHITENSGKSWFGKDLNSSHLDYFYWLLATITAVNLCVYAFVARSYTYKNVHSMTTM-AVADCDDGDNHKAM 596
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438JAM0 ((Protein NRT1/ PTR family 5.6 {ECO:0000313|EMBL:RVX05943.1}))

HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 408/588 (69.39%), Postives = 498/588 (84.69%), Query Frame = 0
 
Query:    4 IQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAIA 591
            +Q++E  ++DE  +V+DSSVDHKG+LPLRASTG WKAS FII+IEFSERLSYFGIATSLI+YL+KV+H+DLK+AAKSVN WSGVTT MPLLGGF+AD Y GRF  VL+SS++Y LGL+LLTMSR++PS RPC +  C +PRKVHEVVFFLAIYLIS+GTGGHKP+LESFGADQFDDD+ EER+KK+S+FNWWN GLC+GL + VT+IVY+QD+VSWGVADIIL+ VMA TI+IFC GRPFYR+R P GSPLTP+L+VLVAA AKRKLP+  + ++LYE+P + KT+ R L HTE  KFLDKAAI+E N  + E Q ++WRLAT+T VEEMKLIL MIPIWL+ LPFGICVAQ STFF+KQ +TMNR I ++FLIP AS++ L+AIGMI SV +Y+K+LVP LR+ATG ERG+ ILQRIGIGM+ +   M++A  VE+KRL +V  +P  GSLSMSVFWLAPQF+I+G+GDGFSLVGLQEYFYDQVPDSMRSLGI  YLSV+G ++F+SS LIT+VD VTEK G+SWFG DLN+SRLD FYWLLA +  +N+  YV V R+YSYKNVQ+R  V AVAD + GDG+ ++A
Sbjct:    2 VQRQEG-EVDEKTWVYDSSVDHKGRLPLRASTGVWKASLFIIAIEFSERLSYFGIATSLILYLSKVMHEDLKSAAKSVNYWSGVTTTMPLLGGFLADAYWGRFSTVLISSIVYLLGLILLTMSRVVPSLRPCGAGTCLEPRKVHEVVFFLAIYLISIGTGGHKPALESFGADQFDDDYSEERKKKMSYFNWWNFGLCSGLLIGVTVIVYVQDHVSWGVADIILSVVMAVTIVIFCVGRPFYRYRKPMGSPLTPLLQVLVAAIAKRKLPYPPNPSQLYEVPTAKKTQERFLCHTEKLKFLDKAAILEDNGDSAEKQQSSWRLATVTNVEEMKLILNMIPIWLSCLPFGICVAQASTFFIKQGATMNRKIDNDFLIPAASIYSLAAIGMIASVTIYEKILVPVLRQATGTERGIKILQRIGIGMVFSMIAMIVAALVEKKRLGVVEKNPQTGSLSMSVFWLAPQFVILGIGDGFSLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANFLSSLLITIVDHVTEKHGKSWFGVDLNTSRLDKFYWLLAIMNMLNLWVYVIVARRYSYKNVQRRAAV-AVADCYNGDGVGSMA 587
[Close]
BLAST of XM_017365160.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CNZ0 ((protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|RefSeq:XP_016502771.1}))

HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 411/590 (69.66%), Postives = 495/590 (83.90%), Query Frame = 0
 
