XM_017365448.1

Resource Type: 
Polypeptide
Name: 
XM_017365448.1
Identifier: 
XM_017365448.1-protein
Sequence: 
MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCG
KSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRT
DNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKS
EPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQS
SDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPI
MQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA
Sequence Length: 
286
Sequence Checksum: 
09ed9ce29a1c5a4ff1d64193d840462a
View location in JBrowse: 
DCARv2_Chr8:8778266..8779336-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017365448.1, derives from mRNA, XM_017365448.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A4GZI3 ((Transcription factor DcMYB3-2 {ECO:0000313|EMBL:BAF49443.1}))

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA 286
            MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA 286
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A4GZI2 ((Transcription factor DcMYB3-1 {ECO:0000313|EMBL:BAF49442.1}))

HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 283/286 (98.95%), Postives = 284/286 (99.30%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA 286
            MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHT+SAAA PKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQ ALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTSSAAA-PKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQQALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFWNAEEPCLVSNSNLYFTSLSECLVGDWLA 285
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D6FVD1 ((MYB transcription factor 1 {ECO:0000313|EMBL:QCB65748.1}))

HSP 1 Score: 439.499 bits (1129), Expect = 9.474e-155
Identity = 230/288 (79.86%), Postives = 255/288 (88.54%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCSSSEKPIMQILEEFW-NAEEPC-LVSNSNLYFTSLSECLVGDWLA 286
            MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTP K+ + KK KK+KK  +KSE  +  ++ANAS+V  KA  D+   +LI  T+T E LV+ AL+NKT D S DLVP VDSS++CLTDFLNYDFSGLL++D NH+DY+M+SASP  S EKP+M+ILEEFW NAEEPC LVSNS++YF SLS+CLVGDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPPKKSSTKKIKKYKKNCDKSESAQHNVQANASNV--KATDDKISQKLIVDTTT-EALVEDALKNKTIDLSPDLVPCVDSSEICLTDFLNYDFSGLLSSD-NHKDYEMDSASPSCSYEKPMMEILEEFWNNAEEPCQLVSNSDVYFASLSDCLVGDWLA 284
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A4GZI5 ((Transcription factor DcMYB5 {ECO:0000313|EMBL:BAF49445.1}))

HSP 1 Score: 320.857 bits (821), Expect = 1.137e-107
Identity = 181/300 (60.33%), Postives = 220/300 (73.33%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTP----TKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQ-LITSTSTMEPL----VQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQ-DYDMESASPCSSSEKPIMQIL-EEFWNA-EEPCLVSNS--NLYFTSLSECLVGDWLA 286
            MGRSPCCSKVGLNKGAWT+ EDKIL DFIHLHGEG WR+LPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DE+DLIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKK H N TTS +ASP TP    TKQC+ +K +K KK ++  E     + ++     +     ++DH  ++  T++ EPL    + P   + +  QS DLVP VDSSDM   + L++DFSGLL+T+ + Q D  +E+ S  S +E P+M +L +EFW+A EEP L + +  N YF S S+ L GDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRSLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTTSTSASP-TPKSSRTKQCSTEKKRK-KKDKKNVESTHQNVASSQVTHHSLITPPKSDHHPILMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSKIETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFL-GDWLA 297
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6PZX0 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53052.1}) (Fragment))

HSP 1 Score: 255.373 bits (651), Expect = 1.022e-81
Identity = 147/280 (52.50%), Postives = 173/280 (61.79%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHD-NHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDS-----------------------------------SDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCS 244
            MGRSPCC+K GLN+GAWT  EDKILT++I LHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DEE+LIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNT L KK  D N   +  +SP  P+ Q  N K K+ K++    +P+KP    N++ VR KA   +    L  ++  M  L   A + +T  ++S LV GV S                                    D+CL++FLN DFS   N D N      +  SPCS
Sbjct:    1 MGRSPCCAKEGLNRGAWTAHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTKPSAQPKNAKIKQ-KQQINNPKPMKP----NSNVVRTKAT--KCSKVLFINSPPMHNLQNKA-EAETKTKTSMLVNGVASDSMSNNEMERGNGFLSFRDEEKELSADLLDDFNIADDICLSEFLNSDFSNACNFDYN------DLLSPCS 266
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6PZW3 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53047.1}) (Fragment))

HSP 1 Score: 253.062 bits (645), Expect = 8.810e-81
Identity = 144/283 (50.88%), Postives = 175/283 (61.84%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAA--------------------LDEADHQLITSTSTMEPLVQPALQNKTTDQ------------------SSDLVPGVD-SSDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCS 244
            MGRSPCC+K GLN+GAWTT EDKILT++I LHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DEE+LIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNT L KK  D +  +   S  +PTK     K  K K+K+   +P++P    N++ VR KA                      ++A+ +  T +S    LV     +  ++                   S+DL+   + S D+CL++FLN+DFS   N D N      +  SPCS
Sbjct:    1 MGRSPCCAKEGLNRGAWTTQEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQENTNNS--SPTKLSAQLKNAKIKQKQINPKPMEP----NSNVVRTKATKCSKALFINSPPNSPPMHDLQNKAEAETTTKSSMPSMLVDGVASDSMSNNEMEYGDGFVSFCDDDKELSADLLEDFNISDDICLSEFLNFDFSNACNFDYN------DLLSPCS 271
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K3PI40 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:PNY14948.1}))