Query:    1 MKQIQKKEAFDLDEDIYVHDSSVDHKGKLPLRASTGAWKASFFIISIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAKSVNCWSGVTTIMPLLGGFVADGYLGRFPAVLVSSVIYFLGLLLLTMSRIIPSWRPCSSDICHKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDDDHPEERRKKLSFFNWWNCGLCAGLFVAVTLIVYIQDNVSWGVADIILTCVMASTIIIFCAGRPFYRFRLPTGSPLTPMLRVLVAAFAKRKLPHASSTAELYELPNSAKTRGRLLFHTENFKFLDKAAIIEGNDRTLESQINAWRLATITEVEEMKLILKMIPIWLTSLPFGICVAQTSTFFVKQSSTMNRNITDNFLIPPASVFGLSAIGMIISVALYDKLLVPFLRRATGNERGLSILQRIGIGMLITFTTMVLAGFVERKRLNLVHSDPIKGSLSMSVFWLAPQFLIIGMGDGFSLVGLQEYFYDQVPDSMRSLGIGLYLSVLGVSSFISSFLITVVDKVTEKTGESWFGKDLNSSRLDYFYWLLAGIVAVNIVPYVAVTRKYSYKNVQQRGDVAAVADSFKGDGLEAI 590
            ++Q+ K E+ ++D + +V+DSSVDHKG++PLR STG WKAS FII+IEFSERLSYFGIATSLIIYLTKVIHQDLKTAA SVN WSGVTT+MPLLGGF+AD YLGRF  VLVSS +YFLGLLLLTMSR++PS +PC S++C + +KVHE +FFLAIYLIS+GTGGHKPSLESFGADQFDD++PEERRKK+SFFNWWN GLC GL + VTLIVY+Q++VSW +ADIILT VMAS+I IF AGR  YR+R  TGSPLTPML+VL+AA  KR L   S+ + L+E+P S  T+ +LL HT   KFLDKAAI++    ++E Q NAW+LAT+T+VEE+KL++ MIPIWLT+LPFGICVAQ +TFF+KQ  TMNR I  NF IPPAS++ L+A+GMIISV +YDK+LVPF+RRATGNERG+SILQRIGIGM+ + +TMV+A  VERKRLN+VH +   GS SMSVFWLAPQFLIIG+GDGF+LVGLQEYFYDQVPD+MRSLGI LYLSV+G ++FISS LIT+VD +TE +G+SWFGKDLNSSRLDYFYWLLA I AVN+  YV V R Y+YKNV     + AVAD   GD  +A+
Sbjct:    8 IEQVMKAESVEIDGEKWVYDSSVDHKGRVPLRDSTGVWKASLFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAAISVNYWSGVTTLMPLLGGFLADAYLGRFSTVLVSSTVYFLGLLLLTMSRVVPSLKPCDSNLCDESKKVHEPIFFLAIYLISIGTGGHKPSLESFGADQFDDENPEERRKKMSFFNWWNFGLCCGLLLGVTLIVYVQEHVSWAMADIILTVVMASSIAIFVAGRSSYRYRKTTGSPLTPMLQVLIAAIRKRNLHLPSNPSHLHEVPKSETTQRKLLGHTTKLKFLDKAAILDHTQDSIEQQQNAWKLATVTKVEELKLLINMIPIWLTTLPFGICVAQAATFFIKQGVTMNRKIIHNFEIPPASIYALTAVGMIISVTIYDKILVPFMRRATGNERGISILQRIGIGMIFSVSTMVVAALVERKRLNVVHKNLFAGSASMSVFWLAPQFLIIGIGDGFTLVGLQEYFYDQVPDTMRSLGIALYLSVIGAANFISSLLITIVDHITENSGKSWFGKDLNSSRLDYFYWLLATITAVNLCVYVFVARSYTYKNVHSMTTM-AVADCDDGDNRKAM 596
Match NameStatsDescription
A0A5J4ZF73E-Value: 0.000e+0, PID: 71.74(Uncharacterized protein {ECO:0000313|EMBL:KAA8516... [more]
A0A6I9U6K8E-Value: 0.000e+0, PID: 71.57(protein NRT1/ PTR FAMILY 5.6 {ECO:0000313|RefSeq:... [more]
A0A834LEX4E-Value: 0.000e+0, PID: 72.30(Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more]
A0A2G2YM72E-Value: 0.000e+0, PID: 70.51(Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PH... [more]
A0A2G2VUK5E-Value: 0.000e+0, PID: 70.51(Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PH... [more]
A0A1U8EIT1E-Value: 0.000e+0, PID: 70.51(protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|Re... [more]
A0A2G3BFU5E-Value: 0.000e+0, PID: 70.34(Protein NRT1/ PTR FAMILY 5.7 {ECO:0000313|EMBL:PH... [more]
A0A314KJI1E-Value: 0.000e+0, PID: 70.00(Protein nrt1 ptr family 5.7 {ECO:0000313|EMBL:OIT... [more]
A0A438JAM0E-Value: 0.000e+0, PID: 69.39(Protein NRT1/ PTR family 5.6 {ECO:0000313|EMBL:RV... [more]
A0A1S4CNZ0E-Value: 0.000e+0, PID: 69.66(protein NRT1/ PTR FAMILY 5.6-like {ECO:0000313|Re... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.