HSP 1 Score: 252.292 bits (643), Expect = 2.064e-80
Identity = 146/282 (51.77%), Postives = 173/282 (61.35%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHD-NHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPL--VQPALQNKTTDQSSDLVPGVDS-----------------------------------SDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCS 244
            MGRSPCC+K GLN+GAWTT EDKILT++I LHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DEE+LIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNT L KK  D N   +  +SP  P+ Q  N K    K+K+   +P+KP    N++ VR KA        + +  ++  P+  +Q   + +TT + S LV GV S                                    D+CL++ LN DFS   N D N      +  SPCS
Sbjct:    1 MGRSPCCAKEGLNRGAWTTHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTKPSTQPKNAKI---KQKQINPKPMKP----NSNVVRTKATKCSKVLFINSPPNSSSPMHNLQNKAEAETTTKPSMLVDGVASDSMSNNEMERGDGFLSFRDEEKELSADLLDDFNIADDICLSELLNSDFSNACNFDYN------DLLSPCS 269
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6Q1B7 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53053.1}))

HSP 1 Score: 251.521 bits (641), Expect = 2.868e-80
Identity = 146/281 (51.96%), Postives = 172/281 (61.21%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPL--VQPALQNKTTDQSSDLVPGVDS-----------------------------------SDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCS 244
            MGRSPCC+K GLN+GAWTT EDKILT++I LHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DEE+LIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNT L KK  D +  +   S  +PTK     K  K K+K+   +P+KP    N++ VR KA   +    L  ++    P+  +Q   + +TT + S LV GV S                                    D+CL++ LN DFS   N D N      +  SPCS
Sbjct:    1 MGRSPCCAKEGLNRGAWTTQEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNS--SPTKLSAQPKNAKIKQKQINPKPMKP----NSNVVRTKAT--KCSKVLFINSLPNSPMHDLQNKAEAETTTKPSMLVDGVASDSMSNNEMEHGYGFLSFCDEEKELSADLLEDFNIADDICLSELLNSDFSNACNFDYN------DLLSPCS 267
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6Q090 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53051.1}) (Fragment))

HSP 1 Score: 251.136 bits (640), Expect = 4.780e-80
Identity = 145/281 (51.60%), Postives = 172/281 (61.21%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPL--VQPALQNKTTDQSSDLVPGVDS-----------------------------------SDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCS 244
            MGRSPCC+K GLN+GAWTT EDKILT++I LHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DEE+LIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNT L KK  D +  +   S  +PTK     K  K K+K+   +P+KP    N++ VR +A   +    L  ++    P+  +Q   + +TT + S LV GV S                                    D+CL++ LN DFS   N D N      +  SPCS
Sbjct:    1 MGRSPCCAKEGLNRGAWTTQEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNKS--SPTKLSAQPKNAKIKQKQINPKPMKP----NSNVVRTRAT--KCSKVLFINSLPNSPMHDLQNKAEAETTTKPSMLVDGVASDSMSNNEMEHGYGFLSFCDEEKELSADLLEDFNIADDICLSELLNSDFSNACNFDYN------DLLSPCS 267
[Close]
BLAST of XM_017365448.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6Q1A7 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53048.1}) (Fragment))

HSP 1 Score: 249.21 bits (635), Expect = 2.342e-79
Identity = 145/280 (51.79%), Postives = 170/280 (60.71%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHD-NHTTSAAASPKTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQLITSTSTMEPLVQPALQNKTTDQSSDLVPGVDS-----------------------------------SDMCLTDFLNYDFSGLLNTDINHQDYDMESASPCS 244
            MGRSPCC+K GLN+GAWT  EDKILT++I LHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DEE+LIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNT L KK  D N   +  +SP  P+ Q  N   K  +K++   +P+KP    N++ VR KA   +    L  ++  M  L   A + +T  +   LV GV S                                    D+CL++FLN DFS   N D N      +  SPCS
Sbjct:    1 MGRSPCCAKEGLNRGAWTAHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTKPSAQPKNANIK--QKQQINPKPMKP----NSNVVRTKAT--KCSKVLFINSPPMHNLQNKA-EAETKTKPLMLVNGVASDSMSNNEMERGNGFLSFCDEEKELSADLLDDFNIADDICLSEFLNSDFSNACNFDYN------DLLSPCS 265
Match NameStatsDescription
A4GZI3E-Value: 0.000e+0, PID: 100.00(Transcription factor DcMYB3-2 {ECO:0000313|EMBL:B... [more]
A4GZI2E-Value: 0.000e+0, PID: 98.95(Transcription factor DcMYB3-1 {ECO:0000313|EMBL:B... [more]
A0A4D6FVD1E-Value: 9.474e-155, PID: 79.86(MYB transcription factor 1 {ECO:0000313|EMBL:QCB6... [more]
A4GZI5E-Value: 1.137e-107, PID: 60.33(Transcription factor DcMYB5 {ECO:0000313|EMBL:BAF... [more]
I6PZX0E-Value: 1.022e-81, PID: 52.50(Tannin-related R2R3 MYB transcription factor {ECO... [more]
I6PZW3E-Value: 8.810e-81, PID: 50.88(Tannin-related R2R3 MYB transcription factor {ECO... [more]
A0A2K3PI40E-Value: 2.064e-80, PID: 51.77(Tannin-related R2R3 MYB transcription factor {ECO... [more]
I6Q1B7E-Value: 2.868e-80, PID: 51.96(Tannin-related R2R3 MYB transcription factor {ECO... [more]
I6Q090E-Value: 4.780e-80, PID: 51.60(Tannin-related R2R3 MYB transcription factor {ECO... [more]
I6Q1A7E-Value: 2.342e-79, PID: 51.79(Tannin-related R2R3 MYB transcription factor {ECO... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.